Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	NCOR2	Gene	0	62.10	129.09	71.01	193.51	170.72	217.65	179.87
2	356219	Transcript	0	17.44	40.64	19.14	64.26	35.39	73.38	44.00
3	397355	Transcript	0	0	0	0	0	0	0	0
4	404621	Transcript	0	0	0	0	0	0	0	0
5	404121	Transcript	0	0	0	0	0	0	0	0
6	405201	Transcript	0	2.70	2.57	1.70	1.08	5.00	1.29	9.52
7	IG27_AR4	ActiveIntergenicRegion	0	5.02	23.45	5.51	35.82	10.34	26.74	11.58
8	ER1a	ExonRegion	0	4.87	25.48	7.21	24.24	12.94	21.82	19.68
9	E1a_E2a	KnownJunction	0	23.15	83.70	23.47	81.54	28.59	80.91	54.52
10	ER2a	ExonRegion	0	30.89	137.11	36.69	163.44	40.87	135.56	88.31
11	E2_Ab	KnownBoundary	0	33.33	190.91	44.06	230.87	30.89	186.29	105.98
12	ER2b	ExonRegion	0	41.89	164.55	63.01	194.89	65.37	194.83	107.84
13	E2a_E3a	KnownJunction	0	58.78	174.99	82.87	212.15	73.82	203.38	119.71
14	E2a_E4a	NovelJunction	1	1.50	0.00	0.00	5.47	1.08	10.16	0.00
15	ER3a	ExonRegion	0	53.35	151.14	57.74	183.44	69.66	154.36	114.93
16	E3a_E4a	KnownJunction	0	36.57	134.19	68.88	178.02	76.54	162.17	118.19
17	ER4a	ExonRegion	0	45.72	142.16	55.71	193.58	69.05	154.10	111.52
18	E4a_E5a	KnownJunction	0	52.57	149.33	68.24	213.53	87.95	142.39	111.96
19	ER5a	ExonRegion	0	43.13	145.88	60.30	217.12	81.73	127.10	121.25
20	E5a_E6a	KnownJunction	0	40.67	149.54	58.72	257.74	64.73	135.96	130.97
21	ER6a	ExonRegion	0	36.20	114.94	49.60	191.01	96.74	116.90	121.34
22	E6a_E7a	KnownJunction	0	41.32	88.61	57.22	130.61	138.99	74.37	122.79
23	E6a_E8a	NovelJunction	0	9.61	61.63	9.67	97.50	9.66	57.57	24.74
24	E6a_E9a	NovelJunction	0	0.00	6.04	1.12	9.24	0.00	4.23	0.00
25	ER7a	ExonRegion	0	47.60	100.98	66.00	133.58	105.51	104.81	131.17
26	E7a_E8a	KnownJunction	0	46.16	81.73	64.44	119.85	72.87	121.22	149.02
27	E7a_E9a	NovelJunction	0	1.03	4.26	0.53	2.90	0.00	10.88	0.00
28	ER8a	ExonRegion	0	50.98	124.63	70.14	185.23	100.76	148.83	148.47
29	E8a_E9a	KnownJunction	0	58.06	155.11	80.24	241.82	129.79	166.64	141.91
30	ER9a	ExonRegion	0	71.73	159.33	91.09	258.96	158.04	183.00	168.21
31	E9a_E10a	KnownJunction	0	78.38	151.64	95.49	245.77	141.41	181.01	189.12
32	ER10a	ExonRegion	0	66.38	132.03	82.94	212.20	153.30	173.00	178.03
33	E10a_E11a	KnownJunction	0	55.13	95.68	52.44	105.71	152.73	101.79	145.08
34	E10a_E11b	KnownJunction	0	13.25	20.60	11.77	26.33	31.17	15.87	22.89
35	E10a_E12a	NovelJunction	1	1.03	2.52	2.53	36.49	0.00	70.56	0.69
36	ER11a	ExonRegion	0	58.59	96.88	61.64	121.89	151.44	102.98	158.02
37	ER11b	ExonRegion	0	55.63	112.21	76.05	171.82	192.68	124.90	201.60
