Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PRPF40B	Gene	0	21.91	34.74	35.19	42.47	35.54	12.79	23.88
2	261897	Transcript	0	0.09	0.08	0.41	0.78	0.26	0.68	0.83
3	380281	Transcript	0	0	0	0	0	0	0	0
4	341308	Transcript	0	0	0	0	0	0	0	0
5	395012	Transcript	0	6.45	12.79	13.69	11.58	12.36	3.55	9.08
6	ER1a	ExonRegion	0	0.18	0.17	0.81	1.55	0.52	1.35	1.66
7	E1_Da	NovelBoundary	0	0.00	2.71	2.31	2.52	0.00	12.62	4.27
8	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	I1_AR1	ActiveIntronRegion	1	2.56	2.62	5.92	1.66	3.81	4.45	8.78
10	ER2a	ExonRegion	0	0.00	0.16	0.52	2.72	0.28	1.14	1.37
11	E2a_E3a	KnownJunction	0	0.00	1.10	1.18	2.82	3.16	0.00	3.47
12	ER3a	ExonRegion	0	5.14	15.51	9.68	20.72	11.57	7.04	8.17
13	E3a_E4a	KnownJunction	0	13.60	36.28	18.26	30.53	24.53	7.10	20.90
14	E4_Aa	NovelBoundary	1	0.88	0.00	1.72	3.77	1.18	10.13	4.08
15	ER4a	ExonRegion	0	15.68	30.81	17.03	30.66	31.33	6.63	18.35
16	E4a_E5a	KnownJunction	0	15.22	18.23	16.35	25.66	22.48	4.37	10.19
17	E5a_E6a	KnownJunction	1	1.87	17.31	14.80	11.22	6.45	1.53	10.72
18	ER5a	ExonRegion	1	9.08	30.72	9.85	31.80	15.91	4.64	12.55
19	E6a_E7a	KnownJunction	0	14.40	39.22	19.82	40.04	11.37	13.53	11.91
20	ER6a	ExonRegion	0	8.90	39.25	11.96	32.95	9.06	7.17	12.79
21	ER7a	ExonRegion	0	19.86	57.08	35.88	46.95	40.73	13.99	27.68
22	E7a_E8a	KnownJunction	0	35.05	57.80	58.11	59.68	39.12	19.38	29.67
23	ER8a	ExonRegion	0	25.97	59.63	52.34	58.81	36.45	18.77	30.84
24	E8a_E9a	KnownJunction	0	12.73	42.22	28.51	35.92	29.48	10.13	19.06
25	E9a_E10a	KnownJunction	1	3.57	21.54	18.29	44.13	14.78	16.99	7.47
26	ER9a	ExonRegion	0	10.64	39.36	30.29	47.78	28.31	19.13	17.65
27	I9	Intron	0	0.61	9.87	1.99	6.76	0.55	2.48	2.72
28	I9_AR1	ActiveIntronRegion	0	0.80	11.72	2.01	8.59	0.35	3.00	4.06
29	I9_AR2	ActiveIntronRegion	0	0.77	13.28	2.94	7.48	0.81	2.53	1.62
30	E10_Aa	NovelBoundary	0	1.60	10.88	1.35	10.89	0.00	4.10	2.25
31	ER10a	ExonRegion	0	22.84	54.01	37.65	56.25	36.72	19.29	22.43
32	E10a_E11a	KnownJunction	0	33.51	69.30	57.80	67.10	49.38	15.57	24.22
33	ER11a	ExonRegion	0	35.18	72.03	59.18	73.90	62.95	23.25	31.84
34	E11a_E12a	KnownJunction	0	36.02	71.30	70.07	84.90	69.57	20.77	32.92
35	ER12a	ExonRegion	0	37.12	65.86	68.64	80.53	64.43	21.01	39.72
36	E12a_E13a	KnownJunction	0	36.98	51.96	63.83	73.04	64.66	19.30	41.13
37	E12a_E14a	NovelJunction	0	0.83	2.60	4.21	13.55	0.00	5.07	2.38
