Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CLIP1	Gene	0	247.84	311.72	385.58	395.84	48.25	546.14	262.88
2	392458	Transcript	0	14.65	50.91	28.72	74.91	4.55	74.46	27.66
3	361654	Transcript	0	160.01	374.39	348.06	430.23	36.49	436.94	318.60
4	302528	Transcript	1	1.68	9.60	11.21	57.17	0.05	89.41	1.84
5	358808	Transcript	0	0	0	0	0	0	0	0
6	IG47_AR4	ActiveIntergenicRegion	0	11.59	9.29	12.22	10.31	6.79	10.91	3.12
7	IG47_AR2	ActiveIntergenicRegion	0	7.10	4.48	12.95	1.81	2.34	2.34	3.35
8	ER1a	ExonRegion	0	16.28	18.52	22.64	34.02	2.20	32.73	23.05
9	E1a_E2a	KnownJunction	0	41.82	50.99	56.91	87.37	4.40	85.81	64.39
10	ER2a	ExonRegion	0	89.79	255.69	171.72	253.75	13.79	318.92	138.41
11	E2a_E3a	KnownJunction	0	121.25	309.19	244.77	333.30	26.93	421.80	198.20
12	ER3a	ExonRegion	0	192.36	385.85	326.25	436.19	30.80	477.59	236.78
13	E3a_E4a	KnownJunction	0	126.43	319.64	225.24	323.14	46.91	320.71	192.83
14	ER4a	ExonRegion	0	118.05	304.68	247.66	378.86	32.92	343.74	225.90
15	E4a_E5a	KnownJunction	0	169.40	323.56	306.66	392.44	47.93	344.51	275.38
16	ER5a	ExonRegion	0	85.74	337.15	159.75	416.69	26.46	343.68	204.31
17	E5a_E6a	KnownJunction	0	105.56	333.25	183.51	384.04	23.49	356.33	226.28
18	ER6a	ExonRegion	0	85.24	288.96	149.08	346.27	21.03	339.55	169.62
19	E6a_E7a	KnownJunction	0	111.12	300.91	235.66	382.91	32.04	450.10	211.06
20	E7_Aa	NovelBoundary	1	75.17	27.37	111.49	9.56	4.61	3.06	7.88
21	ER7a	ExonRegion	0	138.46	409.30	258.08	459.07	28.76	487.26	243.13
22	E7a_E8a	KnownJunction	0	153.71	465.98	278.50	539.98	30.13	516.11	259.61
23	ER8a	ExonRegion	0	169.18	456.21	365.21	560.46	32.31	567.05	312.62
24	E8a_E9a	KnownJunction	1	2.54	15.84	12.99	64.15	0.00	100.20	3.30
25	E8a_E10a	KnownJunction	0	4.67	11.11	4.58	15.63	0.00	13.88	0.82
26	E8a_E11a	KnownJunction	0	160.01	374.39	348.06	430.23	36.49	436.94	318.60
27	ER9a	ExonRegion	0	1.58	10.16	13.14	59.36	0.15	98.49	1.35
28	E9a_E10a	KnownJunction	1	0.92	2.78	7.50	48.01	0.00	69.55	0.89
29	E9a_E11a	NovelJunction	0	0.00	7.33	4.04	13.33	0.00	13.91	0.00
30	ER10a	ExonRegion	0	12.83	22.15	16.42	69.24	1.12	96.19	2.38
31	E10a_E11a	KnownJunction	0	7.76	22.17	14.26	54.89	0.00	69.01	3.11
32	ER11a	ExonRegion	0	235.05	328.13	406.03	402.61	39.13	427.44	263.26
33	E11_Da	KnownBoundary	0	224.00	308.22	396.35	397.32	44.17	408.08	292.43
34	E11a_E13a	KnownJunction	0	0.00	4.41	0.00	1.68	0.00	5.63	0.69
35	ER11b	ExonRegion	0	230.17	298.62	416.64	382.57	40.54	401.57	263.34
36	E11b_E12a	KnownJunction	0	220.07	204.26	402.01	328.72	46.73	386.29	212.06
37	E11b_E13a	NovelJunction	1	2.07	24.93	3.02	7.34	0.00	19.38	8.17
38	ER12a	ExonRegion	0	269.91	211.59	462.17	348.07	44.87	400.08	231.14
39	E12a_E13a	KnownJunction	0	293.51	230.03	481.82	375.97	42.33	452.54	193.03
40	ER13a	ExonRegion	0	313.61	283.21	542.41	386.15	44.46	454.76	244.57
41	E13a_E14a	KnownJunction	0	289.34	292.74	488.59	343.43	42.90	417.49	242.59
