Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RAB3IP	Gene	0	74.00	109.21	45.56	51.00	30.68	16.81	32.17
2	247833	Transcript	0	0	0	0	0	0	0	0
3	325596	Transcript	0	0	0	0	0	0	0	0
4	393355	Transcript	1	38.62	20.28	11.17	3.55	8.07	2.57	1.91
5	378815	Transcript	1	19.13	33.63	10.40	8.18	5.35	4.69	0.00
6	325555	Transcript	0	0	0	0	0	0	0	0
7	378809	Transcript	0	0	0	0	0	0	0	0
8	362025	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	IG8_AR7	ActiveIntergenicRegion	0	14.63	53.94	5.33	8.87	0.14	5.18	2.01
10	ER1a	ExonRegion	0	0.00	0.61	0.00	0.00	0.00	0.00	0.00
11	ER1b	ExonRegion	0	22.77	98.27	18.24	45.24	21.01	18.03	14.78
12	E1a_E4a	KnownJunction	0	23.22	201.08	18.97	78.92	9.15	23.53	36.95
13	ER2a	ExonRegion	1	36.49	92.55	12.09	30.46	0.73	10.40	4.54
14	E2a_E4a	KnownJunction	1	116.91	268.15	20.84	60.47	4.26	34.38	13.53
15	ER3a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	ER4a	ExonRegion	0	260.19	896.30	140.16	282.41	62.04	140.15	128.55
17	E4a_E5a	KnownJunction	0	270.18	762.63	173.28	227.84	73.61	111.33	143.39
18	E4a_E6a	NovelJunction	0	5.41	12.01	0.79	7.50	0.00	0.00	0.00
19	ER5a	ExonRegion	0	251.46	667.82	160.61	226.57	80.79	97.71	144.45
20	E5_Da	NovelBoundary	1	9.31	33.86	4.87	3.12	0.00	5.12	1.63
21	E5a_E6a	KnownJunction	0	222.21	511.74	177.95	197.22	101.71	83.05	116.14
22	E5a_E7a	NovelJunction	0	4.86	16.71	1.91	20.10	1.18	3.89	0.00
23	ER6a	ExonRegion	0	212.31	518.44	166.50	230.12	123.23	81.16	151.31
24	E6_Da	NovelBoundary	0	70.62	194.83	18.71	40.91	5.42	19.56	15.91
25	E6a_E7a	KnownJunction	0	213.86	472.47	130.12	229.03	120.96	60.43	159.09
26	I6	Intron	1	26.52	43.93	6.76	6.84	2.22	5.33	5.51
27	I6_AR1	ActiveIntronRegion	1	57.14	135.43	20.09	19.22	5.14	20.21	12.46
28	I6_SR1	SilentIntronRegion	1	38.48	80.38	11.25	13.88	3.61	8.60	10.41
29	I6_AR2	ActiveIntronRegion	1	26.13	61.09	6.10	13.54	4.51	3.85	12.05
30	I6_AR3	ActiveIntronRegion	1	27.10	51.69	8.07	12.47	4.05	5.24	10.36
31	I6_AR4	ActiveIntronRegion	1	41.20	65.33	9.86	12.33	5.31	7.97	6.60
32	I6_AR5	ActiveIntronRegion	1	46.59	71.22	9.48	14.65	4.25	9.19	6.83
33	I6_AR6	ActiveIntronRegion	1	34.89	86.11	9.64	8.59	3.52	14.59	8.25
34	I6_SR2	SilentIntronRegion	0	16.80	5.38	4.84	0.00	0.46	2.28	3.08
35	I6_AR7	ActiveIntronRegion	1	25.29	26.28	5.79	4.71	2.26	2.45	5.41
36	E7_Aa	NovelBoundary	1	21.95	14.03	1.58	0.00	3.50	0.00	2.72
37	ER7a	ExonRegion	0	272.90	555.21	175.17	239.82	132.24	77.36	170.84
38	E7_Da	NovelBoundary	1	22.18	1.18	6.34	0.00	0.00	0.00	0.00
39	E7a_E8a	KnownJunction	0	277.30	524.69	195.94	207.03	166.51	70.91	175.13
40	ER8a	ExonRegion	0	291.42	485.00	165.48	226.96	158.81	63.18	155.61
41	E8_Da	KnownBoundary	0	22.68	31.92	8.79	5.77	3.34	2.68	4.20
42	E8a_E9a	KnownJunction	0	241.20	302.83	137.32	157.91	148.46	44.03	122.76
43	E8a_E11a	KnownJunction	1	19.13	33.63	10.40	8.18	5.35	4.69	0.00
44	ER8b	ExonRegion	1	38.62	20.28	11.17	3.55	8.07	2.57	1.91
