Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	TAF1D	Gene	0	444.46	787.14	612.36	640.92	332.53	719.15	243.51
2	323981	Transcript	0	148.51	275.43	191.16	257.21	166.18	254.71	89.10
3	393259	Transcript	0	200.47	508.10	365.61	454.46	238.43	544.86	189.44
4	IG15	Intergenic	0	1.73	3.46	1.80	10.73	0.94	5.61	0.00
5	IG15_AR2	ActiveIntergenicRegion	0	0.48	2.20	0.59	8.22	0.76	3.06	0.00
6	IG15_SR1	SilentIntergenicRegion	0	2.88	5.75	2.58	17.32	1.78	8.30	0.00
7	ER1a	ExonRegion	0	44.26	111.28	67.71	90.18	93.13	53.80	55.80
8	ER1b	ExonRegion	0	83.02	464.89	128.14	330.77	149.38	293.97	101.03
9	E1a_E2a	KnownJunction	0	172.61	915.38	262.19	626.92	50.00	633.89	208.46
10	ER2a	ExonRegion	0	469.84	1155.43	793.44	868.61	295.00	894.31	424.26
11	E2a_E3a	KnownJunction	0	306.13	1107.13	696.44	832.97	633.15	929.50	405.81
12	ER3a	ExonRegion	0	557.64	1239.78	867.63	917.56	299.97	1087.16	294.85
13	E3a_E4a	KnownJunction	1	1314.05	1096.83	1471.82	981.21	689.30	1146.79	329.48
14	ER4a	ExonRegion	0	1162.91	1409.39	1372.58	1181.55	649.55	1237.46	385.53
15	E4_Da	NovelBoundary	0	258.11	143.60	387.88	128.49	70.45	58.93	62.79
16	E4a_E5a	KnownJunction	0	691.41	1276.08	778.70	910.13	527.08	1020.86	299.96
17	E4a_E6a	NovelJunction	1	42.08	33.31	25.69	17.39	4.06	53.01	0.89
18	E4a_E7a	NovelJunction	0	28.41	73.85	32.20	93.46	13.97	67.99	21.65
19	I4	Intron	0	168.61	127.64	274.42	90.99	59.02	62.90	50.20
20	I4_AR1	ActiveIntronRegion	0	169.57	128.40	276.00	91.55	59.35	63.26	50.51
21	E5_Aa	NovelBoundary	0	166.55	165.06	295.86	155.99	86.96	103.90	56.37
22	ER5a	ExonRegion	0	862.82	1330.25	1004.85	1025.20	736.32	1104.45	377.93
23	E5a_E6a	KnownJunction	0	937.74	1164.56	1090.95	978.34	762.36	999.23	399.40
24	ER6a	ExonRegion	0	1383.05	1801.06	1501.42	1550.82	971.52	1594.76	513.98
25	E6_Da	NovelBoundary	0	281.08	292.35	464.75	159.86	75.50	191.19	118.46
26	E6a_E7a	KnownJunction	0	1096.15	1628.78	1105.68	1541.02	669.27	1658.24	412.95
27	E6a_E8b	NovelJunction	0	8.11	27.64	19.01	21.24	8.83	44.17	4.70
28	I6	Intron	0	68.69	35.63	122.24	37.63	102.60	26.03	30.07
29	I6_AR1	ActiveIntronRegion	0	69.41	36.00	123.49	38.02	103.58	26.30	30.38
30	E7_Aa	NovelBoundary	0	194.49	91.45	318.72	80.38	173.08	79.68	63.60
31	ER7a	ExonRegion	0	983.11	1699.21	1032.60	1564.14	680.19	1658.71	396.10
32	E7_Da	NovelBoundary	0	163.16	30.79	214.45	28.74	146.96	12.17	57.94
33	E7a_E8a	KnownJunction	0	1.92	8.62	0.00	4.09	3.11	13.91	0.76
34	E7a_E8b	KnownJunction	0	615.01	1068.80	657.95	1015.18	665.21	993.28	272.28
35	E7a_E12b	NovelJunction	0	4.01	12.51	0.79	15.88	3.09	24.84	9.26
