Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	NCAM1	Gene	0	4.93	28.85	0.26	0.56	13.05	3.37	0.38
2	397957	Transcript	0	0.97	29.59	0.19	0.00	4.05	3.82	0.00
3	401611	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	404693	Transcript	0	0.46	8.17	0.14	0.15	2.35	2.42	0.00
5	397960	Transcript	0	0.36	2.90	0.06	0.00	0.89	0.04	0.00
6	316851	Transcript	0	0.00	9.41	0.00	0.00	1.61	0.00	0.00
7	397963	Transcript	0	0	0	0	0	0	0	0
8	ER1a	ExonRegion	0	2.04	20.08	0.24	0.00	1.89	1.19	0.00
9	E1_Da	NovelBoundary	0	1.75	33.84	0.00	0.00	0.00	9.57	0.00
10	E2a_E3a	KnownJunction	0	1.94	31.71	0.00	0.00	0.00	1.55	0.00
11	E3_Aa	NovelBoundary	0	2.87	12.06	0.00	0.00	0.00	0.00	0.00
12	ER2a	ExonRegion	0	0.00	2.83	0.00	0.00	0.12	0.73	0.00
13	ER3a	ExonRegion	0	0.17	29.50	0.00	0.00	6.25	3.46	0.00
14	E3a_E6b	KnownJunction	0	0.68	63.81	0.70	0.00	11.99	12.17	0.00
15	ER4a	ExonRegion	0	0.11	0.00	0.40	0.36	0.00	0.00	0.00
16	E4a_E6b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	ER5a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	E6_Aa	NovelBoundary	0	0.00	42.32	0.00	45.30	0.00	47.11	0.00
19	ER6a	ExonRegion	0	0.06	2.24	0.00	0.00	0.65	0.28	0.00
20	ER6b	ExonRegion	0	5.40	90.19	0.00	0.00	18.22	10.90	0.00
21	E6a_E7a	KnownJunction	0	5.74	96.68	0.00	0.00	9.04	10.69	0.00
22	ER7a	ExonRegion	0	6.06	100.11	0.00	0.86	12.90	10.27	0.29
23	E7a_E8a	KnownJunction	0	3.37	93.92	0.00	0.00	27.53	3.99	0.70
24	ER8a	ExonRegion	0	5.02	100.98	0.03	0.00	17.46	9.62	0.27
25	E8a_E9a	KnownJunction	0	6.11	113.83	0.00	0.00	18.93	15.44	0.00
26	ER9a	ExonRegion	0	4.63	97.09	0.90	0.07	15.22	6.49	0.37
27	E9a_E10a	KnownJunction	0	6.28	96.81	0.89	1.06	19.87	12.27	0.00
28	ER10a	ExonRegion	0	4.86	80.10	0.67	0.72	17.44	5.25	0.96
29	E10_Da	NovelBoundary	0	0.00	15.21	0.00	0.00	1.18	0.00	0.00
30	E10a_E11a	KnownJunction	0	1.57	82.44	0.00	0.00	11.60	1.39	1.16
31	I10	Intron	0	0.00	7.49	0.00	0.00	0.18	2.87	0.00
32	I10_SR1	SilentIntronRegion	0	0.00	7.53	0.00	0.00	0.18	2.89	0.00
33	ER11a	ExonRegion	0	7.40	86.13	0.84	0.56	20.87	8.92	1.46
34	E11a_E12a	KnownJunction	0	4.96	75.24	0.63	0.00	29.74	5.12	1.15
35	ER12a	ExonRegion	0	5.41	69.97	0.42	0.00	19.58	8.62	1.05
36	E12a_E13a	KnownJunction	0	0.00	14.37	0.00	0.00	2.03	0.00	0.00
37	E12a_E14a	KnownJunction	0	3.71	32.76	0.00	0.00	14.64	1.42	0.00
38	E13a_E14a	KnownJunction	0	0.00	4.05	0.00	0.00	1.13	0.00	0.00
39	ER13a	ExonRegion	0	0.00	9.80	0.00	0.00	1.67	0.00	0.00
40	ER14a	ExonRegion	0	4.66	55.27	0.00	0.48	17.92	4.72	0.00
41	E14a_E15a	KnownJunction	0	4.57	55.98	0.00	1.33	13.30	7.99	0.00
42	ER15a	ExonRegion	0	8.20	72.73	0.00	1.34	23.96	6.69	0.43
43	E15a_E16a	KnownJunction	0	5.91	50.07	0.00	2.93	19.59	7.29	0.89
