Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	MLL2	Gene	0	61.42	84.80	95.44	115.31	60.00	47.78	62.31
2	301067	Transcript	0	72.10	98.03	115.10	130.34	66.16	51.23	72.29
3	ER1a	ExonRegion	0	4.39	20.31	17.49	32.65	7.31	7.46	6.55
4	E1a_E2a	KnownJunction	0	21.15	52.12	48.49	83.03	11.96	33.10	23.26
5	ER2a	ExonRegion	0	17.61	60.00	50.49	88.51	13.48	25.15	21.78
6	E2a_E3a	KnownJunction	0	27.51	48.05	57.37	85.26	12.01	21.33	23.49
7	ER3a	ExonRegion	0	30.66	57.90	56.85	88.78	16.32	31.43	21.66
8	E3a_E4a	KnownJunction	0	26.52	63.60	46.09	97.96	17.61	27.09	18.62
9	E3a_E5a	NovelJunction	0	1.69	5.33	0.00	8.45	0.00	0.00	7.82
10	ER4a	ExonRegion	0	35.28	83.35	55.85	102.45	20.73	34.62	27.85
11	E4a_E5a	KnownJunction	0	37.84	81.70	57.45	119.28	28.72	33.10	31.97
12	ER5a	ExonRegion	0	35.97	103.96	68.60	114.26	25.28	36.80	38.15
13	E5a_E6a	KnownJunction	0	58.38	110.76	97.80	123.97	27.76	30.39	47.47
14	ER6a	ExonRegion	0	55.54	113.26	91.70	133.14	32.92	42.81	54.45
15	E6a_E7a	KnownJunction	0	75.42	105.90	117.75	151.09	33.36	57.35	49.36
16	E7_Aa	NovelBoundary	0	35.05	36.39	47.97	63.77	16.53	26.48	26.94
17	ER7a	ExonRegion	0	101.63	117.99	141.86	153.42	47.52	57.12	73.12
18	E7a_E8a	KnownJunction	0	82.82	104.48	104.50	152.82	27.48	43.71	52.80
19	ER8a	ExonRegion	0	78.89	124.12	116.02	139.34	39.19	51.69	58.62
20	E8a_E9a	KnownJunction	1	137.73	147.75	164.43	170.05	71.90	67.43	60.44
21	E9_Aa	NovelBoundary	1	37.39	4.39	42.81	0.00	0.00	0.00	0.89
22	ER9a	ExonRegion	0	66.40	143.10	111.95	145.75	33.69	59.44	50.60
23	E9a_E10a	KnownJunction	0	55.53	90.82	98.80	144.02	16.00	47.73	41.23
24	ER10a	ExonRegion	0	33.41	67.76	52.09	107.04	25.94	33.85	37.14
25	E10a_E11a	KnownJunction	0	63.86	73.88	79.78	139.79	39.56	77.37	58.43
26	ER11a	ExonRegion	0	39.17	60.47	59.85	96.66	21.67	28.35	34.79
27	E11a_E12a	KnownJunction	1	60.88	51.44	60.21	80.84	28.52	21.15	30.60
28	ER12a	ExonRegion	0	57.59	51.58	68.01	87.44	36.84	20.24	35.86
29	E12a_E13a	KnownJunction	1	69.55	54.15	76.85	87.75	27.48	25.46	30.78
30	ER13a	ExonRegion	0	106.51	84.42	116.78	127.17	59.91	30.65	63.73
31	E13a_E14a	KnownJunction	1	102.93	108.11	116.62	118.04	44.58	24.17	79.88
32	ER14a	ExonRegion	1	85.03	87.25	97.97	110.34	51.17	22.85	64.30
33	E14a_E15a	KnownJunction	1	81.18	79.81	84.02	104.84	47.40	18.04	62.04
34	E14a_E16a	NovelJunction	0	0.82	1.63	2.57	9.89	0.00	5.90	2.32
35	ER15a	ExonRegion	0	60.33	76.30	69.28	101.70	45.81	23.02	62.03
36	E15a_E16a	KnownJunction	1	40.79	86.46	59.41	109.91	45.18	21.71	46.51
37	ER16a	ExonRegion	0	41.02	82.94	53.96	128.52	35.73	27.05	51.04
38	E16a_E17a	KnownJunction	0	30.99	91.42	49.87	125.05	28.52	26.80	46.05
39	ER17a	ExonRegion	1	27.88	78.13	58.88	128.13	37.03	22.56	50.07
40	E17a_E18a	KnownJunction	1	36.85	65.60	66.19	115.00	40.78	20.53	50.68
41	ER18a	ExonRegion	1	42.92	81.17	65.11	111.21	46.03	19.87	50.82
