Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	MCF2L	Gene	0	49.46	7.77	3.92	2.55	27.06	0.88	0.12
2	375608	Transcript	0	12.14	10.02	0.20	0.93	97.42	5.30	0.00
3	397036	Transcript	0	4.27	3.08	1.25	1.11	12.38	0.81	0.21
4	375604	Transcript	0	0	0	0	0	0	0	0
5	397030	Transcript	0	7.80	2.36	0.74	0.16	11.96	0.16	0.00
6	375601	Transcript	0	0.31	0.00	0.00	0.00	0.00	0.00	0.00
7	375597	Transcript	0	7.72	0.62	0.53	0.41	0.71	0.00	0.00
8	397024	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	375591	Transcript	0	3.43	0.11	0.17	0.12	0.62	0.00	0.00
10	397021	Transcript	0	1.09	0.00	0.30	0.00	0.56	0.00	0.00
11	409954	Transcript	0	1.30	0.08	0.28	0.00	0.18	0.00	0.00
12	397017	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	261963	Transcript	0	12.31	1.67	0.04	1.82	6.54	0.02	0.00
14	ER1a	ExonRegion	0	7.26	7.29	0.00	0.23	47.14	3.00	0.00
15	E1a_E2b	KnownJunction	0	22.06	18.07	0.60	1.11	109.55	9.67	0.00
16	ER2a	ExonRegion	0	2.61	2.19	1.08	0.25	18.79	1.23	0.00
17	ER2b	ExonRegion	0	20.99	23.20	1.67	4.17	69.37	6.54	0.00
18	E2a_E3a	KnownJunction	0	2.49	2.81	0.00	0.00	6.36	0.00	0.00
19	E2a_E7a	KnownJunction	0	7.11	4.70	0.00	1.44	135.57	3.22	0.00
20	ER3a	ExonRegion	0	7.71	4.25	2.66	3.09	12.00	1.21	0.62
21	I3_AR14	ActiveIntronRegion	0	11.13	7.52	2.68	2.62	4.24	0.61	0.00
22	E4_Aa	NovelBoundary	0	8.55	15.26	0.62	1.68	0.85	0.00	0.00
23	ER4a	ExonRegion	0	2.98	2.99	0.48	0.86	0.81	0.00	0.00
24	E4a_E7a	KnownJunction	0	6.94	0.00	0.00	0.00	0.00	0.00	0.00
25	ER5a	ExonRegion	0	0.62	0.00	0.00	0.00	0.00	0.00	0.00
26	E5a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
27	ER6a	ExonRegion	0	4.82	0.65	0.27	0.62	0.00	0.00	0.00
28	E6_Ab	KnownBoundary	0	2.40	0.00	0.76	1.03	0.00	0.00	0.00
29	ER6b	ExonRegion	0	2.83	0.97	0.66	0.08	0.08	0.00	0.00
30	E6a_E7a	KnownJunction	0	9.60	1.16	0.57	0.00	0.00	0.00	0.00
31	ER7a	ExonRegion	0	40.86	16.05	3.76	4.36	74.44	0.34	0.00
32	E7a_E8a	KnownJunction	0	49.79	11.01	2.87	8.24	46.01	1.05	0.00
33	ER8a	ExonRegion	0	62.26	17.01	3.89	3.53	36.02	1.40	0.00
34	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	E8a_E11a	KnownJunction	0	53.39	8.83	5.48	2.25	29.23	0.00	0.00
36	ER9a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
37	ER10a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
38	E10_Ac	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	ER10b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	ER10c	ExonRegion	0	0.28	0.00	0.00	0.00	0.00	0.00	0.00
41	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
42	ER11a	ExonRegion	0	63.74	10.15	4.27	1.18	43.17	0.00	0.00
43	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	E11a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