38	ER13a	ExonRegion	0	34.91	51.80	52.61	74.83	60.26	13.82	37.42
39	E13a_E14a	KnownJunction	0	16.96	46.08	48.16	56.38	35.02	10.16	22.41
40	ER14a	ExonRegion	0	44.68	65.37	65.59	88.27	74.39	16.52	42.53
41	E14a_E15a	KnownJunction	1	61.20	82.12	84.04	113.65	93.89	13.64	54.55
42	ER15a	ExonRegion	1	46.10	77.79	78.91	93.10	83.53	12.32	57.24
43	E15a_E16a	KnownJunction	1	51.32	62.71	68.69	73.53	89.61	6.83	56.27
44	I15	Intron	0	0.16	0.64	1.28	3.93	0.79	8.37	2.12
45	I15_AR1	ActiveIntronRegion	1	0.00	0.72	2.16	5.26	1.65	18.72	2.71
46	E16_Aa	NovelBoundary	1	0.82	0.00	5.32	13.30	2.05	89.78	12.51
47	ER16a	ExonRegion	0	51.43	69.63	78.12	92.80	88.30	52.25	57.00
48	E16_Da	NovelBoundary	1	1.03	1.10	10.02	31.62	7.38	105.99	17.00
49	E16a_E17a	KnownJunction	0	37.84	41.82	71.71	73.71	82.51	14.79	54.13
50	I16	Intron	1	1.11	1.25	5.14	19.26	8.00	73.37	11.07
51	I16_AR1	ActiveIntronRegion	1	1.14	1.31	5.56	19.67	7.57	76.14	11.11
52	I16_SR1	SilentIntronRegion	1	0.99	0.86	2.44	17.53	11.63	58.00	11.48
53	E17_Aa	NovelBoundary	1	0.00	2.57	2.05	10.78	5.05	32.11	15.89
54	E17_Ab	NovelBoundary	1	32.53	29.37	57.94	64.56	46.22	63.84	53.57
55	ER17a	ExonRegion	0	39.15	43.01	72.41	76.25	75.07	32.12	58.08
56	ER17b	ExonRegion	0	43.48	44.23	60.89	64.93	77.88	45.79	55.27
57	E17_Da	NovelBoundary	0	1.30	5.70	2.77	9.59	2.01	16.11	2.08
58	E17a_E18a	KnownJunction	0	32.65	29.27	46.99	36.46	52.40	4.40	34.32
59	E17_Db	NovelBoundary	1	0.00	7.25	0.70	23.05	8.14	17.93	3.43
60	E17b_E18a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
61	ER17c	ExonRegion	0	1.54	0.00	3.39	4.99	5.67	1.23	2.02
62	I17	Intron	0	1.84	2.50	3.79	7.09	8.00	8.19	3.74
63	I17_AR1	ActiveIntronRegion	0	1.87	2.52	3.84	7.19	8.11	8.30	3.79
64	E18_Aa	NovelBoundary	1	4.59	1.63	0.50	14.06	1.78	12.86	1.48
65	ER18a	ExonRegion	0	38.20	47.05	60.80	68.47	73.75	19.10	48.34
66	E18_Da	NovelBoundary	1	0.00	0.00	5.86	11.89	9.41	29.53	11.21
67	E18a_E19a	KnownJunction	0	43.18	58.30	50.09	70.71	77.67	17.02	53.20
68	E18a_E19b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
69	I18	Intron	1	0.99	0.80	3.83	12.22	7.46	33.60	16.77
70	I18_SR1	SilentIntronRegion	1	1.00	0.81	3.90	12.40	7.59	34.11	17.05
71	E19_Aa	NovelBoundary	1	2.07	5.94	4.60	27.55	21.44	72.71	23.25
72	E19_Ab	NovelBoundary	1	33.21	44.53	48.97	73.88	82.69	53.28	60.08
73	ER19a	ExonRegion	0	40.73	50.91	47.97	60.08	76.13	13.71	48.82
