Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	NIN	Gene	0	65.25	13.20	36.46	7.16	36.09	19.01	61.65
2	389869	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
3	324330	Transcript	1	6.28	0.00	1.63	0.04	1.27	8.91	6.06
4	382041	Transcript	0	0	0	0	0	0	0	0
5	311149	Transcript	0	0	0	0	0	0	0	0
6	245441	Transcript	0	0	0	0	0	0	0	0
7	389868	Transcript	0	0.21	0.00	0.00	0.03	0.52	0.00	0.00
8	389870	Transcript	0	0.35	0.27	0.89	0.16	0.41	0.00	1.26
9	324292	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	382043	Transcript	0	0	0	0	0	0	0	0
11	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	ER1b	ExonRegion	0	0.11	0.54	0.00	0.01	0.00	0.00	0.74
13	E1a_E2a	KnownJunction	0	1.44	1.42	1.47	0.00	0.00	0.00	1.69
14	ER2a	ExonRegion	0	2.56	4.36	0.56	1.25	0.40	0.93	6.11
15	E2a_E4a	KnownJunction	1	5.16	8.96	2.59	2.52	2.05	2.76	12.61
16	ER3a	ExonRegion	0	1.05	0.82	2.35	0.47	0.41	0.00	1.75
17	E3_Ab	KnownBoundary	0	1.74	1.21	2.60	0.00	0.00	0.00	0.76
18	ER3b	ExonRegion	0	1.11	0.14	1.73	0.00	0.68	0.00	0.86
19	E3a_E4b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	E3b_E4c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	ER3c	ExonRegion	0	0.00	0.00	0.34	0.00	0.81	0.00	2.02
22	ER4a	ExonRegion	0	21.91	11.73	9.59	6.22	10.54	14.79	29.51
23	E4_Ab	KnownBoundary	0	12.63	4.94	5.26	1.11	5.23	11.52	13.83
24	E4_Ac	KnownBoundary	0	11.98	9.59	6.55	3.82	4.13	8.68	18.03
25	ER4b	ExonRegion	0	26.90	20.65	18.63	9.98	14.17	25.75	38.79
26	ER4c	ExonRegion	0	27.47	18.34	21.70	9.34	14.44	26.40	46.80
27	E4a_E5a	KnownJunction	0	38.29	26.11	28.83	6.42	15.75	26.83	56.64
28	ER5a	ExonRegion	0	40.54	30.22	34.18	9.66	21.29	24.04	73.16
29	E5a_E6a	KnownJunction	1	21.56	24.91	22.49	4.20	25.20	35.08	73.51
30	ER6a	ExonRegion	0	34.98	22.39	24.96	10.26	21.94	25.67	60.15
31	E6a_E7a	KnownJunction	0	30.49	9.96	20.26	10.92	23.54	7.10	58.62
32	ER7a	ExonRegion	0	31.60	18.01	26.38	11.35	30.94	14.01	73.85
33	E7a_E8a	KnownJunction	1	25.80	16.97	24.88	7.26	31.54	17.02	71.69
34	ER8a	ExonRegion	0	47.47	22.29	29.20	15.69	26.17	20.34	86.32
35	E8a_E9a	KnownJunction	0	51.86	25.19	42.15	14.47	41.70	23.16	90.89
36	ER9a	ExonRegion	0	65.95	27.60	48.28	9.44	40.83	26.43	109.41
37	E9a_E10a	KnownJunction	0	85.87	25.72	47.67	8.70	41.26	29.64	105.01
38	ER10a	ExonRegion	0	73.56	31.95	45.04	8.03	39.16	24.19	112.75
39	E10a_E11a	KnownJunction	0	77.24	36.70	40.34	5.01	43.06	23.18	111.57
40	E11_Aa	NovelBoundary	1	33.15	0.00	5.02	1.68	2.19	1.45	3.70
41	ER11a	ExonRegion	0	111.82	33.40	53.49	11.93	49.64	27.08	111.33
42	E11_Da	NovelBoundary	1	43.88	1.08	2.13	0.00	0.00	1.29	3.14
43	E11a_E12a	KnownJunction	0	79.49	27.72	34.29	8.56	36.42	20.18	79.93
44	I11	Intron	1	20.59	0.00	1.01	0.00	0.00	0.27	1.05
