Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AL139801.17	Gene	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
2	322896	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
3	IG34_SR2	SilentIntergenicRegion	0	9.48	19.71	0.68	1.25	0.00	0.00	0.00
4	IG34_AR3	ActiveIntergenicRegion	0	13.89	37.53	1.03	1.25	0.00	0.00	0.00
5	IG34_AR2	ActiveIntergenicRegion	0	29.06	68.47	2.34	1.81	0.00	0.00	0.00
6	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	Ix	Intron	0	10.23	3.79	6.60	20.29	0.57	0.91	1.15
9	Ix_SR2	SilentIntronRegion	0	11.92	2.84	5.30	6.25	0.91	0.41	1.80
10	Ix_AR2	ActiveIntronRegion	0	10.89	5.43	8.97	34.89	0.38	1.46	0.83
11	Ix_SR1	SilentIntronRegion	0	2.40	2.38	4.90	30.32	0.00	1.23	0.00
12	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	Ix_SR2	SilentIntronRegion	0	4.44	7.60	4.84	8.82	0.00	0.00	1.42
15	Ix	Intron	0	8.29	5.54	23.40	20.03	0.39	1.55	1.85
16	Ix_SR7	SilentIntronRegion	0	4.02	12.67	13.80	21.51	0.19	2.48	2.45
17	Ix_AR8	ActiveIntronRegion	0	10.16	26.08	28.52	108.47	0.63	10.02	2.36
18	Ix_SR6	SilentIntronRegion	0	9.97	19.53	22.66	90.61	0.00	8.36	1.34
19	Ix_AR7	ActiveIntronRegion	0	10.26	27.78	28.66	80.20	0.45	5.28	1.12
20	Ix_SR5	SilentIntronRegion	0	6.66	6.64	16.63	21.72	0.55	1.71	1.12
21	Ix_AR6	ActiveIntronRegion	0	5.24	8.78	17.58	16.69	1.42	1.25	3.36
22	Ix_SR4	SilentIntronRegion	0	9.80	4.00	18.43	12.20	0.09	1.11	1.81
23	Ix_AR5	ActiveIntronRegion	0	9.33	2.82	29.52	13.19	0.30	1.71	1.62
24	Ix_SR3	SilentIntronRegion	0	6.48	2.81	18.82	9.37	0.34	0.39	1.07
25	Ix_AR4	ActiveIntronRegion	0	10.21	4.35	24.78	17.74	0.37	1.10	2.49
26	Ix_SR2	SilentIntronRegion	0	10.90	3.64	30.27	16.11	0.44	0.94	2.13
27	Ix_AR2	ActiveIntronRegion	0	4.64	3.68	24.86	24.39	0.73	0.47	3.03
28	Ix_SR1	SilentIntronRegion	0	5.51	3.88	28.23	22.76	0.54	0.00	4.11
29	ER3a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	Ix_SR3	SilentIntronRegion	0	8.39	4.38	13.09	8.76	0.62	0.29	1.07
32	Ix_AR2	ActiveIntronRegion	0	16.15	5.84	20.20	14.51	0.62	0.00	2.58
33	Ix	Intron	0	4.20	3.48	13.06	8.36	0.48	0.11	1.32
34	Ix_SR1	SilentIntronRegion	0	4.20	3.49	13.09	8.38	0.48	0.11	1.33
35	Ix_AR1	ActiveIntronRegion	0	3.15	3.43	15.57	22.06	0.27	2.47	0.00
36	ER4a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
37	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
38	Ix	Intron	0	17.37	7.98	94.95	58.45	0.46	1.04	0.72
39	Ix_SR2	SilentIntronRegion	0	8.03	3.71	17.43	17.42	0.00	0.97	0.00
40	Ix_AR1	ActiveIntronRegion	0	17.50	9.76	64.74	45.27	0.00	1.00	0.51
41	Ix_SR1	SilentIntronRegion	0	22.13	9.57	144.75	83.89	0.86	1.11	1.15
42	ER5a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
43	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	ER6a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
45	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
46	ER7a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
47	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
48	ER8a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
49	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
50	ER9a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
51	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
52	ER10a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
53	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
54	Ix	Intron	0	9.91	7.95	16.93	26.25	0.71	2.24	0.46
55	Ix_AR4	ActiveIntronRegion	0	6.67	18.88	19.68	43.06	1.82	2.28	1.25
56	Ix_SR2	SilentIntronRegion	0	14.82	14.45	27.56	36.13	0.56	3.77	0.71
57	Ix_AR2	ActiveIntronRegion	0	17.31	13.92	28.42	51.74	2.07	3.59	0.36
58	Ix_SR1	SilentIntronRegion	0	8.09	4.89	12.86	20.31	0.57	1.10	0.18
59	Ix_AR1	ActiveIntronRegion	0	11.71	4.89	15.99	24.22	0.43	4.43	0.81
60	ER11a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
61	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
62	ER12a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
63	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
64	ER13a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
65	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
66	ER14a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
67	E14a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
68	ER15a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00