Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	LRRC23	Gene	0	20.37	29.47	8.08	10.26	9.64	20.74	16.30
2	7969	Transcript	0	13.52	17.20	5.94	3.33	4.13	10.00	8.55
3	323702	Transcript	0	1.74	0.00	0.75	0.00	2.33	1.66	3.31
4	382257	Transcript	0	0.00	0.00	0.00	0.00	0.00	4.58	0.73
5	IG35	Intergenic	0	17.45	9.33	6.01	16.28	5.92	56.75	8.67
6	IG35_AR1	ActiveIntergenicRegion	0	37.10	15.31	15.27	21.18	21.95	63.90	22.62
7	IG35_SR1	SilentIntergenicRegion	0	13.57	6.64	4.76	11.24	4.22	44.17	7.03
8	IG35_AR2	ActiveIntergenicRegion	0	4.38	3.16	3.25	5.24	2.51	11.77	4.18
9	IG35_AR3	ActiveIntergenicRegion	0	30.15	22.39	13.85	38.62	9.18	109.06	18.00
10	IG35_SR2	SilentIntergenicRegion	0	11.26	7.67	3.32	13.77	3.67	40.40	7.55
11	IG35_AR4	ActiveIntergenicRegion	0	19.77	11.07	7.41	19.13	7.09	71.04	12.54
12	IG35_SR3	SilentIntergenicRegion	0	13.19	6.30	3.13	12.69	1.81	55.16	3.12
13	IG35_AR5	ActiveIntergenicRegion	0	5.20	3.88	0.92	9.11	0.32	32.42	0.78
14	ER1a	ExonRegion	0	0.77	0.00	0.00	0.00	0.00	0.00	0.00
15	ER1b	ExonRegion	0	8.76	4.68	3.43	5.35	5.17	8.35	7.62
16	E1_Da	NovelBoundary	1	1.64	0.00	0.00	5.36	0.00	16.67	0.89
17	E1a_E2a	KnownJunction	0	11.62	5.81	6.27	4.25	11.92	4.45	16.68
18	I1	Intron	0	4.99	8.40	2.42	7.20	0.24	12.82	0.67
19	I1_AR1	ActiveIntronRegion	0	7.00	11.81	2.63	6.87	0.47	15.18	0.99
20	I1_SR1	SilentIntronRegion	0	2.94	4.93	2.23	7.63	0.00	10.52	0.36
21	E2_Aa	NovelBoundary	0	9.06	9.51	6.90	2.76	0.00	14.90	0.73
22	ER2a	ExonRegion	0	22.96	28.52	8.67	12.75	8.64	23.30	17.05
23	E2a_E3a	KnownJunction	1	23.72	33.05	8.98	5.26	11.37	4.48	11.45
24	E2a_E4a	NovelJunction	0	16.92	19.39	5.56	8.24	10.03	28.19	29.58
25	E3_Aa	NovelBoundary	1	5.74	5.96	0.88	7.34	0.00	24.20	0.00
26	ER3a	ExonRegion	0	17.79	21.17	9.91	10.97	12.06	17.69	11.67
27	E3_Da	NovelBoundary	1	4.97	8.83	5.62	8.94	0.00	28.35	0.00
28	E3a_E4a	KnownJunction	0	15.32	21.75	4.33	5.12	6.55	10.69	10.20
29	I3	Intron	1	3.59	2.77	2.19	6.63	0.31	14.45	0.39
30	I3_SR1	SilentIntronRegion	1	3.60	2.78	2.20	6.66	0.31	14.51	0.39
31	E4_Aa	NovelBoundary	0	6.46	9.38	4.38	7.86	0.00	10.45	0.00
32	ER4a	ExonRegion	0	33.94	60.37	14.84	22.84	19.11	45.96	37.67
33	E4_Da	NovelBoundary	0	4.57	15.32	5.19	7.50	0.00	18.09	0.75
34	E4a_E5a	KnownJunction	0	31.56	65.26	14.08	12.76	18.93	23.61	35.34
35	E4a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	4.58	0.73
36	I4	Intron	1	4.10	3.32	1.55	4.27	0.37	17.94	0.46
37	I4_AR1	ActiveIntronRegion	1	4.50	1.91	0.56	4.92	0.45	17.62	0.00
38	I4_SR1	SilentIntronRegion	1	3.98	3.89	1.95	4.04	0.35	18.18	0.65
39	E5_Aa	NovelBoundary	1	3.04	6.99	2.63	5.04	0.00	22.99	0.00
40	ER5a	ExonRegion	0	30.74	53.44	14.59	12.35	16.64	30.89	32.26
41	E5_Da	NovelBoundary	0	19.13	32.42	6.97	11.70	1.04	36.07	9.11
42	E5a_E6a	KnownJunction	0	13.19	14.71	7.24	1.68	11.20	8.82	18.09
43	I5	Intron	1	19.93	11.25	6.25	7.17	1.04	16.95	1.76
44	I5_AR1	ActiveIntronRegion	1	37.27	17.85	12.75	12.49	2.28	33.23	3.80
45	I5_AR2	ActiveIntronRegion	1	13.19	17.21	6.10	6.23	0.81	38.01	2.70
46	I5_AR3	ActiveIntronRegion	1	10.25	13.36	5.31	4.99	0.81	30.85	1.46
47	I5_AR4	ActiveIntronRegion	1	6.47	6.99	2.82	2.60	0.81	19.62	0.39
48	I5_AR5	ActiveIntronRegion	1	2.56	4.66	1.35	0.42	0.81	11.65	0.00
49	I5_SR1	SilentIntronRegion	0	13.71	8.50	3.71	5.24	0.54	9.06	0.94
50	E6_Aa	NovelBoundary	1	20.41	11.01	3.92	12.43	0.95	30.90	3.61
51	ER6a	ExonRegion	0	20.39	17.06	8.33	6.56	9.91	17.23	14.59
52	E6_Da	NovelBoundary	1	23.83	8.35	7.42	12.43	0.00	28.81	5.99
53	E6a_E7a	KnownJunction	1	7.64	5.83	5.45	0.00	5.16	12.25	9.67
54	E6a_E8a	KnownJunction	0	1.74	0.00	0.75	0.00	2.33	1.66	3.31
55	I6	Intron	1	22.14	7.87	4.57	4.93	2.14	8.34	1.06
56	I6_AR1	ActiveIntronRegion	0	14.43	4.82	2.43	5.98	1.71	9.25	1.62
57	I6_AR4	ActiveIntronRegion	1	35.70	9.47	7.89	6.49	2.74	11.47	1.46
58	I6_SR2	SilentIntronRegion	0	14.00	7.52	2.65	3.46	1.81	5.73	0.60
59	E7_Aa	NovelBoundary	1	10.45	9.30	2.79	4.74	2.17	7.75	0.80
60	ER7a	ExonRegion	0	13.63	21.77	4.96	4.88	5.46	12.63	8.62
61	E7a_E8a	KnownJunction	1	19.29	24.01	7.40	5.12	1.78	5.12	7.35
62	ER8a	ExonRegion	0	16.36	21.60	4.15	6.82	5.07	11.14	6.30
63	ER8b	ExonRegion	0	0.70	0.30	0.00	0.42	0.00	1.33	0.00