45	E11a_E14a	KnownJunction	0	77.06	9.72	3.58	0.00	51.20	0.00	0.00
46	ER12a	ExonRegion	0	2.17	0.00	0.59	0.00	1.12	0.00	0.00
47	ER13a	ExonRegion	0	2.61	0.15	0.57	0.00	0.35	0.00	0.00
48	ER14a	ExonRegion	0	61.80	6.82	4.64	1.20	35.37	1.51	0.00
49	E14_Da	NovelBoundary	0	16.27	2.71	2.13	2.87	1.18	0.00	0.00
50	E14a_E16a	KnownJunction	0	48.05	4.23	5.52	2.79	44.10	2.79	0.00
51	ER15a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
52	ER16a	ExonRegion	0	49.41	11.36	5.15	4.61	37.27	2.29	0.00
53	E16a_E17a	KnownJunction	0	52.14	15.00	3.16	6.56	38.54	2.55	0.00
54	ER17a	ExonRegion	0	55.04	17.34	4.77	5.51	42.60	2.04	0.00
55	E17a_E18a	KnownJunction	0	58.43	12.90	5.26	0.00	52.01	2.36	0.00
56	ER18a	ExonRegion	0	79.31	16.89	9.71	3.57	42.09	0.67	0.00
57	E18a_E19a	KnownJunction	0	69.03	12.95	5.76	2.87	45.23	0.00	0.00
58	ER19a	ExonRegion	0	78.77	13.72	10.39	2.53	49.70	0.81	0.00
59	E19a_E20a	KnownJunction	0	83.52	19.10	12.86	1.44	47.03	0.00	0.00
60	ER20a	ExonRegion	0	62.85	19.18	7.70	2.67	34.80	0.00	0.00
61	E20a_E21a	KnownJunction	0	53.14	9.30	5.52	3.33	27.11	0.00	0.00
62	ER21a	ExonRegion	0	53.33	12.55	5.96	3.60	24.87	1.02	0.00
63	E21a_E22a	KnownJunction	0	62.40	11.82	5.16	2.76	27.64	1.05	0.00
64	ER22a	ExonRegion	0	83.88	15.33	7.27	3.73	37.40	1.27	0.00
65	E22a_E23a	KnownJunction	0	64.22	22.80	4.56	4.52	29.18	1.37	0.00
66	ER23a	ExonRegion	0	52.31	15.57	3.39	3.06	31.99	0.36	0.00
67	E23a_E24a	KnownJunction	0	42.54	16.10	2.08	3.33	29.60	1.55	0.00
68	ER24a	ExonRegion	0	45.52	10.26	2.65	3.49	27.74	0.81	0.00
69	E24a_E25a	KnownJunction	0	42.26	4.68	3.84	3.55	29.90	0.00	0.00
70	ER25a	ExonRegion	0	57.00	6.11	2.99	4.11	33.13	0.00	0.00
71	E25a_E26a	KnownJunction	0	74.94	8.51	3.84	4.31	46.87	0.00	0.00
72	ER26a	ExonRegion	0	83.46	7.83	5.27	6.03	63.13	1.94	0.00
73	E26a_E27a	KnownJunction	0	84.83	6.49	3.72	10.16	79.49	2.76	0.00
74	ER27a	ExonRegion	0	144.80	15.53	8.85	6.76	72.33	1.72	0.00
75	E27a_E28a	KnownJunction	0	164.36	16.34	15.43	4.82	64.76	4.82	0.00
76	ER28a	ExonRegion	0	151.38	16.68	11.89	9.28	82.04	2.49	0.00
77	E28a_E29a	KnownJunction	0	143.22	13.21	12.50	10.65	85.62	1.66	0.00
78	ER29a	ExonRegion	0	146.19	16.60	13.11	5.64	86.65	1.36	0.00
79	E29a_E30a	KnownJunction	0	146.14	16.63	10.42	3.87	65.68	1.29	0.00
80	E30_Aa	NovelBoundary	0	62.90	1.13	3.92	1.11	0.00	0.00	0.00
81	ER30a	ExonRegion	0	135.05	18.03	9.56	5.30	70.27	0.69	0.00
82	E30a_E31a	KnownJunction	0	105.65	17.44	9.15	3.12	41.38	1.66	0.00
83	ER31a	ExonRegion	0	105.18	20.40	8.18	5.01	55.90	1.14	0.00
84	E31_Da	NovelBoundary	0	33.61	0.00	1.68	0.00	1.18	0.00	0.00
85	E31a_E32a	KnownJunction	0	83.32	11.93	2.20	7.67	56.09	0.00	0.00
86	ER32a	ExonRegion	0	84.35	16.85	4.75	5.18	62.34	0.56	0.00
87	E32_Da	KnownBoundary	0	69.83	23.80	3.32	3.36	48.53	0.00	0.00