36	I7	Intron	0	79.15	43.90	166.26	37.90	91.94	32.58	53.21
37	I7_AR1	ActiveIntronRegion	0	79.24	43.95	166.46	37.94	92.05	32.61	53.27
38	E8_Aa	NovelBoundary	0	84.15	82.97	184.95	63.20	159.96	78.15	66.63
39	ER8a	ExonRegion	0	157.33	115.85	256.11	105.18	140.42	137.08	113.29
40	E8_Ab	KnownBoundary	0	268.29	188.89	431.07	141.55	355.38	172.86	186.80
41	ER8b	ExonRegion	0	881.14	1366.30	1040.03	1220.40	1019.09	1294.71	499.51
42	E8_Da	NovelBoundary	1	128.36	85.72	202.39	70.79	29.83	90.85	29.35
43	E8a_E9a	KnownJunction	0	510.61	801.49	631.50	718.65	883.59	772.53	338.15
44	I8	Intron	0	96.80	61.40	183.40	53.96	28.68	67.26	26.48
45	I8_AR1	ActiveIntronRegion	0	97.57	61.88	184.91	54.42	28.89	67.79	26.70
46	E9_Aa	NovelBoundary	1	90.83	57.80	201.69	61.09	31.21	52.10	23.47
47	ER9a	ExonRegion	0	874.26	1386.57	1052.52	1175.17	1067.55	1289.43	548.46
48	E9_Da	NovelBoundary	0	119.10	84.75	239.42	42.56	94.56	61.69	64.02
49	E9a_E10a	KnownJunction	0	800.92	1230.16	936.66	989.80	1347.21	1133.98	461.67
50	I9	Intron	0	247.09	143.73	314.30	131.58	110.48	99.56	90.13
51	I9_AR1	ActiveIntronRegion	0	247.87	144.20	315.30	132.01	110.82	99.89	90.43
52	E10_Aa	NovelBoundary	0	297.92	307.82	485.90	164.12	214.23	205.34	243.48
53	ER10a	ExonRegion	0	768.15	1352.79	1046.08	1062.96	1090.38	1283.98	492.33
54	E10a_E11a	KnownJunction	0	436.96	893.28	706.55	742.87	577.64	874.45	334.87
55	ER11a	ExonRegion	0	562.99	1198.03	906.30	982.26	576.46	1254.69	455.80
56	E11a_E12a	KnownJunction	0	502.62	1148.46	856.86	1003.02	578.23	1242.73	450.88
57	ER12a	ExonRegion	0	493.37	1295.11	928.81	1091.93	471.04	1406.00	482.05
58	E12_Da	KnownBoundary	0	39.57	59.82	108.91	43.26	18.65	54.46	44.24
59	E12a_E12b	KnownJunction	0	316.93	956.70	592.17	831.70	412.42	1046.18	316.80
60	E12a_E12c	NovelJunction	0	11.83	42.51	38.30	49.60	0.90	68.69	6.19
61	ER12b	ExonRegion	0	38.12	74.63	114.24	67.13	28.64	66.32	50.43
62	E12_Ab	KnownBoundary	0	40.97	53.44	77.90	60.47	47.60	71.42	28.86
63	ER12c	ExonRegion	0	445.23	1276.57	870.01	1071.00	431.19	1389.90	416.49
64	E12_Db	KnownBoundary	0	32.36	70.57	84.44	53.69	14.75	67.88	32.39
65	E12b_E12c	KnownJunction	0	325.70	951.24	614.16	876.86	397.75	982.29	326.93
66	ER12d	ExonRegion	0	31.50	79.57	93.49	77.46	13.86	90.91	39.90
67	E12_Ac	KnownBoundary	0	18.56	64.79	68.60	70.76	8.76	106.56	25.28
68	ER12e	ExonRegion	0	269.39	626.14	450.90	577.64	244.81	746.23	255.20
69	E12_Dc	KnownBoundary	0	27.34	48.47	45.51	73.63	47.40	94.04	32.82
70	ER12f	ExonRegion	0	13.67	42.89	22.42	36.07	30.04	69.28	27.07