Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	KRR1	Gene	0	137.36	103.44	225.11	138.12	121.48	146.37	90.99
2	229214	Transcript	0	315.46	245.19	501.09	333.96	270.30	362.24	205.43
3	IG35_AR5	ActiveIntergenicRegion	0	6.25	1.61	1.09	0.55	0.95	0.27	9.70
4	IG35_AR4	ActiveIntergenicRegion	0	11.02	1.71	1.31	1.15	0.55	0.15	10.88
5	IG35_SR3	SilentIntergenicRegion	0	2.51	0.44	1.35	1.25	0.00	1.23	7.54
6	IG35_AR3	ActiveIntergenicRegion	0	3.14	0.00	1.35	1.25	0.00	1.23	9.26
7	IG35_AR2	ActiveIntergenicRegion	0	20.09	23.78	5.61	14.79	0.00	0.00	2.70
8	IG35_SR1	SilentIntergenicRegion	0	21.21	31.93	9.81	25.62	0.00	0.73	1.21
9	IG35_AR1	ActiveIntergenicRegion	0	10.76	15.22	5.13	14.97	0.00	0.77	1.39
10	ER1a	ExonRegion	0	149.06	124.72	226.57	158.14	194.18	135.75	109.42
11	E1a_E2a	KnownJunction	0	124.27	98.52	225.93	106.25	24.44	95.09	85.95
12	I1	Intron	1	34.47	39.19	29.96	32.98	9.26	14.31	9.71
13	I1_AR1	ActiveIntronRegion	1	40.55	53.93	38.13	38.52	13.24	18.87	14.22
14	I1_SR1	SilentIntronRegion	1	28.99	25.75	22.55	28.00	5.63	10.17	5.59
15	E2_Aa	NovelBoundary	1	61.15	48.34	37.87	54.07	4.26	25.30	7.95
16	ER2a	ExonRegion	0	261.36	260.93	398.70	343.41	182.01	352.99	189.88
17	E2_Da	NovelBoundary	1	65.74	54.67	46.52	57.84	0.00	9.81	6.15
18	E2a_E3a	KnownJunction	0	244.29	286.88	429.44	380.22	534.00	468.73	233.14
19	I2	Intron	1	41.91	38.97	36.74	31.43	0.97	8.40	4.37
20	I2_AR2	ActiveIntronRegion	1	37.67	37.90	32.37	29.50	1.03	10.71	3.70
21	I2_SR2	SilentIntronRegion	1	48.00	42.79	42.57	35.44	0.97	7.89	5.15
22	E3_Aa	NovelBoundary	1	35.38	42.87	28.48	22.24	0.99	7.50	6.79
23	ER3a	ExonRegion	0	343.21	372.59	573.06	490.10	317.29	581.53	271.97
24	E3_Da	NovelBoundary	1	72.75	72.93	63.20	40.34	0.90	11.07	10.18
25	E3a_E4a	KnownJunction	0	295.46	360.86	540.90	478.54	221.63	508.55	294.98
26	E3a_E6a	NovelJunction	1	0.00	9.25	0.00	1.68	0.00	0.00	0.00
27	I3	Intron	1	30.16	29.02	22.16	21.30	5.03	6.01	1.31
28	I3_AR1	ActiveIntronRegion	1	31.99	30.79	23.49	22.61	5.34	6.38	1.39
29	E4_Aa	NovelBoundary	1	49.39	33.81	40.27	31.64	2.33	3.48	7.19
30	ER4a	ExonRegion	0	381.60	360.18	683.88	506.57	291.91	537.02	302.40
31	E4_Da	NovelBoundary	1	54.84	55.04	60.21	35.33	3.07	6.99	12.67
32	E4a_E5a	KnownJunction	0	288.95	267.44	575.04	378.16	331.89	378.90	251.16
33	E4a_E6a	NovelJunction	0	3.49	8.70	16.90	16.77	0.00	10.85	0.00
