Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CUL4A	Gene	0	193.50	163.55	229.03	163.66	305.75	119.86	219.74
2	326335	Transcript	0	0.63	0.42	1.17	1.82	0.72	0.64	0.95
3	375440	Transcript	0	0.08	0.79	0.25	1.25	0.32	1.08	0.23
4	375435	Transcript	0	1.15	0.61	0.68	1.31	3.24	0.00	0.67
5	375441	Transcript	0	0	0	0	0	0	0	0
6	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	ER2a	ExonRegion	0	0.08	0.79	0.25	1.25	0.32	1.08	0.23
9	E2_Ab	KnownBoundary	0	1.59	2.81	1.62	3.87	0.00	5.90	0.54
10	ER2b	ExonRegion	0	16.79	42.34	13.98	24.52	16.87	27.42	20.08
11	E2a_E3a	KnownJunction	0	18.81	116.78	20.38	56.48	41.59	58.99	45.23
12	ER3a	ExonRegion	0	74.05	141.03	80.79	84.83	114.76	84.18	109.92
13	E3_Da	NovelBoundary	0	104.50	144.18	116.83	89.81	195.74	84.34	134.56
14	E3a_E4a	KnownJunction	0	1.65	1.52	2.89	6.50	1.18	2.55	1.78
15	E3b_E4a	KnownJunction	0	115.34	183.45	161.26	130.93	278.66	120.17	187.86
16	ER3b	ExonRegion	0	111.58	176.93	154.39	116.12	253.68	110.88	177.88
17	I3_AR6	ActiveIntronRegion	1	45.30	6.91	16.87	4.90	8.64	1.05	9.96
18	I3_AR7	ActiveIntronRegion	1	52.25	8.50	18.89	3.74	7.65	0.14	8.92
19	I3_SR4	SilentIntronRegion	0	42.57	4.94	18.51	3.65	9.34	1.77	8.31
20	I3_AR10	ActiveIntronRegion	1	47.35	5.03	16.46	5.33	18.22	1.84	9.44
21	ER4a	ExonRegion	0	158.14	257.28	191.20	178.35	248.94	144.13	231.63
22	E4a_E5a	KnownJunction	0	165.08	234.76	202.88	167.48	249.09	91.79	197.97
23	E4a_E5b	NovelJunction	0	7.21	33.15	5.62	25.06	10.21	16.62	5.06
24	E4b_E5b	KnownJunction	0	0.00	0.00	0.00	1.38	5.67	0.00	0.00
25	ER4b	ExonRegion	0	2.31	1.21	1.35	1.25	0.81	0.00	1.35
26	I4_SR2	SilentIntronRegion	0	43.06	17.29	30.24	13.36	15.47	9.57	14.76
27	I4_AR2	ActiveIntronRegion	0	40.70	19.73	29.83	14.69	13.74	11.15	16.52
28	I4_SR3	SilentIntronRegion	0	43.72	20.34	30.16	11.72	11.88	11.49	23.82
29	ER5a	ExonRegion	0	171.36	274.96	212.92	196.19	269.14	128.32	218.57
30	ER5b	ExonRegion	0	213.33	278.95	270.55	225.10	352.95	156.12	275.38
31	E5a_E6a	KnownJunction	0	272.15	314.73	333.56	281.04	531.88	188.43	358.17
32	I5_AR1	ActiveIntronRegion	0	38.90	16.00	21.09	12.61	16.13	11.06	13.42
33	ER6a	ExonRegion	0	229.43	259.09	273.55	240.78	409.70	149.62	305.03
34	E6_Da	NovelBoundary	1	39.37	69.07	55.33	32.92	40.71	21.55	57.48
35	E6a_E7a	KnownJunction	0	172.24	166.69	212.05	152.71	246.92	84.63	195.95
36	I6	Intron	1	34.41	40.19	29.74	29.27	37.46	12.83	28.20
37	I6_AR1	ActiveIntronRegion	1	58.91	85.30	53.30	60.68	84.80	25.27	55.80
38	I6_AR3	ActiveIntronRegion	0	39.93	21.33	29.88	16.89	21.90	8.94	19.93
39	E7_Aa	NovelBoundary	0	58.40	23.01	47.38	29.04	16.32	20.42	23.79
40	ER7a	ExonRegion	0	226.34	190.96	266.94	177.08	301.67	117.55	229.55
41	E7a_E8a	KnownJunction	0	218.97	138.87	255.95	128.52	261.70	106.13	214.54
