Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	NAALAD2	Gene	0	5.65	9.83	13.36	16.70	28.92	26.86	3.87
2	375944	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
3	321955	Transcript	0	0.02	0.03	0.10	0.59	29.28	4.21	0.00
4	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	7.62	1.13	0.00
5	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	2.24	0.00	0.00
6	ER2a	ExonRegion	1	0.00	0.00	0.00	1.69	24.84	10.99	0.00
7	E2a_E3a	KnownJunction	1	0.00	0.00	0.00	0.00	40.00	17.77	0.00
8	ER3a	ExonRegion	1	0.00	0.00	0.00	1.01	35.13	15.43	0.00
9	E3a_E4a	KnownJunction	1	0.00	0.00	0.00	0.00	39.26	13.00	0.00
10	E4_Aa	NovelBoundary	0	5.59	0.00	3.49	2.82	1.18	1.63	24.31
11	ER4a	ExonRegion	0	4.37	0.00	1.94	0.00	38.90	6.35	6.34
12	E4_Da	NovelBoundary	0	11.97	0.00	15.25	3.01	0.00	2.71	28.92
13	E4a_E5a	KnownJunction	1	0.00	0.00	0.00	0.00	34.00	11.66	0.00
14	ER5a	ExonRegion	0	0.03	0.00	0.01	0.00	32.41	7.32	0.02
15	E5a_E6a	KnownJunction	1	0.00	0.00	0.00	0.00	31.56	15.01	0.00
16	ER6a	ExonRegion	0	0.00	0.00	0.54	0.01	29.96	5.95	0.28
17	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	28.61	4.37	0.00
18	E6a_E19a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	ER7a	ExonRegion	0	0.00	0.00	0.00	0.00	32.21	2.06	0.00
20	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	25.13	0.00	0.00
21	I7	Intron	0	0.00	0.14	0.38	0.28	10.10	0.55	0.00
22	I7_AR1	ActiveIntronRegion	0	0.00	0.14	0.38	0.28	10.12	0.55	0.00
23	ER8a	ExonRegion	0	0.00	0.00	0.52	0.60	22.95	2.08	0.00
24	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	1.60	25.20	3.62	0.00
25	ER9a	ExonRegion	0	0.00	0.00	0.00	1.51	33.16	4.03	0.00
26	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	29.55	6.59	0.00
27	ER10a	ExonRegion	1	0.00	0.00	0.43	0.79	38.19	8.17	0.00
28	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	44.22	7.40	0.00
29	ER11a	ExonRegion	0	0.00	0.00	0.00	0.33	42.35	5.16	0.00
30	E11_Da	NovelBoundary	0	0.00	0.00	0.00	1.22	10.30	5.36	0.00
31	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	1.44	15.68	8.90	0.00
32	ER12a	ExonRegion	0	0.00	0.00	0.00	1.05	21.99	3.49	0.00
33	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	25.80	1.66	0.00
34	E12a_E14a	NovelJunction	0	0.00	0.00	0.00	0.00	8.18	1.05	0.00
35	ER13a	ExonRegion	0	0.00	0.00	0.00	0.37	19.20	2.56	0.00
36	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	1.38	17.98	4.58	0.00
37	ER14a	ExonRegion	0	0.00	0.00	0.00	0.76	29.13	6.77	0.00
38	E14a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	21.44	7.34	0.00
39	ER15a	ExonRegion	0	0.00	0.00	0.00	0.99	23.91	2.59	0.00
40	E15a_E16a	KnownJunction	0	0.00	0.00	0.00	0.00	25.20	1.66	0.00
41	ER16a	ExonRegion	0	0.44	0.70	0.97	1.42	33.88	5.31	0.00
42	E16a_E17a	KnownJunction	0	0.00	0.00	0.00	0.00	34.21	1.50	0.00
43	ER17a	ExonRegion	0	0.00	0.00	0.00	0.00	25.72	2.75	0.00
44	E17a_E18a	KnownJunction	0	0.00	0.00	0.00	0.00	27.71	4.34	0.00
45	ER18a	ExonRegion	0	0.00	0.08	0.58	2.40	38.72	6.76	0.00
46	E18a_E19a	KnownJunction	0	0.00	0.00	0.00	0.00	49.86	1.66	0.00
47	I18	Intron	0	11.60	20.21	20.73	34.67	2.60	48.06	6.40
48	I18_AR1	ActiveIntronRegion	0	13.15	32.86	26.79	56.47	4.09	94.35	10.95
49	I18_SR2	SilentIntronRegion	0	15.35	29.22	34.74	57.45	2.82	83.70	11.47
50	I18_AR2	ActiveIntronRegion	0	25.03	34.14	44.32	58.71	4.68	79.41	10.06
51	I18_SR3	SilentIntronRegion	0	34.82	54.88	45.58	76.53	3.67	100.87	11.42
52	I18_AR3	ActiveIntronRegion	0	34.72	53.45	40.93	78.50	6.12	82.85	13.81
53	E19_Aa	NovelBoundary	0	36.98	69.86	46.79	123.91	6.69	101.62	21.33
54	ER19a	ExonRegion	0	16.59	29.61	39.79	49.13	27.45	69.25	11.04
55	IG3	Intergenic	0	21.58	33.93	40.77	46.49	20.13	51.24	9.82
56	IG3_AR1	ActiveIntergenicRegion	0	21.62	35.73	54.09	58.87	8.92	90.24	12.85
57	IG3_SR1	SilentIntergenicRegion	0	23.39	39.74	42.62	59.37	11.48	62.60	12.77
58	IG3_AR2	ActiveIntergenicRegion	0	22.85	38.82	43.98	51.58	25.22	54.65	11.38
59	IG3_SR2	SilentIntergenicRegion	0	20.83	18.05	31.59	29.46	11.63	33.47	5.42
60	IG3_AR3	ActiveIntergenicRegion	0	16.52	25.43	32.20	31.73	15.87	37.59	5.36