44	ER16a	ExonRegion	0	10.18	47.32	0.00	1.71	29.49	3.78	1.79
45	E16a_E17a	KnownJunction	0	5.44	44.29	0.00	2.71	24.44	6.73	0.53
46	ER17a	ExonRegion	0	4.68	47.85	0.00	1.04	16.46	4.38	0.62
47	E17a_E18a	KnownJunction	0	6.63	54.22	0.00	0.00	20.03	4.98	0.00
48	ER18a	ExonRegion	0	5.30	44.99	0.69	2.15	14.31	3.26	0.39
49	E18a_E19a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
50	E18a_E23a	NovelJunction	0	1.40	30.03	0.60	0.00	12.96	0.00	0.00
51	E18a_E23b	NovelJunction	0	0.00	10.93	0.00	0.00	0.00	1.18	0.00
52	E18b_E23c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
53	E18c_E23b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
54	ER18b	ExonRegion	0	1.54	32.19	0.68	0.00	8.50	0.00	0.00
55	ER18c	ExonRegion	0	2.31	27.94	0.68	0.00	9.72	0.00	0.00
56	E19a_E20a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
57	ER19a	ExonRegion	0	0.00	0.24	0.00	0.00	0.05	0.08	0.00
58	ER20a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
59	E20a_E21a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
60	ER21a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
61	E21a_E22a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
62	E21a_E23a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
63	ER22a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
64	E22a_E23d	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
65	ER23a	ExonRegion	0	0.58	7.29	0.17	0.00	2.43	0.00	0.00
66	ER23b	ExonRegion	0	2.31	37.66	0.68	0.00	9.72	0.00	0.00
67	ER23c	ExonRegion	0	3.07	41.41	0.49	0.19	14.85	0.39	0.00
68	E23_Ad	KnownBoundary	0	5.54	50.81	1.39	1.14	15.93	1.18	0.00
69	ER23d	ExonRegion	0	5.68	43.06	1.67	1.74	12.48	2.43	0.00
70	E23a_E24a	KnownJunction	0	4.27	46.82	0.89	1.52	17.11	1.05	0.00
71	ER24a	ExonRegion	0	4.32	55.62	1.00	1.68	15.78	3.69	0.00
72	E24a_E25a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
73	E24a_E26a	KnownJunction	0	1.74	44.74	0.00	2.79	10.58	3.24	0.00
74	ER25a	ExonRegion	0	0.00	0.20	0.00	0.00	0.00	0.23	0.00
75	E25_Da	KnownBoundary	0	0.00	1.16	0.00	1.44	0.00	1.23	0.00
76	ER25b	ExonRegion	0	0.49	1.41	0.00	0.00	0.25	0.12	0.00
77	ER26a	ExonRegion	0	3.90	50.10	0.48	2.54	10.79	5.54	0.25
78	E26a_E27a	KnownJunction	0	9.56	58.98	0.00	3.68	14.94	9.70	0.00
79	ER27a	ExonRegion	0	5.85	55.44	0.44	4.79	30.85	6.55	0.99
80	E27a_E28a	KnownJunction	0	0.00	5.86	0.00	0.00	1.18	5.90	0.00
81	E27a_E29a	KnownJunction	0	6.51	44.19	0.00	3.03	16.60	7.88	0.72
82	ER28a	ExonRegion	0	0.00	7.03	0.00	0.77	0.87	6.21	0.00
83	E28a_E29a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
84	ER29a	ExonRegion	0	7.22	59.07	0.22	2.44	23.96	10.31	0.30
85	E29_Da	KnownBoundary	0	6.48	38.88	0.76	1.54	21.39	4.80	0.00
86	ER29b	ExonRegion	0	9.71	24.55	0.36	0.44	23.61	3.87	0.74