74	ER19b	ExonRegion	0	29.48	38.63	39.98	54.09	58.85	11.10	38.95
75	E19_Da	NovelBoundary	1	2.44	4.54	8.32	31.99	26.28	44.68	15.65
76	E19a_E20a	KnownJunction	0	31.48	64.47	48.74	71.90	76.90	15.44	32.10
77	E20_Aa	NovelBoundary	1	2.00	7.30	12.99	48.06	14.96	65.71	19.38
78	ER20a	ExonRegion	0	25.16	39.29	42.56	47.67	51.38	15.23	29.01
79	E20_Da	NovelBoundary	1	1.65	19.91	3.42	60.41	19.73	62.26	15.23
80	E20a_E21a	KnownJunction	0	43.61	42.93	55.33	39.44	79.00	23.42	39.61
81	E21_Aa	NovelBoundary	1	15.47	35.65	21.40	61.23	28.75	75.25	20.18
82	ER21a	ExonRegion	0	34.16	40.52	60.01	44.42	38.53	23.93	35.77
83	E21_Da	NovelBoundary	1	2.55	5.36	7.86	26.41	17.80	49.79	13.61
84	E21a_E22a	KnownJunction	0	18.03	10.98	22.02	24.22	23.56	3.73	11.77
85	E21a_E22b	KnownJunction	0	17.81	38.38	37.68	29.75	31.42	9.43	25.21
86	E22_Aa	NovelBoundary	1	1.02	2.23	12.33	30.69	16.64	75.92	25.04
87	E22_Ab	NovelBoundary	1	7.21	0.00	18.48	17.91	8.74	36.55	9.92
88	ER22a	ExonRegion	0	19.79	22.17	25.74	31.80	29.36	6.13	15.35
89	ER22b	ExonRegion	0	41.05	53.41	65.01	53.78	49.50	21.50	31.93
90	E22_Da	NovelBoundary	1	3.34	1.21	21.27	65.37	32.71	96.69	27.40
91	E22a_E23a	KnownJunction	0	70.68	75.77	111.15	104.33	79.72	22.59	50.92
92	E23_Aa	NovelBoundary	1	2.04	4.68	13.75	25.06	20.19	56.95	18.53
93	ER23a	ExonRegion	0	35.19	41.15	52.82	59.14	35.84	9.48	24.26
94	E23_Da	NovelBoundary	1	1.72	0.00	10.19	44.67	8.28	79.19	13.79
95	E23a_E24a	KnownJunction	1	34.00	33.10	46.60	65.07	54.08	8.63	20.59
96	E24_Aa	NovelBoundary	1	0.98	6.02	23.24	38.36	21.65	94.60	19.39
97	ER24a	ExonRegion	0	33.08	45.67	61.78	61.08	50.00	8.82	30.42
98	E24_Da	NovelBoundary	1	1.95	5.60	13.39	25.60	12.06	66.06	13.26
99	E24a_E25a	KnownJunction	0	41.44	41.14	71.36	57.00	65.01	10.83	44.93
100	E25_Aa	NovelBoundary	1	0.63	5.67	15.13	33.62	23.35	60.86	13.53
101	ER25a	ExonRegion	0	21.44	30.91	31.55	46.10	16.92	10.47	20.70
102	E25_Da	NovelBoundary	1	0.00	5.94	9.21	27.88	8.39	53.92	15.18
103	E25a_E26a	KnownJunction	0	39.59	49.94	55.71	50.90	29.76	14.87	35.40
104	E26_Aa	NovelBoundary	1	0.85	9.43	6.94	30.50	20.52	54.03	18.77
105	ER26a	ExonRegion	0	35.21	47.60	54.39	54.17	38.72	13.85	31.61
106	ER26b	ExonRegion	0	9.01	9.89	13.80	11.68	15.34	3.04	10.96
107	ER26c	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
108	ER26d	ExonRegion	0	0.00	0.36	0.00	0.00	0.00	0.00	0.00