34	E5_Aa	NovelBoundary	1	53.27	54.54	47.77	23.57	7.98	9.06	4.13
35	ER5a	ExonRegion	0	296.38	268.27	595.12	383.10	313.57	357.71	275.81
36	E5_Da	NovelBoundary	1	39.20	54.54	58.16	34.41	0.95	7.29	9.69
37	E5a_E6a	KnownJunction	0	334.85	264.32	584.50	315.99	349.37	352.71	225.28
38	I5	Intron	1	60.81	53.66	62.41	37.02	2.87	10.56	9.09
39	I5_AR1	ActiveIntronRegion	1	44.71	34.46	51.18	26.14	3.71	6.39	5.73
40	I5_SR1	SilentIntronRegion	1	64.34	57.81	64.95	39.39	2.71	11.46	9.81
41	E6_Aa	NovelBoundary	1	42.23	54.38	61.10	35.06	1.18	6.35	5.50
42	ER6a	ExonRegion	0	347.87	248.09	661.54	333.05	310.09	344.46	251.67
43	E6_Da	NovelBoundary	1	44.03	63.10	63.66	36.79	2.07	5.90	9.70
44	E6a_E7a	KnownJunction	0	268.27	214.43	585.38	326.20	271.82	317.18	232.11
45	I6	Intron	1	55.60	46.97	67.66	29.73	4.31	7.10	8.74
46	I6_SR1	SilentIntronRegion	1	41.62	24.80	39.31	17.29	7.32	2.76	5.60
47	I6_AR1	ActiveIntronRegion	1	72.71	58.97	77.27	34.63	7.48	6.32	9.13
48	I6_SR2	SilentIntronRegion	1	59.56	52.66	70.02	33.97	4.57	7.49	9.53
49	I6_AR2	ActiveIntronRegion	1	44.48	31.96	67.29	17.50	2.32	7.07	6.80
50	E7_Aa	NovelBoundary	1	40.96	24.04	47.29	31.07	1.80	7.37	8.60
51	ER7a	ExonRegion	0	460.28	319.39	720.05	434.59	325.41	433.79	249.39
52	E7_Da	NovelBoundary	1	30.39	56.64	46.53	45.59	1.15	8.23	8.24
53	E7a_E8a	KnownJunction	0	434.86	305.85	599.43	421.70	300.42	508.55	261.72
54	I7	Intron	1	56.89	95.22	89.08	94.55	1.14	17.42	15.07
55	I7_AR1	ActiveIntronRegion	1	60.48	105.45	90.26	103.93	1.42	20.00	16.94
56	I7_SR1	SilentIntronRegion	1	50.49	76.79	87.18	77.64	0.64	12.75	11.69
57	E8_Aa	NovelBoundary	1	57.51	63.00	83.03	76.18	3.23	14.15	12.24
58	ER8a	ExonRegion	0	473.33	272.98	564.56	389.64	326.31	441.42	186.52
59	E8_Da	NovelBoundary	1	60.18	56.64	85.76	84.42	0.00	13.37	13.29
60	E8a_E9a	KnownJunction	1	505.32	245.43	515.23	330.94	331.94	375.57	143.89
61	E9_Aa	NovelBoundary	1	51.61	110.71	101.20	205.62	0.00	25.67	11.59
62	ER9a	ExonRegion	0	368.90	187.76	466.77	273.63	201.86	331.48	157.98
63	E9_Da	NovelBoundary	1	84.48	311.55	152.90	561.30	5.46	71.13	25.77
64	E9a_E10a	KnownJunction	0	368.90	173.86	489.87	263.57	252.15	327.55	147.69
65	E10_Aa	NovelBoundary	1	253.04	730.87	420.00	1132.11	4.40	120.55	91.86
66	ER10a	ExonRegion	0	46.56	26.15	84.70	31.46	55.40	33.54	32.18