Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ARHGAP9	Gene	0	0.46	0.52	0.67	0.69	6.67	1.57	0.69
2	393797	Transcript	0	0.71	1.36	0.86	1.17	2.42	1.14	0.87
3	340423	Transcript	0	0.19	0.00	0.22	0.00	6.41	0.56	0.34
4	356411	Transcript	0	0	0	0	0	0	0	0
5	393791	Transcript	0	0	0	0	0	0	0	0
6	ER1a	ExonRegion	0	1.42	2.72	1.72	2.33	4.84	2.28	1.74
7	E1a_E2b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	E2_Aa	NovelBoundary	0	993.55	788.54	625.90	650.05	499.85	579.92	610.69
9	ER2a	ExonRegion	0	0.37	0.00	0.45	0.00	12.82	1.12	0.67
10	E2_Ab	KnownBoundary	0	195.27	101.33	132.74	88.32	118.28	66.57	100.42
11	ER2b	ExonRegion	0	1.49	0.00	1.91	0.00	25.69	0.74	0.79
12	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	2.07	0.00	0.89
13	ER3a	ExonRegion	0	0.00	0.00	0.68	0.31	3.13	0.45	0.67
14	E3_Da	NovelBoundary	0	0.00	0.00	0.00	1.46	8.69	0.00	0.00
15	E3a_E4b	KnownJunction	0	0.00	0.00	0.68	1.22	1.94	1.39	0.73
16	ER4a	ExonRegion	0	0.77	0.00	0.01	0.02	2.25	0.02	0.01
17	E4_Ab	KnownBoundary	0	0.72	0.00	0.00	0.00	3.00	0.00	0.00
18	ER4b	ExonRegion	0	0.15	0.00	0.18	2.49	5.12	1.14	0.64
19	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	1.44	0.00	0.00	0.64
20	ER5a	ExonRegion	0	1.22	0.55	0.88	1.21	3.46	1.92	0.61
21	E5a_E6a	KnownJunction	0	0.00	0.00	2.62	0.00	2.95	2.52	0.00
22	ER6a	ExonRegion	0	0.54	0.00	1.05	0.00	3.74	2.03	0.82
23	E6a_E7a	KnownJunction	0	0.00	0.00	0.89	0.00	3.25	2.57	0.89
24	ER7a	ExonRegion	0	0.00	0.42	0.34	0.00	3.62	0.50	1.86
25	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	1.13	0.85
26	ER8a	ExonRegion	0	0.51	0.64	0.62	0.00	2.03	1.06	0.67
27	E8a_E9a	KnownJunction	0	0.00	1.23	1.57	0.00	3.48	0.00	0.00
28	ER9a	ExonRegion	0	0.00	0.21	0.34	0.00	3.60	2.83	0.54
29	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	3.11	0.00	0.00
30	ER10a	ExonRegion	0	0.00	0.00	0.03	1.01	3.11	1.07	0.87
31	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	1.54	3.04	1.42	1.32
32	ER11a	ExonRegion	0	0.00	0.00	0.54	0.36	2.48	2.05	0.53
33	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	3.14	4.66	0.76
34	ER12a	ExonRegion	0	0.00	0.00	0.00	0.00	1.67	1.21	0.00
35	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	2.14	0.00	0.00
36	ER13a	ExonRegion	0	0.00	0.00	0.00	0.00	3.98	0.00	0.00
37	E13_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
38	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	2.10	0.00	0.00
39	ER13b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	E13b_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
41	ER14a	ExonRegion	0	0.00	0.00	0.38	0.15	3.25	0.00	0.00
42	E14a_E15a	KnownJunction	0	0.00	0.00	0.00	1.27	2.95	0.00	0.00
43	ER15a	ExonRegion	0	0.00	0.00	0.38	1.52	8.10	0.00	0.34
44	E15a_E16a	KnownJunction	0	0.00	0.00	0.60	0.00	5.16	0.00	0.75
45	ER16a	ExonRegion	0	0.02	0.00	1.69	0.00	10.75	0.00	0.25
46	E16a_E17a	KnownJunction	0	0.00	0.00	0.76	0.00	9.59	0.00	0.67
47	ER17a	ExonRegion	0	1.63	0.00	0.87	2.45	14.36	0.00	0.99
48	E17a_E18a	KnownJunction	0	1.59	0.00	3.25	4.28	20.15	0.00	0.76
49	ER18a	ExonRegion	0	1.66	0.00	1.81	1.73	16.71	0.00	0.39
50	E18a_E19a	KnownJunction	0	0.85	0.00	0.00	0.00	18.49	0.00	0.00
51	ER19a	ExonRegion	0	0.28	0.00	0.91	1.39	17.44	1.04	1.10
52	E19a_E20a	KnownJunction	0	1.00	0.00	0.85	0.00	9.68	1.66	0.00
53	E19a_E20b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
54	E20_Ab	NovelBoundary	0	0.80	0.00	0.62	0.00	8.48	2.25	0.76
55	ER20a	ExonRegion	0	0.77	0.00	1.08	0.00	12.11	2.06	0.67
56	ER20b	ExonRegion	0	0.23	0.26	0.35	0.76	13.77	1.90	0.75
57	E20a_E21a	KnownJunction	0	0.00	1.29	0.00	3.06	24.85	1.45	0.89
58	ER21a	ExonRegion	0	0.09	1.44	0.32	0.51	8.86	4.15	0.41
59	ER21b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00