Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	R3HDM2	Gene	0	103.49	44.89	53.37	22.32	90.10	63.64	133.01
2	402412	Transcript	0	73.45	54.91	56.68	16.01	103.30	59.20	132.75
3	347140	Transcript	0	0	0	0	0	0	0	0
4	358907	Transcript	0	0	0	0	0	0	0	0
5	403821	Transcript	0	1.59	0.70	0.67	0.21	0.50	1.80	0.48
6	393811	Transcript	0	10.65	3.74	3.41	1.13	5.06	6.37	6.12
7	ER1a	ExonRegion	0	1.90	3.06	0.98	0.72	0.77	1.60	3.86
8	E1a_E2a	KnownJunction	0	10.15	11.59	9.97	3.03	3.20	9.35	15.22
9	I1_AR1	ActiveIntronRegion	0	14.29	5.20	16.63	2.88	7.45	2.22	3.12
10	ER2a	ExonRegion	0	27.04	21.12	16.42	7.70	22.42	16.06	40.68
11	E2a_E4a	KnownJunction	0	40.22	27.32	20.56	14.11	21.21	11.79	62.89
12	ER3a	ExonRegion	0	7.92	3.47	1.99	1.07	2.48	5.27	2.32
13	E3a_E4b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	ER4a	ExonRegion	0	41.69	30.07	20.49	13.72	22.47	24.52	66.11
15	ER4b	ExonRegion	0	88.85	44.21	58.66	19.05	57.02	55.52	116.91
16	E4a_E5a	KnownJunction	0	57.08	20.44	44.92	10.46	59.31	56.44	88.67
17	E5_Aa	NovelBoundary	1	25.87	0.00	15.85	0.00	0.00	0.00	1.62
18	ER5a	ExonRegion	0	109.56	37.83	55.01	20.49	93.31	67.14	119.03
19	E5a_E6a	KnownJunction	0	152.91	51.52	70.80	27.06	125.15	68.07	125.76
20	ER6a	ExonRegion	0	232.31	59.39	110.50	29.02	124.49	99.57	175.10
21	E6a_E7a	KnownJunction	1	232.91	62.84	133.85	23.81	138.64	95.84	149.33
22	ER7a	ExonRegion	1	360.45	72.12	164.38	36.68	178.00	120.98	198.88
23	E7a_E8a	KnownJunction	1	460.61	71.20	188.34	43.02	226.08	135.58	237.56
24	ER8a	ExonRegion	1	357.52	68.25	152.60	40.55	172.40	128.53	205.05
25	E8_Da	NovelBoundary	1	29.59	10.11	15.00	2.93	4.13	5.41	1.65
26	E8a_E9a	KnownJunction	0	236.16	52.60	99.44	29.10	101.80	81.82	162.35
27	E8a_E10b	NovelJunction	0	9.23	7.28	4.45	4.23	0.00	11.68	1.99
28	I8	Intron	1	36.36	6.50	22.90	4.97	12.03	4.89	5.22
29	I8_AR2	ActiveIntronRegion	0	21.31	7.18	16.87	3.17	7.58	3.68	4.91
30	I8_SR1	SilentIntronRegion	1	21.31	11.27	12.68	0.82	5.16	3.30	4.60
31	I8_AR3	ActiveIntronRegion	1	43.46	6.23	28.28	5.97	14.41	5.91	5.46
32	E9_Aa	NovelBoundary	0	13.40	11.14	12.85	4.77	9.08	17.85	2.05
33	ER9a	ExonRegion	0	272.85	53.29	128.62	26.85	153.98	79.42	196.70
34	E9a_E10b	KnownJunction	0	261.00	51.12	124.43	22.92	157.96	70.99	185.75
35	ER10a	ExonRegion	0	6.44	0.66	3.12	0.28	6.45	1.59	1.28
36	E10_Ab	KnownBoundary	0	5.41	1.10	2.87	0.00	2.93	4.05	0.00
37	ER10b	ExonRegion	0	206.28	70.50	114.52	32.79	141.60	94.31	205.96
38	E10a_E11a	KnownJunction	0	180.80	76.66	114.72	38.06	99.89	100.61	211.03
39	ER11a	ExonRegion	0	175.54	95.61	119.71	34.41	126.31	107.57	222.18
40	E11a_E12a	KnownJunction	1	100.77	49.10	79.15	9.94	116.26	66.57	139.63
41	E11a_E13a	KnownJunction	1	12.40	23.41	8.67	4.33	12.15	16.21	45.40
42	E11a_E15a	KnownJunction	0	22.45	10.56	6.44	3.12	6.29	11.39	15.72
43	ER12a	ExonRegion	0	113.50	45.00	71.20	18.99	100.61	67.03	140.51
44	E12a_E13a	KnownJunction	0	88.82	32.87	55.56	21.89	78.93	40.79	118.21
45	ER13a	ExonRegion	0	110.85	60.40	74.00	28.21	102.27	66.47	176.32
