Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	DHRS12	Gene	0	21.52	14.26	8.82	8.80	16.58	14.07	21.40
2	218981	Transcript	0	17.77	17.79	5.26	6.22	13.79	10.40	15.85
3	280056	Transcript	0	4.91	3.10	2.70	3.45	7.37	3.39	10.52
4	IG41	Intergenic	0	5.01	9.54	1.95	1.96	2.21	2.39	0.82
5	IG41_AR1	ActiveIntergenicRegion	0	17.10	32.21	6.75	6.06	7.91	7.31	2.69
6	ER1a	ExonRegion	1	16.10	23.28	3.27	6.07	14.77	5.35	12.06
7	E1_Ab	KnownBoundary	1	30.78	56.51	6.21	12.65	32.62	13.53	31.43
8	ER1b	ExonRegion	1	16.05	29.87	4.43	4.28	17.43	9.59	27.09
9	E1_Da	NovelBoundary	1	2.80	33.31	0.00	2.74	0.00	1.66	0.00
10	E1a_E2a	KnownJunction	0	6.84	2.60	2.04	1.08	6.85	5.33	21.73
11	I1_AR1	ActiveIntronRegion	0	2.68	9.40	1.55	2.77	0.48	2.55	0.10
12	ER2a	ExonRegion	0	35.27	11.44	12.24	4.49	16.96	11.77	24.04
13	E2a_E3a	KnownJunction	1	73.54	15.13	29.80	5.12	47.83	19.40	25.07
14	I2_AR1	ActiveIntronRegion	1	6.06	1.74	1.94	2.22	17.93	0.78	8.42
15	ER3a	ExonRegion	0	89.19	31.00	33.80	13.48	57.59	29.90	50.54
16	E3a_E4a	KnownJunction	0	110.40	25.88	34.19	14.68	58.65	35.80	81.67
17	ER4a	ExonRegion	0	67.58	23.67	23.74	10.86	53.04	28.57	71.96
18	E4a_E5a	KnownJunction	1	37.90	9.33	9.84	1.03	36.19	15.97	56.41
19	E4a_E6a	NovelJunction	0	3.39	1.63	5.75	0.00	8.00	2.68	0.54
20	I4	Intron	0	9.92	4.66	4.83	3.10	4.63	4.56	4.07
21	I4_AR1	ActiveIntronRegion	0	19.15	4.46	11.51	5.52	6.79	2.82	3.08
22	I4_SR2	SilentIntronRegion	0	20.16	4.37	7.88	3.17	8.63	5.01	4.52
23	I4_AR2	ActiveIntronRegion	1	8.59	7.74	4.37	8.18	5.26	5.37	10.63
24	I4_SR3	SilentIntronRegion	1	15.89	9.54	7.82	6.39	5.93	15.91	18.54
25	I4_AR3	ActiveIntronRegion	1	8.96	9.65	5.87	6.28	3.79	10.21	8.71
26	I4_SR4	SilentIntronRegion	1	11.53	6.96	7.57	4.82	4.99	8.29	9.48
27	I4_AR4	ActiveIntronRegion	1	12.88	13.39	8.85	8.31	7.51	14.89	12.03
28	E5_Aa	NovelBoundary	0	14.02	7.46	9.64	4.52	5.28	15.95	9.01
29	ER5a	ExonRegion	1	41.42	11.35	10.10	1.95	34.55	17.99	47.61
30	E5_Da	NovelBoundary	0	6.63	8.04	0.72	3.06	3.27	6.83	6.65
31	E5a_E6a	KnownJunction	0	37.77	13.58	10.85	6.75	32.16	23.34	46.65
32	E6_Aa	NovelBoundary	1	16.79	14.34	20.41	9.18	1.89	3.48	35.11
33	ER6a	ExonRegion	0	48.78	22.16	14.31	16.25	52.07	39.94	60.71
34	E6_Da	NovelBoundary	1	6.34	13.06	7.13	8.83	1.82	3.62	26.44
35	E6a_E7a	KnownJunction	1	22.78	21.62	7.59	3.93	33.61	23.72	31.54
36	E6a_E9a	NovelJunction	1	17.99	5.20	4.35	1.57	5.79	3.43	3.71
37	I6	Intron	1	7.17	6.12	5.28	4.58	5.46	7.36	10.37
38	I6_SR1	SilentIntronRegion	1	3.90	4.36	4.59	4.43	0.74	4.43	9.49
39	I6_AR2	ActiveIntronRegion	1	12.11	8.90	7.14	4.57	10.94	11.09	12.69
40	I6_SR2	SilentIntronRegion	1	5.10	4.89	3.96	4.82	4.28	6.35	8.76
41	E7_Aa	NovelBoundary	0	5.71	5.28	2.34	8.61	1.01	3.27	5.75
42	ER7a	ExonRegion	1	29.50	19.24	8.83	4.29	26.81	20.42	32.31
43	E7_Da	NovelBoundary	0	5.29	4.20	5.43	4.28	7.58	5.09	11.21
44	E7a_E8a	KnownJunction	0	0.93	0.00	0.73	0.00	1.08	0.00	4.54
45	E7a_E9a	KnownJunction	1	21.23	14.71	4.58	2.44	18.10	11.77	21.91
46	I7	Intron	1	3.58	5.67	3.99	6.10	4.95	6.28	9.12
47	I7_SR1	SilentIntronRegion	1	3.60	5.70	4.01	6.14	4.98	6.31	9.18
48	E8_Aa	NovelBoundary	1	4.96	15.40	4.47	11.24	10.97	12.11	21.54
49	ER8a	ExonRegion	0	8.89	6.21	4.67	6.91	13.66	6.77	16.50
50	E8_Da	NovelBoundary	0	6.74	6.86	3.64	6.64	6.25	4.23	10.85
51	E9_Aa	NovelBoundary	1	20.66	3.78	3.55	6.91	2.28	12.09	5.66
52	ER9a	ExonRegion	0	15.99	15.37	7.91	10.15	8.51	14.08	13.58
53	IG40	Intergenic	0	18.74	10.83	24.51	12.11	83.79	12.37	52.87
54	IG40_AR5	ActiveIntergenicRegion	0	3.31	4.40	4.96	2.97	3.84	3.32	7.82
55	IG40_SR4	SilentIntergenicRegion	0	4.68	3.23	2.56	1.07	1.41	2.31	7.65
56	IG40_AR4	ActiveIntergenicRegion	0	5.34	4.14	3.68	2.80	4.24	8.80	7.62
57	IG40_AR3	ActiveIntergenicRegion	0	16.12	14.23	26.29	15.85	98.44	16.62	59.70
58	IG40_AR2	ActiveIntergenicRegion	0	33.07	10.48	37.49	12.89	121.31	13.01	72.57
59	IG40_SR1	SilentIntergenicRegion	0	19.50	18.34	26.17	19.17	95.34	13.43	80.15
60	IG40_AR1	ActiveIntergenicRegion	0	12.09	4.81	10.24	7.67	52.02	5.91	34.62