Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ANKRD42	Gene	0	25.01	42.36	24.57	23.97	8.60	20.98	13.38
2	393392	Transcript	0	13.09	36.39	21.47	18.61	3.89	16.77	6.91
3	393389	Transcript	0	24.63	49.96	22.58	30.66	9.88	30.90	15.07
4	342658	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	260047	Transcript	0	4.77	7.18	5.83	4.38	2.77	3.32	4.80
6	IG7	Intergenic	0	6.62	13.70	12.43	7.38	5.74	5.71	3.57
7	IG7_SR1	SilentIntergenicRegion	0	4.55	4.22	11.14	2.42	7.80	2.09	3.18
8	IG7_AR2	ActiveIntergenicRegion	0	6.65	8.75	14.59	4.93	9.41	2.94	5.53
9	IG7_AR3	ActiveIntergenicRegion	0	5.60	4.90	13.85	2.94	4.68	1.32	2.38
10	IG7_AR4	ActiveIntergenicRegion	0	14.68	49.88	22.04	26.78	5.32	21.17	6.61
11	ER1a	ExonRegion	1	22.78	67.98	37.92	35.63	7.41	31.22	9.31
12	E1_Ab	KnownBoundary	0	37.32	90.79	59.92	65.40	13.30	51.94	17.70
13	ER1b	ExonRegion	0	31.09	86.28	34.01	50.39	8.98	40.29	14.82
14	E1_Da	NovelBoundary	1	6.54	4.47	10.03	3.90	0.00	6.32	0.00
15	E1a_E2a	KnownJunction	0	60.83	117.38	56.92	70.90	16.23	33.77	27.85
16	I1_SR1	SilentIntronRegion	0	4.57	4.75	8.75	9.95	0.31	3.64	0.43
17	I1_AR1	ActiveIntronRegion	0	9.22	2.73	11.43	9.51	0.00	7.36	0.76
18	I1_AR2	ActiveIntronRegion	1	11.27	4.18	16.71	12.26	0.00	8.31	0.67
19	I1_AR3	ActiveIntronRegion	1	12.42	6.17	20.24	14.12	0.00	8.04	0.67
20	I1_SR2	SilentIntronRegion	1	12.98	7.83	22.13	10.67	0.00	6.27	0.90
21	I1_AR4	ActiveIntronRegion	1	8.65	7.25	19.79	6.35	0.27	4.09	0.98
22	ER2a	ExonRegion	0	77.52	149.08	75.30	82.66	31.12	58.33	38.38
23	E2_Da	KnownBoundary	0	75.25	120.61	66.94	57.32	33.80	57.67	31.13
24	E2a_E3a	KnownJunction	0	20.31	42.87	15.15	16.90	7.40	10.37	7.58
25	ER2b	ExonRegion	0	55.46	100.70	55.30	72.49	23.15	57.53	32.57
26	E2_Db	NovelBoundary	1	21.31	12.66	37.22	7.61	2.21	2.79	0.89
27	E2b_E3a	KnownJunction	0	43.04	99.12	35.01	50.17	16.39	66.06	27.70
28	I2	Intron	1	19.91	8.21	36.32	10.18	0.68	6.00	1.39
29	I2_SR1	SilentIntronRegion	1	19.93	8.22	36.35	10.19	0.68	6.01	1.39
30	E3_Aa	NovelBoundary	1	63.37	21.73	76.15	36.17	0.00	23.96	2.97
31	ER3a	ExonRegion	0	104.84	163.14	97.58	83.38	28.78	79.34	43.26
32	E3_Da	NovelBoundary	1	25.20	5.10	25.21	6.37	2.17	1.21	0.67
33	E3a_E4a	KnownJunction	0	121.42	144.05	110.95	98.48	42.53	80.91	49.11
34	I3	Intron	1	6.72	1.97	12.45	3.05	0.15	1.09	0.56
35	I3_SR1	SilentIntronRegion	1	6.72	1.97	12.46	3.05	0.15	1.09	0.56
