Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RNF31	Gene	0	39.11	47.03	54.42	42.90	50.03	25.25	50.16
2	324103	Transcript	0	93.19	110.32	129.19	118.96	131.40	73.62	125.36
3	382682	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	382687	Transcript	1	8.58	8.31	20.68	18.17	4.36	8.60	7.05
5	IG8	Intergenic	0	8.61	9.04	7.35	9.53	7.72	7.39	9.95
6	IG8_AR1	ActiveIntergenicRegion	0	8.62	9.05	7.36	9.55	7.73	7.40	9.96
7	ER1a	ExonRegion	0	21.00	38.92	23.77	34.93	17.24	21.66	18.68
8	E1a_E2a	KnownJunction	0	65.14	99.10	99.73	98.48	54.20	68.80	64.03
9	E2a_E11b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	ER2a	ExonRegion	0	76.49	114.50	102.91	100.07	65.94	69.63	75.78
11	ER2b	ExonRegion	0	87.86	118.76	114.15	106.22	84.90	67.87	97.46
12	E2b_E3a	KnownJunction	0	93.08	81.34	128.34	109.15	149.54	64.53	110.39
13	E3_Aa	NovelBoundary	1	42.44	6.62	49.72	1.22	0.95	1.66	2.42
14	ER3a	ExonRegion	0	106.26	117.58	157.48	126.38	144.33	80.05	143.04
15	E3_Da	NovelBoundary	1	9.95	2.34	24.33	27.55	4.13	2.81	17.33
16	E3a_E5a	KnownJunction	0	85.57	123.58	116.77	134.07	146.82	82.01	150.54
17	E4_Aa	NovelBoundary	0	5.02	3.26	11.30	6.56	3.53	7.96	5.95
18	ER4a	ExonRegion	0	3.86	4.80	10.61	9.20	2.80	2.57	4.18
19	E4a_E5a	KnownJunction	1	13.30	11.82	30.74	27.15	5.92	14.63	9.93
20	E5_Aa	NovelBoundary	0	43.39	60.32	64.13	70.84	50.69	35.83	61.30
21	ER5a	ExonRegion	0	132.71	167.55	219.22	172.54	175.86	94.50	196.50
22	E5a_E6a	KnownJunction	0	188.08	166.93	296.80	177.99	218.61	102.72	226.44
23	ER6a	ExonRegion	0	160.27	141.48	233.59	127.99	211.70	88.88	189.70
24	E6a_E7a	KnownJunction	0	106.05	120.80	156.42	97.96	110.86	76.81	150.51
25	E7_Aa	NovelBoundary	1	46.95	13.56	68.89	17.58	5.30	15.60	5.57
26	ER7a	ExonRegion	0	110.99	106.92	144.55	84.08	152.86	58.38	144.06
27	E7a_E8a	KnownJunction	0	103.21	94.29	126.98	73.96	158.70	48.83	128.32
28	I7_SR1	SilentIntronRegion	0	4.86	3.03	4.29	6.20	11.56	5.48	9.44
29	E8_Aa	NovelBoundary	0	6.88	4.81	3.69	6.15	10.42	8.47	6.58
30	ER8a	ExonRegion	0	91.91	100.77	119.54	86.72	113.81	43.28	114.75
31	E8_Da	NovelBoundary	1	10.21	7.22	7.87	9.27	27.96	2.84	26.47
32	E8a_E9a	KnownJunction	0	69.08	104.09	88.92	58.44	46.80	52.50	65.92
33	I8	Intron	1	6.27	8.64	5.84	5.71	21.30	2.47	18.82
34	I8_AR1	ActiveIntronRegion	1	6.35	8.75	5.91	5.78	21.57	2.49	19.05
35	ER9a	ExonRegion	0	56.61	77.39	90.68	68.22	77.63	42.38	79.81
36	E9a_E10a	KnownJunction	0	31.31	56.04	48.38	46.52	37.41	24.74	49.27
37	I9	Intron	1	4.19	5.34	5.22	3.52	7.11	2.70	12.25
38	I9_AR1	ActiveIntronRegion	1	4.22	5.39	5.25	3.55	7.16	2.72	12.35
39	E10_Aa	NovelBoundary	1	3.99	4.49	2.96	2.38	6.06	3.08	13.84
40	ER10a	ExonRegion	0	31.68	55.39	48.65	53.66	48.58	23.97	56.95
41	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
42	ER11a	ExonRegion	0	11.48	3.46	13.49	7.01	31.86	3.10	12.78
43	E11_Ab	KnownBoundary	0	5.94	7.64	12.11	7.80	3.92	1.13	8.01
44	ER11b	ExonRegion	0	0.77	0.00	0.00	0.00	0.05	0.00	0.00
45	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
46	ER12a	ExonRegion	0	1.19	1.19	0.47	0.92	0.26	1.35	0.24
47	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
48	Ix_AR1	ActiveIntronRegion	0	12.53	5.49	10.47	5.65	11.50	1.40	11.44
49	ER13a	ExonRegion	0	0.22	0.18	0.52	0.35	0.15	0.00	0.00
50	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
51	ER14a	ExonRegion	0	0.00	0.00	0.00	0.34	0.42	0.00	0.40
52	E14a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
53	ER15a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.13
54	E15a_E16a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
55	E15a_E16b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
56	E16_Ab	NovelBoundary	1	4.71	7.25	5.78	15.55	6.73	3.32	13.80
57	ER16a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.65
58	ER16b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.95
59	E16a_E17a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
60	ER17a	ExonRegion	0	0.15	0.02	0.00	0.00	0.34	0.00	0.00
61	E17a_E18a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
62	Ix_AR2	ActiveIntronRegion	0	1.54	5.21	2.03	8.73	0.81	7.36	2.70
63	Ix_AR3	ActiveIntronRegion	0	5.38	7.49	3.93	7.79	1.76	8.00	3.97
64	ER18a	ExonRegion	0	0.36	0.79	0.00	0.36	0.00	0.00	0.00
65	E18a_E19a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
66	Ix	Intron	0	7.15	11.20	1.98	10.15	1.27	7.15	1.17
67	Ix_SR1	SilentIntronRegion	0	7.36	11.48	2.04	10.39	1.31	7.33	1.20
68	ER19a	ExonRegion	0	0.00	0.00	0.00	0.92	0.00	0.00	0.00
69	E19a_E20a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
70	Ix	Intron	0	10.91	10.55	8.43	6.62	7.21	8.57	7.32
71	Ix_AR1	ActiveIntronRegion	0	10.94	10.59	8.46	6.64	7.23	8.59	7.34
72	ER20a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
73	E20a_E21a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
74	Ix	Intron	0	6.50	9.28	3.68	9.20	1.32	10.03	5.16
75	Ix_SR1	SilentIntronRegion	0	4.73	9.70	2.42	7.43	0.71	9.45	4.90
76	Ix_AR1	ActiveIntronRegion	0	8.80	8.90	5.30	11.54	2.07	10.91	5.57
77	ER21a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
78	E21a_E22a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
79	ER22a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00