88	E32a_E38c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
89	ER32b	ExonRegion	0	59.57	19.25	4.62	4.55	46.16	1.79	0.00
90	E32b_E33a	KnownJunction	0	68.35	14.42	7.90	7.80	43.80	3.99	0.00
91	ER33a	ExonRegion	0	68.66	13.64	4.76	6.38	49.17	1.99	0.00
92	E33a_E34a	KnownJunction	0	71.10	11.77	3.62	0.00	43.25	4.96	0.00
93	ER34a	ExonRegion	0	59.32	11.29	4.18	0.92	44.59	2.20	0.00
94	E34a_E35a	KnownJunction	0	42.53	7.49	5.22	3.09	34.95	0.00	0.00
95	ER35a	ExonRegion	0	41.29	10.30	4.17	5.42	30.47	1.50	0.00
96	E35a_E36a	KnownJunction	0	60.68	11.24	3.56	7.80	30.80	4.45	0.00
97	ER36a	ExonRegion	0	73.09	14.62	6.30	8.39	46.79	1.95	0.00
98	E36a_E37a	KnownJunction	0	2.17	0.00	0.00	0.00	0.00	0.00	0.00
99	E36a_E38b	KnownJunction	0	73.54	16.29	5.06	5.42	41.29	2.71	0.00
100	E37_Aa	NovelBoundary	0	17.42	1.21	1.77	2.47	1.96	0.00	0.00
101	ER37a	ExonRegion	0	16.16	1.20	1.32	0.62	2.14	0.00	0.00
102	E37_Da	NovelBoundary	0	24.55	4.41	2.77	0.00	8.67	0.00	0.00
103	I37_SR1	SilentIntronRegion	0	17.97	1.02	0.90	0.63	2.34	0.00	0.00
104	I37_AR1	ActiveIntronRegion	0	25.22	2.77	0.99	0.00	4.72	1.23	0.00
105	ER38a	ExonRegion	0	4.98	0.33	0.08	0.87	1.58	0.04	0.00
106	E38_Ab	KnownBoundary	0	6.94	0.00	0.63	1.68	2.26	0.00	0.00
107	ER38b	ExonRegion	0	72.77	19.09	3.56	7.59	33.70	2.23	0.00
108	E38a_E39a	KnownJunction	0	0.72	0.00	0.00	0.00	0.00	0.00	0.00
109	E38a_E40a	KnownJunction	0	53.32	15.42	4.58	1.27	29.23	0.00	0.00
110	ER38c	ExonRegion	0	55.88	15.08	1.87	3.31	19.60	0.85	0.00
111	ER39a	ExonRegion	0	13.00	0.46	0.67	0.47	2.47	0.00	0.00
112	E39_Da	NovelBoundary	0	18.03	4.07	1.45	2.82	1.18	0.00	0.00
113	ER40a	ExonRegion	0	58.78	11.64	2.92	1.38	30.87	1.92	0.23
114	E40_Da	KnownBoundary	0	4.31	0.00	0.89	0.00	2.12	0.00	0.00
115	E40a_E40b	KnownJunction	0	42.39	6.80	1.74	1.57	33.52	2.73	0.89
116	ER40b	ExonRegion	0	3.41	0.11	0.47	0.02	2.39	0.05	0.01
117	E40_Ab	KnownBoundary	0	1.34	1.31	0.00	0.00	1.08	0.00	0.00
118	ER40c	ExonRegion	0	24.31	6.45	2.12	1.68	16.01	0.57	0.24
119	E40_Db	KnownBoundary	0	4.62	2.50	2.90	3.28	6.78	0.00	0.00
120	E40b_E40c	KnownJunction	0	19.64	3.02	0.00	2.76	11.50	0.00	0.00
121	ER40d	ExonRegion	0	2.45	3.29	0.39	0.86	2.48	0.06	0.42
122	E40_Ac	KnownBoundary	0	2.77	3.73	1.51	1.27	2.03	0.00	0.00
123	ER40e	ExonRegion	0	17.12	6.42	1.95	1.55	12.73	4.07	0.00
124	E40_Dc	KnownBoundary	0	18.19	7.99	0.72	0.00	11.23	0.00	0.00
125	ER40f	ExonRegion	0	152.62	12.00	9.83	4.25	54.38	1.10	0.20
126	E40_Dd	KnownBoundary	0	83.25	18.89	3.81	5.69	83.89	0.00	0.00
127	ER40g	ExonRegion	0	36.64	5.70	1.96	2.03	33.61	0.00	0.00
128	E40_De	KnownBoundary	0	3.19	1.60	0.65	0.00	11.11	0.00	0.00
129	ER40h	ExonRegion	0	7.80	2.36	0.74	0.16	11.96	0.16	0.00