36	E4_Aa	NovelBoundary	1	20.40	6.70	25.03	6.12	0.00	1.61	0.62
37	ER4a	ExonRegion	0	92.51	136.19	90.98	88.25	33.27	77.99	45.82
38	E4_Da	NovelBoundary	1	21.08	4.70	43.96	10.43	1.15	3.35	0.00
39	E4a_E6a	KnownJunction	0	73.49	106.40	66.99	57.70	26.46	51.75	37.85
40	I4	Intron	1	13.25	4.60	34.69	9.57	0.74	4.05	1.11
41	I4_SR1	SilentIntronRegion	1	13.82	5.67	38.33	10.84	0.76	4.84	1.21
42	I4_AR1	ActiveIntronRegion	1	12.62	3.29	30.32	8.05	0.71	3.11	1.00
43	ER5a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	E6_Aa	NovelBoundary	1	19.56	12.40	45.93	6.83	0.00	13.99	0.82
45	ER6a	ExonRegion	0	77.96	101.73	77.95	62.48	20.83	45.73	31.16
46	E6_Da	NovelBoundary	1	23.35	11.40	46.26	10.48	3.16	9.43	3.48
47	E6a_E9a	KnownJunction	0	11.22	9.64	4.33	4.25	8.60	12.89	9.26
48	I6	Intron	0	33.87	24.25	44.19	22.90	7.07	12.06	7.19
49	I6_SR1	SilentIntronRegion	1	28.94	13.16	56.71	14.67	3.12	7.72	5.73
50	I6_AR1	ActiveIntronRegion	0	37.86	32.76	35.20	29.27	10.10	15.41	8.34
51	ER7a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
52	ER8a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
53	ER9a	ExonRegion	1	19.59	16.29	8.02	10.52	6.86	9.59	10.18
54	E9a_E10a	KnownJunction	1	23.05	17.50	8.95	9.89	14.85	8.44	8.31
55	ER10a	ExonRegion	1	17.31	12.73	7.85	6.43	8.74	8.43	11.49
56	E10a_E11a	KnownJunction	0	12.60	15.00	8.59	3.66	7.22	10.43	14.29
57	ER11a	ExonRegion	0	11.27	10.31	7.39	3.89	8.66	8.47	9.51
58	E11a_E12a	KnownJunction	1	11.05	13.95	1.77	0.00	6.11	4.74	5.25
59	E12_Aa	NovelBoundary	0	0.58	1.63	1.67	2.74	0.00	9.97	0.00
60	ER12a	ExonRegion	0	10.63	13.43	5.40	4.12	8.67	9.16	8.95
61	E12a_E13a	KnownJunction	1	8.91	18.47	3.65	3.03	3.30	4.61	8.94
62	E12a_E14a	KnownJunction	0	0.00	0.00	1.55	0.00	0.00	1.63	0.00
63	ER13a	ExonRegion	0	9.20	15.68	6.27	3.75	4.62	4.89	8.17
64	E13a_E14a	KnownJunction	0	6.58	9.22	9.71	7.48	7.22	4.13	6.05
65	ER14a	ExonRegion	0	9.26	14.60	9.47	8.12	4.47	8.19	5.55
66	E14_Da	KnownBoundary	0	7.89	4.18	5.20	4.98	0.92	0.00	0.54
67	E14a_E15a	KnownJunction	0	3.32	3.02	9.96	8.91	2.12	3.75	4.53
68	E14a_E15b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
69	ER14b	ExonRegion	0	3.40	4.80	5.03	1.58	0.36	2.31	4.52
70	ER15a	ExonRegion	0	3.07	3.64	8.81	7.48	1.62	4.90	4.05
71	ER15b	ExonRegion	0	9.26	7.95	11.50	4.35	2.64	5.11	6.37
72	ER15c	ExonRegion	0	2.31	0.24	2.44	0.00	0.49	0.98	1.89
73	IG8_AR2	ActiveIntergenicRegion	0	10.20	3.61	9.98	2.25	7.00	3.20	9.51