45	I11_SR1	SilentIntronRegion	1	20.70	0.00	1.02	0.00	0.00	0.28	1.06
46	ER12a	ExonRegion	0	74.12	26.55	35.99	9.89	35.58	24.97	84.64
47	E12a_E13a	KnownJunction	0	51.69	22.83	32.15	6.56	34.46	14.55	69.74
48	ER13a	ExonRegion	0	48.46	26.64	35.60	8.37	29.62	13.61	85.43
49	E13a_E14a	KnownJunction	0	53.04	25.17	32.75	8.89	28.72	18.22	78.08
50	ER14a	ExonRegion	0	64.43	29.68	42.07	8.67	29.34	18.03	76.08
51	E14_Da	KnownBoundary	0	73.55	34.52	51.09	8.80	32.69	26.48	64.03
52	E14a_E14b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
53	ER14b	ExonRegion	0	62.23	25.82	47.01	7.96	37.78	18.44	72.03
54	E14b_E15a	KnownJunction	0	41.64	17.55	38.20	7.29	32.87	14.77	80.20
55	E14b_E16a	NovelJunction	0	6.56	9.72	8.74	2.90	1.01	7.37	9.65
56	ER14c	ExonRegion	0	47.23	21.95	40.60	7.90	35.58	17.57	83.15
57	ER15a	ExonRegion	0	49.37	25.32	34.98	6.39	26.95	16.76	92.34
58	E15a_E16a	KnownJunction	0	43.89	21.07	32.97	8.45	29.46	9.49	78.98
59	ER16a	ExonRegion	0	54.55	20.28	28.35	6.97	30.36	18.40	93.47
60	E16_Da	NovelBoundary	1	27.71	2.60	2.80	1.63	3.23	5.52	2.41
61	E16a_E17a	KnownJunction	0	39.35	15.34	32.59	4.74	10.65	20.26	94.99
62	I16	Intron	1	29.17	1.40	2.39	0.61	0.94	1.11	2.81
63	I16_SR1	SilentIntronRegion	1	30.38	1.47	2.48	0.59	0.96	1.17	2.92
64	E17_Aa	NovelBoundary	1	25.24	2.94	5.81	10.19	0.90	8.58	1.98
65	ER17a	ExonRegion	1	68.29	22.73	31.71	3.76	35.31	24.59	116.30
66	E17_Da	NovelBoundary	1	19.63	2.47	0.89	1.60	0.99	0.00	2.75
67	E17a_E18a	KnownJunction	0	42.74	20.75	25.51	4.25	38.20	33.29	86.25
68	I17	Intron	1	20.93	0.44	1.92	1.13	0.50	0.66	1.65
69	I17_SR1	SilentIntronRegion	1	20.97	0.44	1.92	1.14	0.50	0.67	1.66
70	E18_Aa	NovelBoundary	1	36.45	2.60	2.21	0.00	0.00	1.66	0.89
71	ER18a	ExonRegion	0	81.21	21.12	35.24	10.15	35.86	20.04	87.71
72	E18a_E19a	KnownJunction	1	16.11	6.78	21.45	7.31	23.40	23.29	28.91
73	E18a_E20a	KnownJunction	1	24.75	5.78	2.53	0.00	2.21	0.00	28.76
74	I18	Intron	1	24.89	1.48	2.22	0.61	2.12	0.80	2.79
75	I18_SR1	SilentIntronRegion	1	29.34	1.87	2.34	1.06	1.95	1.03	2.10
76	I18_AR1	ActiveIntronRegion	1	21.71	1.20	2.14	0.28	2.26	0.63	3.31
77	E19_Aa	NovelBoundary	1	35.48	1.50	1.42	0.00	2.03	0.00	5.42
78	ER19a	ExonRegion	0	81.69	9.87	46.41	9.17	44.09	18.90	44.75
79	E19_Da	NovelBoundary	1	33.58	0.00	3.91	3.28	6.32	3.11	16.71
80	E19a_E20a	KnownJunction	0	65.62	7.99	50.40	4.66	61.69	17.63	32.23
81	I19_SR1	SilentIntronRegion	1	21.95	0.77	0.75	0.13	2.79	0.81	3.03
82	I19_AR1	ActiveIntronRegion	1	21.68	1.18	1.47	1.14	0.82	1.88	3.04
83	E20_Aa	NovelBoundary	1	27.92	0.00	1.68	1.30	0.00	0.00	0.60
84	ER20a	ExonRegion	0	154.66	24.59	70.47	11.78	59.41	21.69	81.03
85	E20_Da	NovelBoundary	1	30.04	0.00	0.55	1.68	0.00	2.95	1.38
86	E20a_E21a	KnownJunction	1	153.23	24.67	61.29	8.56	70.80	12.44	71.73
