Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	KIAA0774	Gene	0	3.79	4.38	5.12	6.50	1.72	1.50	1.52
2	255289	Transcript	0	0.04	0.02	0.13	0.00	1.68	0.00	0.00
3	380808	Transcript	0	1.28	0.81	0.96	0.00	0.00	0.20	0.22
4	400542	Transcript	0	0	0	0	0	0	0	0
5	ER1a	ExonRegion	0	0.31	0.20	0.14	0.00	2.36	0.00	0.04
6	E1a_E2a	KnownJunction	0	0.00	0.00	0.50	0.00	3.16	0.00	0.00
7	ER2a	ExonRegion	0	0.16	0.00	0.63	0.00	3.36	0.00	0.00
8	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	2.31	0.00	0.00
9	ER3a	ExonRegion	0	0.00	0.00	0.26	0.00	0.92	0.00	0.00
10	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	1.11	0.00	0.00
11	ER4a	ExonRegion	0	0.00	0.00	0.00	0.00	0.44	0.00	0.00
12	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	1.18	0.00	0.00
13	ER5a	ExonRegion	0	0.00	0.00	0.00	0.00	1.45	0.00	0.00
14	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	1.84	0.00	0.00
15	ER6a	ExonRegion	0	0.00	0.00	0.00	0.00	1.04	0.00	0.00
16	E6a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	1.06	0.00	0.00
17	ER7a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.67
18	ER7b	ExonRegion	0	0.00	0.85	0.40	0.00	0.00	0.36	0.55
19	E7a_E8a	KnownJunction	0	0.00	1.52	0.00	0.00	0.00	0.00	0.00
20	ER8a	ExonRegion	0	0.00	1.07	0.52	0.02	0.83	0.00	0.97
21	E8_Da	NovelBoundary	0	4.64	11.45	3.29	6.10	0.00	1.58	2.85
22	E8a_E9a	KnownJunction	0	0.00	1.08	0.00	0.00	1.13	0.00	1.43
23	ER9a	ExonRegion	0	0.79	2.52	0.65	3.13	0.40	0.47	0.53
24	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	1.06	0.00	1.38
25	Ix	Intron	0	4.66	8.41	5.53	13.77	0.00	3.71	0.53
26	Ix_SR1	SilentIntronRegion	0	4.66	8.42	5.54	13.79	0.00	3.71	0.53
27	I9	Intron	0	2.71	22.79	7.52	32.26	0.28	9.96	4.81
28	I9_SR1	SilentIntronRegion	0	2.74	23.03	7.60	32.64	0.28	10.07	4.87
29	E10_Aa	NovelBoundary	0	2.54	26.48	11.94	59.25	0.00	17.58	3.12
30	ER10a	ExonRegion	0	1.25	6.92	4.03	19.43	2.28	9.50	1.32
31	E10_Da	NovelBoundary	0	6.03	22.25	12.90	37.55	0.95	12.41	5.23
32	E10a_E11a	KnownJunction	0	0.73	0.00	0.00	0.00	6.27	0.00	1.36
33	I10	Intron	0	12.46	14.72	13.77	18.88	0.37	6.65	1.77
34	I10_SR1	SilentIntronRegion	0	12.46	10.23	9.53	12.49	0.20	5.68	0.94
35	I10_AR1	ActiveIntronRegion	0	20.38	25.76	26.45	27.73	1.07	10.35	3.54
36	I10_SR2	SilentIntronRegion	0	6.81	12.99	10.53	21.35	0.11	5.33	1.64
37	E11_Aa	NovelBoundary	0	15.92	24.98	30.74	38.85	0.00	7.64	3.35
38	ER11a	ExonRegion	0	6.18	0.08	0.52	2.43	2.63	0.10	1.85
39	E11_Da	NovelBoundary	0	13.92	7.09	10.43	16.80	0.00	3.08	4.74
40	E11a_E12a	KnownJunction	0	1.24	0.00	2.66	0.00	1.04	0.00	0.00
41	I11	Intron	0	10.82	12.61	10.05	18.71	0.03	4.25	2.06
42	I11_SR1	SilentIntronRegion	0	9.65	10.97	9.50	13.40	0.00	3.04	2.18
43	I11_AR1	ActiveIntronRegion	0	9.28	12.47	8.41	17.70	0.00	2.14	1.88
44	I11_SR2	SilentIntronRegion	0	8.51	9.98	8.98	15.54	0.06	3.68	1.70
45	I11_AR2	ActiveIntronRegion	0	7.31	11.42	7.07	23.31	0.00	3.44	2.02
46	I11_SR3	SilentIntronRegion	0	17.03	18.57	13.67	27.68	0.00	7.35	2.76
47	E12_Aa	NovelBoundary	0	2.29	15.08	5.63	29.15	0.00	11.34	3.43
48	ER12a	ExonRegion	0	1.39	1.83	2.05	3.87	1.24	1.85	0.08
49	E12_Da	NovelBoundary	0	6.34	4.68	8.49	22.24	1.18	1.50	1.65
50	E12a_E13a	KnownJunction	0	0.95	0.00	0.00	0.00	2.21	0.00	0.57
51	I12	Intron	0	7.16	7.02	8.97	9.84	0.05	2.97	1.02
52	I12_AR1	ActiveIntronRegion	0	10.27	9.71	10.36	10.20	0.10	2.16	0.60
53	I12_AR2	ActiveIntronRegion	0	4.42	4.64	7.77	9.55	0.00	3.71	1.40
54	E13_Aa	NovelBoundary	0	13.34	12.40	16.71	24.73	0.00	3.32	1.48
55	ER13a	ExonRegion	0	8.40	9.01	10.38	11.77	3.26	7.67	1.83
56	E13a_E14a	KnownJunction	0	0.00	0.00	0.68	0.00	4.43	0.00	0.89
57	E13_Db	NovelBoundary	0	7.74	2.71	6.16	13.63	0.00	3.91	2.22
58	E13b_E14b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
59	ER13b	ExonRegion	0	3.84	2.43	2.88	0.00	0.00	0.61	0.00
60	I13	Intron	0	7.88	7.15	7.33	9.29	0.00	2.27	1.01
61	I13_SR1	SilentIntronRegion	0	7.89	7.16	7.34	9.30	0.00	2.27	1.01
62	ER14a	ExonRegion	0	0.92	2.19	3.52	0.00	3.24	0.00	0.67
63	ER14b	ExonRegion	0	3.50	1.91	3.06	4.08	2.27	0.04	1.76
64	E14_Da	NovelBoundary	0	3.82	9.93	9.74	13.79	1.13	2.87	0.62
65	E14a_E15a	KnownJunction	0	0.00	0.00	0.72	0.00	1.18	0.00	2.57
66	I14	Intron	0	4.81	7.09	5.39	8.37	0.21	2.00	1.00
67	I14_SR1	SilentIntronRegion	0	4.82	7.10	5.40	8.38	0.21	2.01	1.00
68	E15_Aa	NovelBoundary	0	5.49	5.41	8.94	16.74	0.99	1.07	3.61
69	ER15a	ExonRegion	0	7.20	7.09	9.89	9.32	1.38	2.34	2.95
70	E15_Da	KnownBoundary	0	5.61	8.67	4.63	6.72	0.00	2.25	2.41
71	ER15b	ExonRegion	0	8.58	10.33	12.00	15.77	1.45	3.05	3.48
72	IG45	Intergenic	0	6.47	12.38	9.40	13.17	0.17	3.36	3.75
73	IG45_SR1	SilentIntergenicRegion	0	6.48	12.40	9.42	13.19	0.17	3.37	3.75