Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AGAP2	Gene	0	2.93	7.00	2.75	2.63	5.24	6.53	6.62
2	257897	Transcript	0	0.00	0.00	1.12	0.57	5.01	0.13	0.77
3	328568	Transcript	0	0.02	0.09	0.30	0.08	0.54	1.02	0.03
4	IG31	Intergenic	0	4.31	3.00	7.75	5.55	0.91	8.02	1.13
5	IG31_AR4	ActiveIntergenicRegion	0	2.94	2.84	8.98	5.12	1.04	8.11	2.72
6	IG31_AR3	ActiveIntergenicRegion	0	10.61	5.16	18.33	13.22	1.95	17.01	1.87
7	IG31_SR2	SilentIntergenicRegion	0	5.09	4.25	8.41	5.34	1.63	9.03	1.51
8	ER1a	ExonRegion	0	0.01	0.00	0.21	0.38	2.27	0.38	0.11
9	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	6.45	0.00	0.89
10	ER2a	ExonRegion	0	0.00	0.16	0.43	0.32	0.71	0.72	0.09
11	E2a_E3a	KnownJunction	0	0.00	0.00	0.89	0.00	1.98	4.34	0.00
12	ER3a	ExonRegion	0	0.77	0.00	2.12	0.00	6.47	3.16	0.41
13	E3a_E4a	KnownJunction	0	0.72	0.00	2.97	0.00	6.80	0.00	0.00
14	ER4a	ExonRegion	0	0.40	1.05	1.80	0.45	8.73	1.71	0.25
15	E4a_E5a	KnownJunction	0	1.03	0.00	2.16	1.68	5.42	6.46	0.89
16	ER5a	ExonRegion	0	0.94	0.04	3.99	0.64	11.38	4.11	1.76
17	E5a_E6a	KnownJunction	0	0.73	0.00	5.13	0.00	14.22	1.63	1.42
18	ER6a	ExonRegion	0	0.46	0.60	3.03	0.64	12.01	2.26	0.85
19	E6a_E7a	KnownJunction	0	0.00	0.00	4.27	0.00	11.13	0.00	0.62
20	ER7a	ExonRegion	0	0.00	0.00	3.19	0.01	10.34	0.00	0.82
21	E7a_E8a	KnownJunction	0	0.00	0.00	3.54	0.00	9.73	0.00	0.00
22	ER8a	ExonRegion	0	0.00	0.00	1.02	1.69	4.97	2.50	0.00
23	E8a_E9a	KnownJunction	0	0.00	0.00	1.41	0.00	10.00	0.00	0.00
24	ER9a	ExonRegion	0	0.00	0.00	2.01	0.00	9.06	3.28	1.29
25	E9a_E10a	KnownJunction	0	0.00	0.00	1.38	0.00	7.54	2.52	0.00
26	ER10a	ExonRegion	0	0.00	0.00	1.70	0.96	8.17	2.55	0.95
27	E10a_E11a	KnownJunction	0	0.00	0.00	3.75	1.08	10.79	3.32	0.86
28	ER11a	ExonRegion	0	0.53	0.00	3.28	1.01	19.15	4.82	1.59
29	E11a_E12a	KnownJunction	0	0.00	0.00	1.42	0.00	16.04	1.66	1.12
30	ER12a	ExonRegion	0	0.00	0.00	2.17	2.24	9.44	0.97	0.02
31	E12a_E13a	KnownJunction	0	0.00	0.00	0.76	3.25	11.64	1.13	0.00
32	ER13a	ExonRegion	0	0.00	0.00	3.24	1.67	11.01	1.45	0.08
33	E13a_E14a	KnownJunction	0	0.00	0.00	5.52	0.00	10.35	0.00	0.66
34	ER14a	ExonRegion	0	0.45	0.00	2.05	1.64	10.30	0.72	1.16
35	E14a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
36	E14a_E16a	KnownJunction	0	0.00	0.00	3.16	1.33	6.32	0.00	1.32
37	ER15a	ExonRegion	0	0.08	0.28	0.18	0.06	0.03	0.04	0.08
38	E15a_E16a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	I15	Intron	0	7.43	22.89	3.07	3.24	1.76	9.96	17.74
40	I15_AR1	ActiveIntronRegion	0	7.49	23.05	3.10	3.26	1.77	10.02	17.86
41	E16_Aa	NovelBoundary	0	26.84	67.60	20.58	17.04	2.95	41.14	41.50
42	ER16a	ExonRegion	0	14.18	42.62	12.41	7.44	15.99	27.52	32.93
43	E16_Da	NovelBoundary	0	30.78	70.78	22.04	14.66	4.47	43.36	78.45
44	E16a_E17a	KnownJunction	0	0.00	0.00	3.25	0.00	11.39	4.66	0.82
45	I16	Intron	0	18.18	52.40	14.48	10.90	5.73	35.44	53.68
46	I16_AR1	ActiveIntronRegion	0	18.39	52.98	14.65	11.03	5.80	35.83	54.28
47	E17_Aa	NovelBoundary	0	41.24	74.30	22.50	11.97	6.13	63.78	83.64
48	ER17a	ExonRegion	0	10.87	29.02	9.04	4.84	14.92	14.87	31.82
49	E17_Da	NovelBoundary	0	32.85	65.97	21.99	16.96	5.23	40.28	70.74
50	E17a_E18a	KnownJunction	0	1.03	0.00	3.35	1.35	10.86	4.10	0.00
51	I17	Intron	0	10.23	18.69	6.05	4.78	2.90	13.97	22.28
52	I17_AR1	ActiveIntronRegion	0	10.43	18.98	6.16	4.87	2.95	14.18	22.68
53	E18_Aa	NovelBoundary	0	35.67	77.87	26.67	13.06	6.99	48.88	81.76
54	ER18a	ExonRegion	0	21.67	51.18	13.99	16.34	14.05	46.39	46.38
55	E18_Da	NovelBoundary	0	31.21	57.09	18.70	19.42	3.18	58.99	60.91
56	E18a_E19a	KnownJunction	0	0.00	0.00	0.00	3.82	4.93	3.48	0.00
57	I18	Intron	0	26.57	36.12	16.81	17.45	3.12	29.95	44.69
58	I18_AR1	ActiveIntronRegion	0	26.97	36.65	17.05	17.71	3.17	30.37	45.32
59	E19_Aa	NovelBoundary	0	21.38	77.29	18.39	20.32	1.06	62.28	73.42
60	ER19a	ExonRegion	0	16.57	48.09	12.86	11.70	7.81	34.73	43.17
61	E19_Da	NovelBoundary	0	6.68	21.99	2.93	4.69	0.00	14.02	6.95
62	E19a_E20a	KnownJunction	0	0.00	0.00	0.68	0.00	0.00	1.66	0.54
63	ER20a	ExonRegion	0	1.66	1.97	0.72	2.26	1.68	3.26	2.44
64	IG30_AR2	ActiveIntergenicRegion	0	3.35	9.57	3.38	6.95	1.38	9.04	6.82
65	IG30_SR1	SilentIntergenicRegion	0	3.29	5.35	2.58	4.55	0.61	10.61	12.85