42	ER8a	ExonRegion	0	242.27	174.10	286.07	178.99	303.64	122.44	229.43
43	E8a_E9a	KnownJunction	0	225.83	241.67	287.55	230.33	340.51	136.38	260.29
44	ER9a	ExonRegion	0	206.46	242.22	288.04	257.05	356.10	155.08	304.85
45	E9a_E10a	KnownJunction	0	177.51	233.71	252.08	230.71	365.94	156.64	291.95
46	I9_AR1	ActiveIntronRegion	0	43.55	17.04	36.94	12.75	26.06	7.58	18.25
47	I9_SR2	SilentIntronRegion	0	39.32	23.86	41.74	19.36	21.75	10.03	24.85
48	ER10a	ExonRegion	0	209.53	238.45	285.20	229.11	318.71	147.07	287.21
49	E10a_E11a	KnownJunction	0	194.10	194.70	280.26	193.46	325.53	118.75	274.69
50	E10a_E12a	NovelJunction	0	2.15	17.21	2.64	9.86	0.00	12.84	0.00
51	ER11a	ExonRegion	0	145.95	200.89	203.28	219.85	320.01	132.63	246.02
52	E11a_E12a	KnownJunction	0	151.88	172.66	207.51	209.31	357.62	125.56	242.44
53	ER12a	ExonRegion	0	166.81	251.90	237.45	228.38	351.00	150.74	305.59
54	E12a_E13a	KnownJunction	0	161.27	254.31	242.77	219.60	363.22	155.81	258.37
55	ER13a	ExonRegion	0	192.58	204.37	249.34	219.68	405.65	156.27	264.61
56	E13a_E14a	KnownJunction	0	285.23	196.85	313.43	238.00	503.89	179.83	286.31
57	ER14a	ExonRegion	0	399.07	228.26	418.83	265.31	618.62	173.30	394.54
58	E14a_E15a	KnownJunction	0	382.98	246.16	375.02	272.64	426.34	178.92	407.03
59	ER15a	ExonRegion	0	375.39	243.18	337.77	255.98	560.64	152.88	319.67
60	E15a_E16a	KnownJunction	0	462.14	222.97	368.41	240.11	622.59	156.32	292.89
61	ER16a	ExonRegion	0	536.93	273.94	480.31	281.89	652.48	192.24	444.06
62	E16a_E17a	KnownJunction	1	494.99	225.30	414.53	240.79	514.10	167.44	285.98
63	ER17a	ExonRegion	0	413.47	210.75	376.20	216.67	579.18	157.45	307.68
64	E17a_E18a	KnownJunction	0	280.51	174.92	282.55	165.91	485.82	97.74	232.44
65	E17a_E19a	NovelJunction	0	5.02	1.29	3.08	11.16	0.00	3.78	0.00
66	ER18a	ExonRegion	0	251.29	181.71	245.28	180.04	384.08	112.55	227.51
67	E18a_E19a	KnownJunction	0	166.75	155.00	210.15	173.71	324.81	93.72	212.89
68	ER19a	ExonRegion	0	201.92	174.01	269.15	213.19	349.66	118.76	268.57
69	E19a_E20a	KnownJunction	0	200.01	164.77	288.40	172.90	394.76	121.99	260.06
70	ER20a	ExonRegion	0	248.07	174.88	344.89	185.80	391.23	135.05	289.52
71	E20a_E21a	KnownJunction	0	264.97	156.60	296.79	151.76	376.80	151.20	261.53
72	ER21a	ExonRegion	0	241.89	172.19	318.40	184.50	391.87	137.43	301.85
73	E21_Da	KnownBoundary	0	217.64	177.81	308.46	209.31	379.33	113.01	303.97
74	ER21b	ExonRegion	0	154.06	119.81	191.56	125.79	243.92	109.83	171.82
75	ER21c	ExonRegion	0	0.86	0.15	1.78	0.78	1.72	0.00	2.02
76	IG37_AR1	ActiveIntergenicRegion	0	5.26	1.00	7.22	2.00	9.11	0.50	3.60
77	IG37_SR1	SilentIntergenicRegion	0	8.22	2.76	7.36	3.70	11.84	1.07	4.92
78	IG37_AR2	ActiveIntergenicRegion	0	14.73	1.65	10.12	4.90	12.65	0.70	7.51