42	ER14a	ExonRegion	0	376.02	310.87	540.53	396.79	56.25	470.80	288.94
43	E14a_E15a	KnownJunction	0	435.06	266.02	561.45	385.78	52.33	497.54	261.08
44	ER15a	ExonRegion	1	520.05	332.56	649.61	430.01	79.18	523.37	270.96
45	E15a_E16a	KnownJunction	1	748.96	507.25	868.67	663.27	103.18	769.05	357.33
46	ER16a	ExonRegion	1	651.77	443.25	734.44	603.38	85.74	738.69	319.87
47	E16a_E17a	KnownJunction	0	239.45	290.54	333.58	407.91	67.64	515.47	200.94
48	ER17a	ExonRegion	0	230.83	320.71	334.13	406.21	45.21	536.62	231.08
49	E17a_E18a	KnownJunction	0	274.18	319.20	381.14	369.71	36.12	471.89	230.99
50	I17_AR3	ActiveIntronRegion	0	41.32	15.70	32.07	40.48	17.58	22.42	4.77
51	I17_AR4	ActiveIntronRegion	0	46.85	19.61	38.32	41.54	19.18	21.30	10.16
52	I17_SR2	SilentIntronRegion	0	35.91	23.73	27.27	45.49	21.61	23.46	5.96
53	I17_AR5	ActiveIntronRegion	0	22.38	19.71	21.89	46.98	16.72	27.72	4.40
54	I17_SR3	SilentIntronRegion	0	33.24	23.39	25.96	69.16	25.63	44.27	7.36
55	I17_AR6	ActiveIntronRegion	0	18.49	18.36	16.79	55.80	17.84	32.68	5.23
56	ER18a	ExonRegion	0	329.67	333.18	466.55	476.83	60.10	634.66	308.75
57	E18a_E19a	KnownJunction	0	329.08	348.60	510.75	523.83	75.18	736.08	299.50
58	ER19a	ExonRegion	0	363.34	345.19	561.97	454.10	56.02	665.98	291.59
59	E19a_E20a	KnownJunction	0	358.27	295.97	541.34	418.80	75.71	623.28	277.34
60	ER20a	ExonRegion	0	274.88	277.19	442.75	367.58	54.50	518.03	247.92
61	E20a_E21a	KnownJunction	0	206.05	248.79	399.78	392.17	46.36	505.90	229.10
62	ER21a	ExonRegion	0	214.76	309.58	456.40	425.68	42.43	591.51	274.32
63	E21a_E22a	KnownJunction	0	189.18	321.25	423.29	403.77	34.26	610.20	252.81
64	ER22a	ExonRegion	0	227.45	363.79	459.63	513.58	60.55	686.64	316.72
65	E22a_E23a	KnownJunction	0	171.14	322.04	372.44	463.72	40.16	628.40	266.65
66	ER23a	ExonRegion	0	183.21	354.15	384.83	457.44	53.99	661.25	312.22
67	E23_Da	NovelBoundary	1	93.26	27.37	147.01	7.53	1.18	11.10	6.16
68	E23a_E24a	KnownJunction	0	184.12	347.70	372.09	445.11	84.07	609.05	331.43
69	E23a_E25b	NovelJunction	0	0.00	22.23	3.32	21.43	0.00	59.60	0.89
70	ER24a	ExonRegion	0	174.34	279.17	389.78	396.28	75.27	555.70	387.72
71	E24_Da	NovelBoundary	1	88.31	39.96	71.85	41.86	2.35	45.05	18.86
72	E24a_E25a	KnownJunction	0	6.96	44.00	5.95	77.70	0.00	58.91	6.94
73	E24a_E25b	KnownJunction	0	141.81	171.13	314.31	263.14	89.58	407.97	355.03
74	I24_AR1	ActiveIntronRegion	1	95.77	44.50	83.61	41.58	4.16	61.67	15.71
75	E25_Aa	NovelBoundary	1	72.48	61.29	45.70	49.14	3.92	61.48	10.25
76	E25_Ab	NovelBoundary	1	101.61	54.36	172.60	51.85	5.09	96.88	9.79
77	ER25a	ExonRegion	0	36.99	104.30	80.22	145.36	13.65	158.85	75.36
78	ER25b	ExonRegion	0	267.86	507.67	466.24	636.60	81.98	918.42	480.85
79	E25a_E26a	KnownJunction	0	296.81	553.64	464.56	717.75	66.37	999.15	474.64
80	ER26a	ExonRegion	0	300.70	279.24	431.04	368.77	65.07	729.93	303.05