46	E13a_E14a	KnownJunction	0	5.37	0.00	0.00	1.41	0.00	1.63	0.00
47	E13a_E15a	KnownJunction	0	73.45	54.91	56.68	16.01	103.30	59.20	132.75
48	ER14a	ExonRegion	0	4.43	3.46	0.18	1.25	0.07	1.09	2.34
49	E14a_E15a	KnownJunction	0	2.02	5.15	0.00	0.00	0.00	0.00	3.04
50	ER15a	ExonRegion	0	124.69	69.62	77.47	35.42	123.03	87.98	198.89
51	E15_Da	NovelBoundary	1	32.13	0.00	15.98	2.71	1.13	0.00	1.52
52	E15a_E16a	KnownJunction	0	94.03	56.14	56.04	36.11	138.55	85.95	191.58
53	ER16a	ExonRegion	0	111.97	71.04	60.20	38.76	134.37	101.04	167.75
54	E16a_E17a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	2.65	0.00
55	E16a_E18a	KnownJunction	0	137.99	68.20	67.44	26.74	115.13	110.87	234.55
56	ER17a	ExonRegion	0	0.02	0.02	1.35	0.00	0.03	1.07	0.07
57	E17a_E18a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
58	E18_Aa	NovelBoundary	1	49.20	1.63	25.78	3.09	0.00	0.00	0.00
59	ER18a	ExonRegion	0	155.09	80.00	83.06	41.09	149.93	100.48	272.74
60	E18a_E19a	KnownJunction	0	125.73	46.19	73.63	31.15	96.11	58.66	219.69
61	E18a_E20a	NovelJunction	0	5.37	17.42	3.20	5.58	0.00	4.66	8.80
62	ER19a	ExonRegion	0	88.08	45.78	56.76	23.79	118.00	63.88	176.57
63	E19a_E20a	KnownJunction	0	80.20	27.19	52.58	14.39	92.49	51.88	156.00
64	ER20a	ExonRegion	0	105.37	59.54	62.18	23.03	120.53	72.78	186.90
65	E20a_E21a	KnownJunction	0	197.53	77.55	93.52	21.40	168.22	82.30	275.89
66	ER21a	ExonRegion	0	168.35	80.88	88.76	34.30	142.07	90.40	262.81
67	E21a_E22a	KnownJunction	0	201.13	81.81	86.58	40.45	151.92	83.00	259.73
68	ER22a	ExonRegion	0	164.61	77.61	88.03	45.64	180.49	97.32	293.15
69	E22a_E23a	KnownJunction	0	126.56	71.85	78.42	45.49	124.32	108.67	287.90
70	E23_Aa	NovelBoundary	1	47.18	1.63	30.18	0.00	0.99	0.00	1.73
71	ER23a	ExonRegion	0	104.49	71.02	63.29	37.04	116.99	91.54	249.15
72	E23a_E24a	KnownJunction	0	135.31	61.40	69.74	42.64	125.22	116.12	300.67
73	ER24a	ExonRegion	0	80.65	60.22	46.39	32.46	111.29	88.26	209.12
74	E24a_E25a	KnownJunction	0	67.11	63.18	40.08	20.81	89.17	67.21	157.65
75	I24	Intron	1	24.34	8.50	14.70	4.53	12.09	10.97	3.46
76	I24_AR1	ActiveIntronRegion	0	13.68	9.71	12.66	5.29	8.37	9.58	3.65
77	I24_AR3	ActiveIntronRegion	1	52.58	13.60	24.76	6.92	22.36	19.84	5.33
78	I24_AR4	ActiveIntronRegion	1	33.23	9.98	21.75	5.23	12.94	15.96	2.96
79	E25_Aa	NovelBoundary	1	30.63	8.96	19.04	7.04	21.83	21.04	2.28
80	ER25a	ExonRegion	0	103.72	53.75	53.54	25.37	110.22	83.76	196.46
81	E25_Da	NovelBoundary	1	21.66	4.41	16.17	4.12	16.07	12.11	3.73
82	E25a_E26a	KnownJunction	1	65.47	50.02	30.42	23.62	74.25	86.62	183.21
83	E26_Aa	NovelBoundary	0	21.81	8.70	8.94	6.18	11.34	25.30	2.98
84	ER26a	ExonRegion	0	77.57	40.18	34.84	25.98	87.88	62.79	152.56
85	E26a_E27a	KnownJunction	0	100.11	42.32	48.95	34.46	79.03	71.80	162.52
86	ER27a	ExonRegion	0	104.51	44.87	45.82	23.55	100.52	72.83	118.07
87	ER27b	ExonRegion	0	3.23	0.00	3.70	0.00	6.05	12.67	3.73
88	ER27c	ExonRegion	0	3.07	0.00	0.68	0.00	2.43	6.13	1.35