38	E11a_E12a	KnownJunction	0	62.24	143.00	91.51	252.19	242.54	173.31	258.74
39	ER12a	ExonRegion	0	70.82	163.08	107.63	241.93	182.80	208.56	233.55
40	E12a_E13a	KnownJunction	0	64.82	174.65	113.60	240.84	179.40	280.97	216.43
41	ER13a	ExonRegion	0	66.35	186.29	119.68	247.74	196.75	258.33	238.45
42	E13a_E14a	KnownJunction	0	60.60	168.61	115.70	238.32	253.51	205.47	220.80
43	ER14a	ExonRegion	0	52.98	137.14	84.91	196.55	175.03	195.04	152.83
44	E14a_E15a	KnownJunction	0	18.93	83.44	26.66	115.44	93.92	133.97	53.69
45	E14a_E16a	NovelJunction	1	0.00	0.00	0.00	1.68	0.00	8.63	0.00
46	ER15a	ExonRegion	0	35.49	104.99	49.43	155.32	115.05	138.64	109.75
47	E15a_E16a	KnownJunction	0	75.05	169.50	97.47	240.57	222.71	231.23	200.02
48	ER16a	ExonRegion	0	68.48	166.95	104.47	256.23	162.67	230.64	216.36
49	E16a_E17a	KnownJunction	0	77.56	141.34	113.84	233.63	196.41	248.73	201.74
50	ER17a	ExonRegion	0	73.37	138.40	115.97	220.38	219.24	219.55	213.96
51	E17a_E18a	KnownJunction	0	73.52	122.14	95.91	211.45	175.57	168.20	201.07
52	E17a_E19a	NovelJunction	1	0.00	19.44	2.47	17.69	1.18	5.07	2.15
53	ER18a	ExonRegion	0	70.50	125.47	90.63	202.78	144.71	204.30	177.83
54	E18a_E19a	KnownJunction	0	56.14	140.39	90.35	210.99	149.20	244.36	195.78
55	ER19a	ExonRegion	0	62.36	141.84	70.70	183.49	113.12	174.53	165.28
56	E19a_E20a	KnownJunction	0	24.87	46.03	29.43	47.63	33.47	23.37	102.15
57	E19a_E21a	KnownJunction	0	14.75	80.15	24.54	98.53	43.82	114.78	49.93
58	ER20a	ExonRegion	1	17.31	44.04	16.26	38.97	13.51	17.60	60.54
59	E20a_E21a	KnownJunction	0	13.03	32.05	10.66	32.48	5.14	17.50	27.24
60	ER21a	ExonRegion	0	25.91	70.46	25.85	104.55	56.34	108.94	80.35
61	E21a_E22a	KnownJunction	0	58.03	118.51	50.04	155.80	80.22	167.98	163.18
62	E21a_E23a	NovelJunction	1	1.02	0.00	1.42	15.04	0.00	11.44	0.82
63	E21a_E23b	NovelJunction	1	0.00	0.00	2.27	10.00	0.00	6.91	0.00
64	ER22a	ExonRegion	0	26.04	103.97	27.40	128.04	76.88	152.02	93.93
65	E22a_E23a	KnownJunction	0	25.50	63.92	21.01	54.07	41.26	70.43	65.35
66	E22a_E23b	KnownJunction	0	17.44	40.64	19.14	64.26	35.39	73.38	44.00
67	ER23a	ExonRegion	0	28.62	72.28	23.37	70.77	50.82	95.63	65.60
68	ER23b	ExonRegion	0	26.89	67.96	22.01	97.40	61.41	113.86	70.03
69	E23a_E24a	KnownJunction	0	24.77	49.36	19.40	66.48	40.62	75.74	41.95
70	E23a_E24b	KnownJunction	0	2.70	2.57	1.70	1.08	5.00	1.29	9.52
71	E24_Ab	NovelBoundary	0	32.19	55.59	32.48	95.41	47.97	87.61	73.32
72	ER24a	ExonRegion	0	25.60	52.29	24.09	86.24	43.67	77.58	59.98
