Order SeqName SeqType IsAE Lum_Epi Lum_Epi2 Myo_Epi Myo_Epi2 hESCs StemLike vHMECs 1 ST3GAL4 Gene 0 71.07 58.01 5.51 4.84 36.86 107.17 56.64 2 239597 Transcript 0 2.26 0.79 0.06 0.05 1.08 2.19 2.06 3 356132 Transcript 0 6.97 5.92 0.07 0.23 0.83 13.33 3.66 4 227495 Transcript 0 0 0 0 0 0 0 0 5 392669 Transcript 0 2.25 4.44 0.89 2.12 1.78 18.12 1.78 6 IG42 Intergenic 0 6.55 2.23 3.77 1.45 11.53 1.90 6.89 7 IG42_SR1 SilentIntergenicRegion 0 7.21 3.06 4.02 2.81 9.36 1.59 9.24 8 IG42_AR1 ActiveIntergenicRegion 0 13.76 3.64 8.87 1.25 20.98 0.00 15.58 9 IG42_SR2 SilentIntergenicRegion 0 9.09 3.24 5.39 1.40 13.07 1.06 9.89 10 IG42_AR2 ActiveIntergenicRegion 0 9.58 4.27 5.86 2.71 18.71 2.74 15.42 11 IG42_SR3 SilentIntergenicRegion 0 15.13 4.75 9.99 3.50 32.06 3.12 7.28 12 IG42_AR3 ActiveIntergenicRegion 0 13.45 3.46 8.11 2.34 13.25 1.82 8.96 13 IG42_SR6 SilentIntergenicRegion 0 3.06 0.18 1.17 0.74 8.83 1.45 1.99 14 IG42_AR8 ActiveIntergenicRegion 0 3.29 0.00 0.48 0.33 6.40 1.71 7.53 15 ER1a ExonRegion 0 0.00 1.08 0.00 0.00 0.00 0.82 0.67 16 ER1b ExonRegion 0 7.82 13.19 0.07 1.58 9.10 17.61 6.86 17 E1a_E3a KnownJunction 0 4.11 19.55 0.66 1.68 3.00 23.02 9.93 18 ER2a ExonRegion 0 0.66 3.75 0.80 1.70 1.07 18.53 1.10 19 E2a_E3a KnownJunction 1 0.72 6.38 1.54 1.19 1.18 30.52 2.25 20 ER3a ExonRegion 0 47.27 63.01 3.05 3.36 15.81 94.77 38.03 21 E3a_E4a KnownJunction 0 59.62 68.38 4.83 5.88 24.41 145.95 58.76 22 ER4a ExonRegion 0 65.57 82.46 6.44 8.64 42.37 157.90 64.38 23 E4_Da NovelBoundary 0 35.92 35.94 2.47 2.14 34.07 76.86 30.41 24 E4a_E5a KnownJunction 0 13.90 7.57 1.41 1.65 6.04 25.86 3.38 25 E4b_E5a KnownJunction 0 62.34 80.00 5.91 4.66 39.03 120.57 55.51 26 ER4b ExonRegion 0 59.43 76.03 6.77 5.72 45.22 121.78 58.86 27 ER5a ExonRegion 0 94.57 104.06 6.89 7.22 27.54 192.84 76.46 28 E5a_E6a KnownJunction 0 4.84 2.63 0.00 0.00 0.00 8.20 1.32 29 E5a_E6b KnownJunction 0 103.93 120.45 3.22 10.81 32.07 191.99 91.58 30 ER6a ExonRegion 0 9.10 9.21 0.14 0.46 1.66 18.45 6.00 31 ER6b ExonRegion 0 84.43 117.30 6.86 6.95 53.34 219.26 99.15 32 E6a_E7a KnownJunction 0 121.55 124.45 13.80 12.30 72.78 271.13 130.90 33 E6a_E8a NovelJunction 1 0.00 0.00 0.00 0.00 0.00 11.18 0.00 34 ER7a ExonRegion 0 134.38 112.11 10.53 9.44 61.72 226.39 137.41 35 E7a_E8a KnownJunction 0 103.93 93.87 4.40 4.96 52.58 152.38 105.57 36 E7a_E9a KnownJunction 0 7.51 1.47 0.00 0.00 1.15 1.66 3.38 37 ER8a ExonRegion 0 91.04 96.82 2.70 4.42 71.09 183.34 103.40 38 E8a_E9a KnownJunction 0 134.40 103.56 6.80 2.65 114.18 198.67 132.38 39 ER9a ExonRegion 0 200.27 141.02 14.56 7.67 109.11 260.13 167.68 40 E9a_E10a KnownJunction 0 257.08 167.95 19.13 13.98 128.36 242.03 182.47 41 ER10a ExonRegion 0 174.31 127.08 15.20 11.88 94.98 232.87 131.32 42 E10a_E11a KnownJunction 0 154.47 66.10 10.42 3.36 81.19 129.71 103.56 43 E10a_E13a KnownJunction 0 0.75 0.00 0.00 0.00 2.35 4.61 2.92 44 ER11a ExonRegion 0 123.73 66.02 9.38 6.30 71.56 140.94 92.96 45 E11a_E12a KnownJunction 0 80.75 55.83 9.56 4.42 45.99 148.74 75.50 46 ER12a ExonRegion 0 67.87 50.30 5.64 5.57 27.91 88.00 40.34 47 ER12b ExonRegion 0 5.38 3.17 0.34 3.46 3.10 5.31 1.99 48 ER13a ExonRegion 0 0.76 0.60 0.23 0.21 0.81 1.67 1.24