Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CEP57	Gene	0	74.23	47.17	74.64	47.06	258.81	42.76	94.13
2	325486	Transcript	0	4.21	17.79	2.95	12.11	48.34	16.16	2.85
3	325542	Transcript	0	79.99	41.52	66.51	45.83	401.91	36.44	121.78
4	IG35	Intergenic	0	9.60	4.27	5.93	5.50	4.00	3.88	0.35
5	IG35_AR2	ActiveIntergenicRegion	0	11.91	3.86	7.61	6.42	4.85	4.49	0.17
6	ER1a	ExonRegion	0	21.67	26.73	17.27	25.91	63.33	18.27	37.13
7	E1a_E2a	KnownJunction	0	21.86	24.70	25.23	49.63	90.55	26.50	59.36
8	ER2a	ExonRegion	0	42.72	57.30	47.90	66.62	228.78	48.66	92.38
9	E2a_E3a	KnownJunction	0	62.64	83.36	76.58	61.61	240.00	50.79	94.23
10	ER3a	ExonRegion	0	136.61	89.67	116.77	70.44	476.93	68.04	148.03
11	E3a_E4a	KnownJunction	0	218.22	111.00	166.31	64.88	899.84	70.83	206.24
12	ER4a	ExonRegion	0	231.54	107.88	171.98	91.18	613.71	74.42	207.50
13	E4a_E5a	KnownJunction	0	193.44	77.61	144.57	86.34	574.22	59.92	205.53
14	E4a_E6a	NovelJunction	0	4.11	10.72	3.22	4.71	5.07	5.36	1.18
15	ER5a	ExonRegion	0	158.30	63.04	127.26	60.82	657.81	49.21	191.31
16	E5a_E6a	KnownJunction	0	112.82	45.19	80.13	44.46	361.05	21.17	112.13
17	ER6a	ExonRegion	0	109.18	56.43	81.91	51.59	375.63	42.82	124.94
18	E6a_E7a	KnownJunction	0	84.57	54.12	88.79	60.22	383.97	47.94	122.46
19	I6_AR4	ActiveIntronRegion	0	4.95	5.08	6.41	12.39	7.32	13.22	4.01
20	E7_Aa	NovelBoundary	1	10.63	5.07	18.32	18.80	10.05	13.78	6.15
21	ER7a	ExonRegion	0	115.73	62.22	92.62	74.70	432.69	53.08	138.09
22	E7_Da	NovelBoundary	1	76.56	23.09	62.48	51.28	99.17	33.39	15.69
23	E7a_E8a	KnownJunction	0	109.39	46.87	74.98	52.83	493.63	34.01	123.39
24	E7a_E9a	KnownJunction	0	4.21	17.79	2.95	12.11	48.34	16.16	2.85
25	I7	Intron	0	17.43	12.17	15.57	13.08	32.35	15.57	12.03
26	I7_AR1	ActiveIntronRegion	0	17.54	12.24	15.67	13.16	32.51	15.67	12.10
27	E8_Aa	NovelBoundary	1	17.51	8.80	21.99	22.11	25.31	12.01	13.72
28	ER8a	ExonRegion	0	82.51	41.41	75.62	44.99	396.81	40.91	129.63
29	E8_Da	NovelBoundary	1	19.03	7.17	24.16	21.97	25.22	13.08	14.69
30	E8a_E9a	KnownJunction	0	48.07	36.28	48.93	39.66	315.29	34.38	112.30
31	I8	Intron	0	33.45	12.51	33.90	18.98	31.22	20.05	14.59
32	I8_AR1	ActiveIntronRegion	0	38.13	14.93	36.41	24.08	39.88	23.41	19.76
33	I8_AR2	ActiveIntronRegion	0	29.64	10.52	31.88	14.77	24.07	17.29	10.32
34	E9_Aa	NovelBoundary	0	16.34	18.10	21.54	26.66	31.91	17.31	17.41
35	ER9a	ExonRegion	0	94.56	77.10	96.48	92.38	420.66	69.39	148.00
36	E9_Da	NovelBoundary	1	16.86	13.29	13.21	25.55	12.45	10.56	7.61
37	E9a_E10a	KnownJunction	0	76.94	53.91	66.74	68.32	520.81	61.56	134.41
38	I9	Intron	0	9.40	6.59	14.23	9.58	5.04	9.24	4.11
39	I9_SR1	SilentIntronRegion	0	9.43	6.61	14.28	9.61	5.05	9.27	4.13
40	E10_Aa	NovelBoundary	0	9.78	12.19	14.47	7.80	8.94	18.95	1.46
41	ER10a	ExonRegion	0	71.75	67.51	81.00	68.61	350.16	63.42	126.30
42	E10_Da	NovelBoundary	1	8.81	5.12	11.57	6.99	3.07	16.16	8.80
43	E10a_E11a	KnownJunction	0	52.02	55.49	63.59	54.32	245.74	40.71	96.21
44	I10_AR1	ActiveIntronRegion	0	8.27	4.62	15.99	6.97	1.56	5.87	3.79
45	ER11a	ExonRegion	0	53.96	32.06	65.66	31.50	160.56	34.36	65.84
46	IG36	Intergenic	0	6.68	8.60	14.93	13.83	12.30	11.65	4.82
47	IG36_SR1	SilentIntergenicRegion	0	8.38	9.09	17.03	14.88	13.36	13.26	5.29
48	IG36_SR2	SilentIntergenicRegion	0	3.75	7.61	11.32	12.22	10.73	8.56	4.08