73	ER24b	ExonRegion	0	26.31	66.83	24.11	107.95	57.31	109.37	89.88
74	E24a_E25a	KnownJunction	0	39.57	82.76	25.13	116.22	69.48	101.44	107.61
75	ER25a	ExonRegion	0	32.76	85.19	35.26	120.23	84.88	126.99	110.62
76	E25a_E26a	KnownJunction	0	35.27	103.17	57.24	148.35	153.44	161.47	160.63
77	E25a_E27a	NovelJunction	1	0.77	5.52	0.53	1.08	0.00	14.47	0.00
78	E25a_E28a	NovelJunction	0	2.40	5.73	1.51	13.49	0.00	17.18	3.10
79	ER26a	ExonRegion	0	53.21	103.73	64.15	159.21	158.30	148.36	182.02
80	E26a_E27a	KnownJunction	0	75.20	84.38	76.15	154.42	142.35	161.55	185.75
81	E26a_E28a	NovelJunction	1	5.14	7.96	6.11	17.88	4.40	31.01	2.54
82	ER27a	ExonRegion	0	58.27	106.85	57.99	168.03	116.33	130.73	176.07
83	E27a_E28a	KnownJunction	0	43.74	98.41	73.79	189.99	135.04	122.74	206.10
84	ER28a	ExonRegion	0	74.11	130.14	94.01	244.10	243.45	207.42	300.89
85	E28a_E29a	KnownJunction	0	79.46	149.88	67.96	247.86	153.67	223.86	336.33
86	ER29a	ExonRegion	0	65.60	156.38	75.37	236.89	184.57	242.81	292.12
87	E29a_E30a	KnownJunction	0	81.01	217.08	99.51	271.43	203.81	320.18	453.17
88	E29a_E33a	NovelJunction	1	0.00	0.00	0.00	0.00	0.00	10.80	0.00
89	ER30a	ExonRegion	0	65.02	164.02	83.62	239.87	194.42	277.60	313.99
90	E30a_E31a	KnownJunction	0	75.67	202.21	102.95	328.64	203.00	322.21	349.54
91	ER31a	ExonRegion	0	58.30	174.58	87.16	255.80	230.71	261.21	257.59
92	E31a_E32a	KnownJunction	0	58.72	169.69	93.15	218.25	199.13	221.15	231.34
93	E31a_E33a	NovelJunction	1	2.45	0.00	4.73	22.62	0.00	36.26	1.98
94	ER32a	ExonRegion	0	50.25	147.06	61.60	198.59	125.62	213.43	170.01
95	E32a_E33a	KnownJunction	0	56.70	139.90	62.35	194.43	155.95	200.30	183.53
96	ER33a	ExonRegion	0	54.80	130.81	58.24	187.48	165.91	202.49	164.45
97	E33a_E34a	KnownJunction	0	114.08	203.37	124.61	297.16	394.62	322.94	373.15
98	E33a_E35a	NovelJunction	1	0.00	7.04	2.05	25.01	1.91	27.87	2.36
99	ER34a	ExonRegion	0	138.09	243.62	148.34	321.91	341.44	372.40	451.24
100	E34a_E35a	KnownJunction	0	128.80	191.41	150.44	317.81	510.07	376.43	468.31
101	E35_Aa	NovelBoundary	1	36.55	0.00	42.31	1.68	0.90	0.00	3.93
102	ER35a	ExonRegion	0	62.94	125.51	77.33	207.12	250.39	221.01	274.10
103	E35a_E36a	KnownJunction	1	58.28	112.49	47.71	136.62	168.35	202.58	260.46
104	E35a_E37a	NovelJunction	1	13.57	8.51	19.62	88.56	10.37	107.76	19.63
105	ER36a	ExonRegion	0	52.41	112.25	49.36	145.66	167.34	169.79	216.10
106	E36a_E37a	KnownJunction	0	78.59	134.35	77.60	183.52	390.28	191.19	280.01
107	ER37a	ExonRegion	0	76.37	128.65	86.02	211.79	265.36	239.73	233.15