42	E18a_E19a	KnownJunction	0	37.84	82.36	51.52	92.00	48.99	21.79	48.63
43	ER19a	ExonRegion	0	39.84	88.95	62.16	121.05	39.77	28.76	53.62
44	E19a_E20a	KnownJunction	0	34.80	85.72	59.85	108.04	46.11	39.45	45.06
45	ER20a	ExonRegion	0	44.12	89.66	74.54	108.34	48.19	28.13	50.23
46	E20a_E21a	KnownJunction	0	42.31	79.02	83.52	87.42	71.03	29.64	49.97
47	ER21a	ExonRegion	0	39.85	68.45	57.36	75.96	33.37	26.46	31.85
48	E21a_E22a	KnownJunction	0	24.10	56.06	40.41	61.20	15.40	15.06	25.67
49	ER22a	ExonRegion	0	38.72	73.77	77.43	95.64	33.41	30.94	38.59
50	E22a_E23a	KnownJunction	0	49.19	82.33	96.74	102.81	40.27	37.87	43.70
51	ER23a	ExonRegion	0	53.87	86.08	96.09	112.91	39.44	44.08	49.21
52	E23a_E24a	KnownJunction	0	69.16	104.77	130.91	113.73	52.93	58.42	55.99
53	ER24a	ExonRegion	0	61.89	105.20	122.74	122.47	48.69	52.59	70.27
54	E24a_E25a	KnownJunction	0	53.27	97.02	116.01	129.22	43.02	46.90	73.35
55	ER25a	ExonRegion	0	68.88	121.43	147.80	146.93	48.65	58.00	82.25
56	E25a_E26a	KnownJunction	0	87.49	114.54	172.40	154.28	51.22	74.13	78.92
57	ER26a	ExonRegion	0	70.88	115.68	146.96	148.34	52.11	53.50	83.63
58	E26a_E27a	KnownJunction	0	60.99	90.29	106.41	114.68	42.60	46.95	67.64
59	ER27a	ExonRegion	0	48.28	68.45	99.19	96.73	30.89	39.55	53.02
60	E27a_E28a	KnownJunction	0	32.19	49.81	71.52	59.11	24.16	29.48	35.61
61	E27a_E29a	NovelJunction	1	1.03	0.00	0.89	0.00	0.00	0.00	11.44
62	ER28a	ExonRegion	0	54.14	81.26	89.28	94.31	33.10	36.88	49.56
63	E28a_E29a	KnownJunction	0	72.07	125.95	139.25	166.47	30.98	58.99	80.71
64	E29_Aa	NovelBoundary	1	32.81	7.96	61.66	4.04	0.92	3.16	2.44
65	ER29a	ExonRegion	0	75.52	121.24	139.17	150.65	47.15	69.34	93.43
66	E29a_E30a	KnownJunction	0	53.24	93.21	94.01	102.70	23.08	42.83	62.00
67	ER30a	ExonRegion	0	52.66	98.07	88.41	107.31	25.15	31.08	55.03
68	E30a_E31a	KnownJunction	0	46.03	90.61	83.19	112.43	19.99	29.96	48.66
69	ER31a	ExonRegion	0	38.53	54.59	64.75	86.98	21.83	32.65	39.71
70	E31a_E32a	KnownJunction	0	47.02	77.37	87.80	162.47	33.82	49.77	68.10
71	ER32a	ExonRegion	0	49.82	90.52	94.12	143.43	53.66	46.66	61.23
72	E32a_E33a	KnownJunction	0	45.75	61.42	87.47	92.43	54.54	37.52	55.72
73	ER33a	ExonRegion	0	48.79	73.51	83.58	115.31	31.27	44.96	48.49
74	E33a_E34a	KnownJunction	0	60.63	78.66	91.75	130.93	37.51	41.00	51.12
75	ER34a	ExonRegion	0	66.12	89.50	103.31	123.49	58.22	43.31	65.10
76	E34a_E35a	KnownJunction	0	77.94	106.66	137.91	129.52	89.38	38.14	87.05
77	ER35a	ExonRegion	0	91.61	108.81	167.51	146.05	88.67	41.02	93.07
78	E35a_E36a	KnownJunction	0	60.15	86.96	119.09	119.04	96.36	36.61	90.04
79	ER36a	ExonRegion	0	66.42	95.79	116.10	88.39	68.02	28.75	67.02
80	E36a_E37a	KnownJunction	0	82.16	91.29	128.83	87.69	58.42	39.93	51.11
81	ER37a	ExonRegion	0	73.96	98.68	118.10	83.66	57.21	35.19	64.78