45	E8_Db	NovelBoundary	1	106.28	19.23	19.85	4.33	4.15	1.42	6.81
46	I8	Intron	1	43.97	13.41	9.66	2.33	1.84	1.00	1.40
47	I8_SR1	SilentIntronRegion	1	73.34	19.45	18.18	2.32	2.29	1.24	2.85
48	I8_AR1	ActiveIntronRegion	1	96.74	19.35	18.24	3.20	4.79	1.95	2.30
49	I8_AR2	ActiveIntronRegion	1	35.73	13.18	8.11	2.67	0.94	0.75	1.18
50	I8_SR3	SilentIntronRegion	1	26.62	11.55	6.57	2.05	1.14	0.88	0.93
51	E9_Aa	NovelBoundary	1	40.36	15.37	7.72	3.93	1.89	3.16	1.16
52	ER9a	ExonRegion	0	258.56	341.75	136.44	169.76	129.93	52.14	136.14
53	E9_Da	NovelBoundary	1	71.83	17.81	17.78	1.38	6.85	3.32	1.45
54	E9a_E10a	KnownJunction	0	199.96	283.73	130.93	137.22	120.96	60.11	150.18
55	I9	Intron	1	43.31	16.66	13.67	4.13	2.70	1.30	1.21
56	I9_SR1	SilentIntronRegion	1	43.23	20.83	11.62	5.33	2.84	1.35	1.28
57	I9_AR1	ActiveIntronRegion	1	46.90	12.23	18.17	2.65	2.97	1.64	1.34
58	I9_AR2	ActiveIntronRegion	1	42.38	6.62	15.60	2.06	1.48	0.00	0.57
59	E10_Aa	NovelBoundary	1	35.88	10.25	8.03	4.20	1.96	0.00	0.86
60	ER10a	ExonRegion	0	235.37	281.73	127.02	129.89	140.51	45.31	129.81
61	E10_Da	NovelBoundary	1	41.89	16.52	7.24	0.00	0.00	2.17	3.17
62	E10a_E11a	KnownJunction	0	234.41	252.13	133.67	121.86	116.99	47.70	110.09
63	E10a_E12a	KnownJunction	1	12.53	35.49	5.93	6.12	12.01	2.89	12.21
64	I10	Intron	1	46.64	32.02	11.84	4.77	2.25	1.37	2.08
65	I10_SR1	SilentIntronRegion	1	46.44	32.04	11.88	4.46	2.09	1.03	1.91
66	I10_AR1	ActiveIntronRegion	1	48.05	31.97	11.63	6.76	3.26	3.51	3.17
67	E11_Aa	NovelBoundary	1	150.86	65.39	28.02	16.20	5.49	6.75	2.61
68	ER11a	ExonRegion	0	327.04	292.55	170.43	146.07	133.27	51.52	124.21
69	E11_Da	NovelBoundary	1	81.78	41.98	13.19	13.55	7.01	5.09	1.45
70	E11a_E12a	KnownJunction	0	390.38	287.49	193.01	168.40	118.01	42.05	144.26
71	I11	Intron	1	29.08	7.46	8.81	4.38	1.44	1.08	1.16
72	I11_AR1	ActiveIntronRegion	1	29.59	7.59	8.97	4.47	1.48	1.11	1.18
73	E12_Aa	NovelBoundary	1	88.21	49.05	19.80	17.09	9.20	3.46	5.85
74	ER12a	ExonRegion	0	365.73	360.86	175.64	166.54	151.74	58.18	133.82
75	E12_Da	NovelBoundary	1	47.50	31.92	10.52	5.74	3.43	1.66	2.32
76	E12a_E13a	KnownJunction	0	329.34	332.89	164.61	166.94	143.78	56.07	102.67
77	I12	Intron	1	48.74	31.93	10.90	6.31	3.66	3.24	1.66
78	I12_SR1	SilentIntronRegion	1	39.52	24.89	10.43	3.96	1.21	0.45	2.34
79	I12_AR1	ActiveIntronRegion	1	43.67	24.95	8.27	3.82	1.35	0.42	0.93
80	I12_SR2	SilentIntronRegion	1	37.80	27.38	10.40	4.48	3.18	4.11	1.41
81	I12_AR2	ActiveIntronRegion	1	62.81	41.40	12.92	9.78	5.99	4.89	2.08
82	E13_Aa	NovelBoundary	1	63.67	37.80	15.63	10.59	1.91	1.15	3.20
83	ER13a	ExonRegion	0	192.40	240.21	101.63	103.76	77.87	44.48	74.14
84	E13_Da	KnownBoundary	1	45.16	38.88	25.87	24.63	21.67	13.02	17.89
85	ER13b	ExonRegion	0	43.78	40.22	32.44	29.09	20.08	6.45	18.46
86	IG9_AR1	ActiveIntergenicRegion	0	10.71	3.32	1.80	0.88	0.78	1.52	3.18
87	IG9_AR6	ActiveIntergenicRegion	0	1.24	4.63	1.42	2.69	8.47	0.00	1.70