108	E37a_E38a	KnownJunction	0	64.92	119.59	92.04	240.68	240.49	248.03	245.57
109	ER38a	ExonRegion	0	60.39	146.25	80.11	229.67	173.45	275.86	225.04
110	E38a_E39a	KnownJunction	0	61.00	198.27	94.26	321.52	264.81	337.86	329.81
111	ER39a	ExonRegion	0	59.69	120.07	61.79	209.26	117.11	257.06	150.23
112	E39_Da	NovelBoundary	0	19.73	76.45	19.92	68.11	10.77	89.08	43.31
113	E39a_E40a	KnownJunction	1	70.87	102.93	82.07	234.74	98.94	333.60	160.05
114	ER40a	ExonRegion	0	72.27	129.88	77.62	265.91	164.92	326.45	168.26
115	E40a_E41a	KnownJunction	0	91.39	114.23	102.92	297.73	113.28	297.48	236.53
116	E40a_E42a	NovelJunction	1	2.49	2.60	1.42	21.27	1.13	14.36	0.66
117	E40a_E43a	NovelJunction	1	0.80	1.00	2.97	10.59	2.35	21.49	1.36
118	E40a_E44a	NovelJunction	1	0.00	0.00	0.00	4.20	0.00	11.31	0.00
119	ER41a	ExonRegion	0	45.24	132.44	62.62	205.77	114.44	234.56	164.94
120	E41a_E42a	KnownJunction	0	73.25	174.94	87.93	273.05	301.14	275.74	239.84
121	ER42a	ExonRegion	0	37.04	109.00	45.66	153.83	143.94	193.30	142.08
122	E42a_E43a	KnownJunction	0	42.76	120.69	65.86	184.44	314.35	255.99	204.88
123	ER43a	ExonRegion	0	70.82	177.19	116.63	290.95	294.13	356.78	302.72
124	E43a_E44a	KnownJunction	0	65.07	183.72	98.29	268.93	167.34	339.18	249.35
125	ER44a	ExonRegion	0	120.64	260.41	171.93	421.57	516.61	478.40	426.48
126	E44a_E45a	KnownJunction	0	157.90	266.13	194.83	399.27	767.61	480.89	487.67
127	E44a_E46a	NovelJunction	0	0.00	8.54	1.55	15.52	1.01	4.72	0.00
128	E44a_E47a	NovelJunction	1	0.00	1.37	1.49	1.14	0.00	11.60	0.77
129	ER45a	ExonRegion	0	144.51	232.40	170.32	346.96	564.78	422.40	402.68
130	E45a_E46a	KnownJunction	0	124.71	175.31	117.59	259.26	403.47	343.79	300.20
131	E45a_E47a	NovelJunction	1	11.72	32.26	41.57	48.55	0.00	94.15	77.56
132	ER46a	ExonRegion	0	126.79	225.08	136.75	301.66	387.67	393.74	338.59
133	E46_Da	KnownBoundary	0	110.39	212.51	76.11	250.65	439.13	283.92	267.57
134	E46a_E47a	KnownJunction	1	16.54	22.12	71.97	67.65	2.33	153.88	74.57
135	ER46b	ExonRegion	0	92.21	166.27	58.22	200.60	521.69	221.97	234.89
136	E46b_E47a	KnownJunction	0	83.28	147.20	56.49	207.92	433.30	224.88	241.70
137	ER47a	ExonRegion	0	66.66	161.04	78.99	246.97	190.18	349.20	213.38
138	E47a_E48a	KnownJunction	0	96.32	173.65	117.79	277.77	374.86	434.64	283.10
139	E48_Aa	NovelBoundary	1	35.15	1.18	30.22	3.87	2.93	1.02	1.42
140	ER48a	ExonRegion	0	90.49	98.79	79.52	156.89	218.44	278.55	142.59
141	ER48b	ExonRegion	0	3.84	6.07	8.81	18.70	27.53	23.29	9.44