87	ER21a	ExonRegion	0	137.35	16.04	64.35	6.00	62.28	14.20	75.83
88	E21_Da	NovelBoundary	1	20.01	0.00	0.66	0.00	0.00	0.00	0.62
89	E21a_E22a	KnownJunction	0	122.02	7.57	70.73	3.71	45.30	13.51	76.43
90	ER22a	ExonRegion	0	185.63	20.71	82.19	9.61	78.14	26.85	101.15
91	E22_Da	NovelBoundary	1	23.23	1.29	1.41	0.00	0.00	0.00	0.73
92	E22a_E23a	KnownJunction	0	122.94	19.55	44.33	6.12	83.57	23.13	76.57
93	ER23a	ExonRegion	0	116.58	20.59	55.31	9.57	73.68	27.04	83.69
94	E23_Da	NovelBoundary	1	26.79	0.00	3.16	0.00	1.08	0.00	6.05
95	E23a_E24a	KnownJunction	0	73.75	25.85	58.44	5.93	75.20	23.42	81.02
96	E23a_E25a	NovelJunction	1	36.45	15.34	4.73	6.96	2.03	3.14	2.24
97	I23	Intron	1	56.59	5.17	3.54	0.62	1.16	0.91	3.16
98	I23_SR1	SilentIntronRegion	1	24.05	1.29	1.83	0.37	0.90	0.43	2.71
99	I23_AR1	ActiveIntronRegion	1	48.86	7.35	3.27	0.23	0.01	1.97	3.80
100	I23_AR2	ActiveIntronRegion	1	81.34	16.16	5.15	0.94	0.66	3.94	5.95
101	I23_AR3	ActiveIntronRegion	1	204.17	19.18	11.58	1.44	1.85	2.17	5.48
102	I23_AR4	ActiveIntronRegion	1	124.33	11.66	5.01	1.15	3.23	0.20	1.32
103	I23_SR2	SilentIntronRegion	1	31.76	2.82	2.27	0.72	1.48	0.72	2.55
104	E24_Aa	NovelBoundary	1	204.54	27.87	32.10	0.00	0.00	1.66	5.14
105	ER24a	ExonRegion	0	95.53	24.81	56.48	5.69	58.57	25.79	98.82
106	E24a_E25a	KnownJunction	0	83.87	18.13	61.36	8.53	64.59	36.80	100.21
107	I24	Intron	1	28.09	2.84	8.63	1.20	1.27	4.43	4.44
108	I24_SR1	SilentIntronRegion	0	28.20	2.85	8.66	1.20	1.28	4.45	4.46
109	E25_Aa	NovelBoundary	1	39.32	1.10	4.93	0.00	0.97	0.00	2.06
110	ER25a	ExonRegion	0	107.36	20.89	52.59	7.07	64.60	31.74	100.43
111	E25_Da	NovelBoundary	1	96.53	18.05	5.27	1.65	2.21	4.05	5.13
112	E25a_E26a	KnownJunction	1	62.45	6.91	35.45	5.34	43.71	39.13	87.21
113	I25	Intron	1	20.70	1.50	2.30	0.88	0.67	1.40	1.65
114	I25_SR1	SilentIntronRegion	1	20.77	1.50	2.30	0.88	0.67	1.40	1.66
115	ER26a	ExonRegion	0	87.52	17.12	50.75	10.71	75.17	33.93	102.15
116	E26a_E27a	KnownJunction	0	61.55	28.61	47.29	10.38	60.40	54.91	120.79
117	I26	Intron	1	16.93	0.48	2.40	1.54	1.09	0.24	2.11
118	I26_AR2	ActiveIntronRegion	1	21.61	0.00	3.85	2.10	1.38	0.00	2.75
119	I26_AR3	ActiveIntronRegion	1	21.93	2.04	3.52	0.40	0.89	0.05	3.51
120	ER27a	ExonRegion	0	91.75	23.91	51.64	13.90	67.40	49.40	117.57
121	E27a_E28a	KnownJunction	1	56.61	14.55	40.62	10.81	55.56	49.93	112.64
122	I27	Intron	1	15.84	0.25	2.62	0.25	0.44	0.49	2.58
123	I27_SR1	SilentIntronRegion	1	15.88	0.25	2.63	0.25	0.44	0.50	2.59
124	E28_Aa	NovelBoundary	1	23.48	1.26	3.89	0.00	1.13	0.00	6.32
125	ER28a	ExonRegion	1	66.87	15.38	43.92	15.81	74.97	46.34	124.47
126	E28_Da	NovelBoundary	1	24.43	0.00	5.55	1.68	3.53	0.00	4.03
127	E28a_E29a	KnownJunction	1	39.02	23.30	31.69	11.03	83.91	38.38	122.56
