Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	HSPH1	Gene	0	601.12	897.64	1213.93	2644.28	503.66	2631.03	396.52
2	320027	Transcript	0	14.23	15.05	19.46	33.77	35.67	20.70	15.90
3	380406	Transcript	0	0.00	1.02	0.00	15.44	0.00	4.40	0.00
4	380405	Transcript	0	0	0	0	0	0	0	0
5	380363	Transcript	0	0	0	0	0	0	0	0
6	ER1a	ExonRegion	0	14.23	15.05	19.46	33.77	35.67	20.70	15.90
7	E1_Ab	KnownBoundary	0	14.29	17.23	18.49	25.74	33.84	4.98	16.05
8	E1_Ac	KnownBoundary	0	41.19	73.98	77.30	170.13	27.48	159.94	69.72
9	ER1b	ExonRegion	0	37.53	69.65	60.15	147.82	42.62	111.72	54.05
10	ER1c	ExonRegion	0	79.18	380.60	156.14	974.05	70.75	821.39	88.15
11	E1a_E2a	KnownJunction	0	222.71	895.72	550.48	2251.62	223.52	2163.60	208.14
12	ER2a	ExonRegion	0	272.57	967.28	764.09	2443.25	312.16	2250.63	281.64
13	E2a_E3a	KnownJunction	0	305.09	935.84	860.98	2529.36	447.78	2265.68	311.78
14	ER3a	ExonRegion	0	518.49	1162.96	1282.68	3146.63	496.73	2952.53	458.32
15	E3_Da	NovelBoundary	1	236.55	6.88	575.98	15.74	0.00	13.56	1.45
16	E3a_E4a	KnownJunction	0	588.82	1355.53	1464.54	3781.16	654.65	3350.16	540.87
17	E3a_E5a	KnownJunction	0	0.00	1.02	0.00	15.44	0.00	4.40	0.00
18	ER4a	ExonRegion	0	834.00	1507.02	1879.45	4241.91	724.67	3770.57	659.28
19	E4a_E5a	KnownJunction	0	728.22	1182.53	1661.38	3743.23	729.51	3227.63	587.87
20	E4a_E7a	NovelJunction	0	26.65	48.44	22.14	34.97	0.95	47.41	0.00
21	ER5a	ExonRegion	0	649.11	1193.44	1557.61	3576.96	608.06	2797.75	566.54
22	E5a_E6a	KnownJunction	0	636.07	953.50	1457.57	3102.01	582.84	2472.95	464.75
23	E5a_E7a	NovelJunction	1	13.42	44.29	4.68	19.94	3.32	13.67	6.59
24	ER6a	ExonRegion	0	557.25	958.41	1463.49	2908.47	544.92	2480.32	468.92
25	E6a_E7a	KnownJunction	0	553.19	921.13	1407.65	3004.89	504.58	2416.03	434.67
26	ER7a	ExonRegion	0	561.78	1075.73	1544.04	3152.87	478.87	2636.67	516.52
27	E7a_E8a	KnownJunction	0	655.76	1122.26	1749.70	3319.07	592.71	2565.57	532.80
28	ER8a	ExonRegion	0	719.32	1213.57	1729.23	3521.97	659.56	2841.04	562.37
29	E8a_E9a	KnownJunction	0	725.58	1239.80	1653.71	3646.76	765.12	3165.80	583.03
30	ER9a	ExonRegion	0	852.47	1173.11	1808.02	3473.21	667.79	2856.47	520.05
31	E9a_E10a	KnownJunction	0	896.88	1136.06	1652.66	3439.81	805.44	2908.02	496.66
32	ER10a	ExonRegion	0	937.53	1084.24	1775.60	3358.69	743.20	2885.09	511.78
33	E10a_E11a	KnownJunction	0	1140.47	1106.13	1753.05	3587.95	988.21	3053.43	468.08
34	ER11a	ExonRegion	0	1147.39	1365.30	1961.43	4064.39	779.78	3816.70	615.86
35	E11a_E12a	KnownJunction	0	706.65	937.10	1115.21	2170.05	735.25	1882.50	480.75
36	E11a_E13a	KnownJunction	1	32.36	45.90	146.05	653.68	14.52	632.61	7.75
37	ER12a	ExonRegion	0	484.27	879.90	1046.34	1990.36	585.28	1942.35	478.20
38	E12a_E13a	KnownJunction	0	361.39	844.60	818.89	1801.99	533.65	1943.60	400.32
39	ER13a	ExonRegion	0	471.56	986.60	1071.04	2677.04	489.29	2769.27	433.17
40	E13a_E14a	KnownJunction	0	436.17	1067.51	989.51	2689.28	454.79	2850.34	372.59
41	ER14a	ExonRegion	0	602.77	1104.89	1290.47	2999.77	585.74	3335.16	508.64
42	E14a_E15a	KnownJunction	0	473.61	828.57	990.81	2401.46	496.54	2838.52	405.65
43	ER15a	ExonRegion	0	572.02	906.50	1130.70	2722.43	562.73	2960.68	411.29
44	E15a_E16a	KnownJunction	0	788.43	984.63	1296.65	2944.59	679.60	3143.88	416.43
45	ER16a	ExonRegion	0	997.80	1175.00	1533.76	3610.16	919.39	3989.08	492.04
46	E16a_E17a	KnownJunction	0	1362.38	1360.12	1946.00	4224.50	1066.84	4780.41	554.75
47	ER17a	ExonRegion	0	1415.01	1199.50	2022.32	3684.64	904.83	4564.82	510.96
48	E17a_E18a	KnownJunction	1	1445.15	973.44	1977.73	2965.53	1238.03	3708.85	472.32
49	ER18a	ExonRegion	0	1104.83	1035.52	1787.97	3229.23	735.95	4173.22	436.68
50	E18_Da	KnownBoundary	0	633.52	595.39	1199.72	2007.42	461.93	2134.95	317.84
51	ER18b	ExonRegion	0	431.51	415.54	937.95	1422.97	394.08	1518.04	274.85
52	ER18c	ExonRegion	0	410.81	653.55	897.65	2211.35	324.95	2529.93	300.27
53	ER18d	ExonRegion	0	374.30	588.13	736.39	2005.73	308.18	2587.82	231.84
54	IG9	Intergenic	0	1.16	2.57	2.75	9.56	1.87	18.72	1.05
55	IG9_AR1	ActiveIntergenicRegion	0	11.90	20.82	23.30	62.52	21.29	97.34	10.54
56	IG9_SR1	SilentIntergenicRegion	0	0.15	0.87	0.83	4.62	0.06	11.38	0.16