82	E37a_E38a	KnownJunction	0	70.63	88.43	120.05	94.36	81.05	32.08	73.96
83	ER38a	ExonRegion	0	88.77	119.48	137.49	144.80	87.37	54.32	85.24
84	E38a_E39a	KnownJunction	0	109.35	146.80	162.17	167.10	91.66	66.30	96.16
85	ER39a	ExonRegion	0	65.60	108.37	113.92	131.73	76.53	62.79	74.55
86	E39a_E40a	KnownJunction	0	84.02	84.44	150.17	138.60	96.38	99.29	103.46
87	E39a_E41a	NovelJunction	0	2.65	9.48	4.25	9.56	0.00	5.60	6.39
88	ER40a	ExonRegion	0	95.02	105.43	166.92	152.74	112.31	87.11	108.32
89	E40a_E41a	KnownJunction	0	118.50	113.97	218.46	152.50	132.02	85.46	124.25
90	ER41a	ExonRegion	0	67.87	93.78	117.55	125.66	65.69	60.91	79.65
91	E41a_E42a	KnownJunction	0	92.90	79.68	118.76	127.08	40.53	58.77	74.11
92	ER42a	ExonRegion	0	55.55	73.24	84.16	90.15	65.03	47.48	63.93
93	E42a_E43a	KnownJunction	0	118.11	97.81	140.66	124.16	73.70	65.36	111.58
94	ER43a	ExonRegion	0	86.55	115.97	137.41	143.79	73.63	89.26	111.25
95	E43a_E44a	KnownJunction	0	49.60	118.88	113.78	169.48	52.81	88.01	88.60
96	ER44a	ExonRegion	0	79.87	115.46	138.32	161.72	103.39	73.59	103.95
97	E44a_E45a	KnownJunction	0	80.96	103.64	163.49	169.48	86.22	55.56	117.29
98	E44a_E46a	NovelJunction	0	0.00	9.41	3.78	5.91	0.00	1.34	0.00
99	ER45a	ExonRegion	0	83.80	118.43	140.19	150.51	89.99	74.62	109.17
100	E45a_E46a	KnownJunction	0	69.05	94.08	118.10	145.78	100.00	69.25	89.64
101	ER46a	ExonRegion	0	109.68	120.21	170.06	179.68	102.84	83.52	125.99
102	E46a_E47a	KnownJunction	0	146.85	127.99	218.16	193.48	130.89	104.68	159.82
103	ER47a	ExonRegion	0	121.55	121.91	176.28	180.58	103.15	82.69	131.33
104	E47a_E48a	KnownJunction	0	100.51	86.14	130.90	137.49	92.76	61.26	78.49
105	E48_Aa	NovelBoundary	1	31.06	1.52	31.47	5.50	0.00	0.00	2.79
106	ER48a	ExonRegion	0	97.46	116.02	134.03	157.69	122.74	69.07	107.20
107	E48a_E49a	KnownJunction	0	112.47	140.60	206.47	185.87	157.31	96.37	138.94
108	ER49a	ExonRegion	0	119.79	141.62	211.71	217.67	199.93	115.65	136.62
109	E49a_E50a	KnownJunction	0	176.31	162.91	280.85	216.67	177.41	108.91	162.12
110	ER50a	ExonRegion	0	145.09	169.38	217.85	219.58	183.11	123.62	135.45
111	E50a_E51a	KnownJunction	0	122.10	141.89	204.36	200.01	140.07	94.60	109.08
112	E51_Aa	NovelBoundary	1	3.02	3.86	3.89	5.69	7.58	1.66	17.41
113	ER51a	ExonRegion	0	133.79	160.31	198.12	204.74	212.26	120.22	147.18
114	E51a_E52a	KnownJunction	0	143.32	154.42	198.81	158.65	220.66	100.12	131.86
115	ER52a	ExonRegion	0	147.23	173.94	219.77	200.71	221.66	91.04	160.22
116	E52a_E53a	KnownJunction	0	126.04	177.28	195.59	235.75	176.17	94.87	150.98
117	E53_Aa	NovelBoundary	1	49.22	0.00	62.45	1.11	0.00	0.00	1.50
118	ER53a	ExonRegion	0	175.38	183.25	256.34	227.82	227.24	101.54	186.94
119	E53a_E54a	KnownJunction	0	214.33	194.43	298.79	274.03	242.93	104.73	188.74
120	ER54a	ExonRegion	0	56.00	45.57	70.66	67.17	55.52	40.41	43.12