128	ER29a	ExonRegion	0	74.95	27.72	50.14	14.39	71.19	47.69	133.05
129	E29_Da	NovelBoundary	1	18.99	1.02	3.78	0.00	0.00	0.00	3.07
130	E29a_E30a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
131	E29a_E31a	KnownJunction	0	82.46	34.55	64.70	8.75	65.63	57.22	133.67
132	I29	Intron	1	19.68	0.77	1.50	0.36	0.99	0.74	1.88
133	I29_SR1	SilentIntronRegion	1	19.19	0.41	1.59	0.24	1.14	0.47	1.51
134	I29_AR1	ActiveIntronRegion	1	20.54	0.82	0.82	0.58	1.16	1.56	5.07
135	I29_SR2	SilentIntronRegion	1	20.75	1.92	1.66	0.58	0.41	1.06	0.94
136	E30_Aa	NovelBoundary	1	20.66	0.97	0.78	1.30	0.00	0.00	1.22
137	ER30a	ExonRegion	0	0.64	0.00	0.00	0.08	0.39	0.00	0.00
138	E30_Da	NovelBoundary	1	33.96	1.44	3.41	1.68	0.00	1.07	2.59
139	E30a_E31a	KnownJunction	0	0.00	0.00	0.00	0.00	1.18	0.00	0.00
140	I30	Intron	1	16.06	1.63	2.21	1.11	0.31	1.09	2.58
141	I30_SR1	SilentIntronRegion	1	16.08	1.63	2.22	1.11	0.31	1.10	2.58
142	ER31a	ExonRegion	0	67.87	27.31	39.35	13.87	52.08	51.33	108.99
143	E31a_E32a	KnownJunction	1	8.08	0.00	2.63	0.00	0.00	11.52	8.61
144	E31a_E33a	KnownJunction	0	30.14	12.40	17.82	8.05	30.96	30.58	54.83
145	I31	Intron	0	18.21	3.55	4.34	1.02	1.25	2.29	4.62
146	I31_SR1	SilentIntronRegion	0	18.23	3.55	4.34	1.02	1.25	2.29	4.62
147	E32_Aa	NovelBoundary	1	17.62	2.78	2.79	0.00	1.91	0.00	1.25
148	ER32a	ExonRegion	0	4.48	0.00	0.63	0.08	2.55	6.31	3.50
149	E32_Da	NovelBoundary	1	31.83	7.83	10.10	2.76	3.30	27.90	23.06
150	I32	Intron	1	23.07	2.55	4.69	1.19	1.95	3.07	4.72
151	I32_AR1	ActiveIntronRegion	0	27.43	1.58	8.65	1.57	2.69	7.54	6.09
152	I32_AR2	ActiveIntronRegion	1	25.32	3.41	3.97	0.85	2.08	1.63	5.18
153	E33_Aa	NovelBoundary	1	26.75	1.26	1.41	1.44	1.18	7.18	5.83
154	ER33a	ExonRegion	0	60.01	12.67	31.13	8.60	40.19	29.57	70.50
155	E33_Da	KnownBoundary	0	56.13	5.28	17.76	3.28	3.97	5.36	20.26
156	E33a_E34a	KnownJunction	1	30.73	6.62	12.82	5.77	20.91	20.88	59.55
157	ER33b	ExonRegion	1	44.61	3.62	10.30	3.77	5.15	6.91	14.26
158	E33_Db	NovelBoundary	1	25.30	0.00	4.47	2.30	2.95	0.00	9.37
159	E33_Dd	NovelBoundary	1	29.86	0.00	12.14	0.00	14.66	3.19	7.64
160	ER33c	ExonRegion	0	15.26	0.87	1.35	2.85	1.27	0.00	5.11
161	ER33d	ExonRegion	0	8.15	0.00	1.22	2.24	0.00	0.00	3.24
162	I33	Intron	1	23.69	2.07	4.74	0.59	3.85	1.80	5.81
163	I33_SR1	SilentIntronRegion	1	20.93	1.64	3.33	0.14	3.24	1.03	4.74
164	I33_AR1	ActiveIntronRegion	1	28.34	2.15	5.05	0.32	5.68	1.17	5.24
165	I33_AR2	ActiveIntronRegion	0	23.83	2.46	5.21	1.01	3.40	2.65	6.84
166	ER34a	ExonRegion	0	52.77	7.21	31.15	4.27	28.78	14.10	49.99
167	IG1	Intergenic	0	17.68	1.90	2.58	0.65	0.28	0.45	0.38
168	IG1_AR2	ActiveIntergenicRegion	0	224.24	23.48	40.77	9.92	1.14	3.63	0.45
169	IG1_AR1	ActiveIntergenicRegion	0	117.50	22.96	21.29	5.48	1.48	2.65	0.62