Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	EED	Gene	0	88.67	89.13	107.54	123.32	131.41	103.10	53.90
2	327320	Transcript	1	26.18	11.41	53.52	21.53	4.81	18.23	6.99
3	263360	Transcript	0	0	0	0	0	0	0	0
4	351625	Transcript	1	8.35	6.89	13.61	6.79	8.98	7.90	26.10
5	ER1a	ExonRegion	0	28.63	51.34	28.09	51.33	37.15	40.33	18.59
6	E1a_E2a	KnownJunction	0	119.10	132.59	128.97	156.72	86.82	116.87	59.52
7	E1a_E11a	NovelJunction	0	8.46	11.06	11.24	13.98	0.00	3.59	0.89
8	ER2a	ExonRegion	0	134.02	147.02	162.28	192.24	206.99	135.70	100.33
9	E2a_E3a	KnownJunction	0	130.03	112.63	209.85	181.00	441.55	135.61	100.43
10	E2a_E4a	NovelJunction	1	24.88	31.60	15.26	54.18	2.93	26.24	0.00
11	ER3a	ExonRegion	0	89.49	134.03	151.54	164.83	240.80	131.04	97.21
12	E3a_E4a	KnownJunction	0	93.56	135.27	137.55	153.82	181.89	116.42	79.38
13	ER4a	ExonRegion	0	139.23	172.73	162.63	193.09	194.50	156.20	98.73
14	E4a_E5a	KnownJunction	0	161.36	191.55	163.62	224.48	264.23	199.02	106.51
15	ER5a	ExonRegion	0	199.34	183.81	197.00	243.90	316.53	189.75	107.31
16	E5_Da	NovelBoundary	1	24.57	4.26	28.30	6.20	0.00	3.78	0.87
17	E5a_E6a	KnownJunction	0	252.75	231.87	222.58	306.54	350.75	249.53	102.70
18	ER6a	ExonRegion	0	256.82	203.47	229.42	313.52	354.63	242.16	111.62
19	E6_Da	NovelBoundary	0	33.05	7.57	21.58	7.12	3.20	3.97	7.21
20	E6a_E7a	KnownJunction	0	232.66	175.02	199.06	267.09	439.16	210.03	118.51
21	E6a_E11a	NovelJunction	1	1.54	0.00	3.19	10.24	0.00	1.66	0.00
22	I6_AR9	ActiveIntronRegion	1	19.67	5.45	26.20	9.82	1.55	6.64	1.58
23	E7_Aa	NovelBoundary	1	24.45	6.54	28.70	11.78	0.95	9.97	1.59
24	ER7a	ExonRegion	0	217.10	165.60	209.97	220.98	322.59	189.62	90.57
25	E7a_E8a	KnownJunction	0	160.76	123.00	177.73	138.14	308.61	159.59	55.10
26	E7a_E11a	NovelJunction	1	25.85	13.08	31.08	30.69	5.81	7.53	6.92
27	ER8a	ExonRegion	0	130.08	108.66	153.65	130.30	235.30	130.29	72.21
28	E8a_E9a	KnownJunction	0	95.70	70.62	145.30	92.41	195.47	96.08	85.64
29	E8a_E11a	NovelJunction	1	20.45	21.25	19.82	33.13	6.27	17.88	1.50
30	ER9a	ExonRegion	0	105.26	90.51	145.57	121.18	186.44	111.35	78.86
31	E9a_E10a	KnownJunction	1	5.01	7.88	17.22	5.77	6.59	16.11	32.43
32	E9a_E11a	KnownJunction	0	121.24	93.58	123.38	131.58	172.85	102.29	49.64
33	ER10a	ExonRegion	0	10.60	5.88	13.67	7.45	12.22	7.60	26.33
34	E10a_E11a	KnownJunction	0	9.43	6.91	9.96	7.15	8.14	0.00	19.53
35	ER11a	ExonRegion	0	150.06	135.97	208.34	187.73	226.80	171.10	93.34
36	E11_Da	NovelBoundary	1	30.41	13.06	60.84	46.05	7.63	9.81	7.34
37	E11a_E12a	KnownJunction	0	169.09	126.65	146.95	163.01	198.39	167.15	67.83
38	I11	Intron	1	31.28	10.42	54.26	35.25	9.48	11.69	7.17
39	I11_AR1	ActiveIntronRegion	1	32.00	10.01	55.67	34.07	9.58	11.43	7.66
40	I11_SR1	SilentIntronRegion	1	39.70	22.22	68.19	76.74	9.28	22.83	5.96
41	I11_AR2	ActiveIntronRegion	1	21.11	10.74	35.15	33.47	8.69	10.63	2.47
42	E12_Aa	NovelBoundary	1	19.76	14.61	71.56	55.51	5.23	23.85	6.02
43	ER12a	ExonRegion	0	135.24	133.73	171.16	211.46	167.11	177.77	74.50
44	E12_Da	KnownBoundary	1	21.33	10.40	45.53	14.93	0.90	9.27	3.64
45	E12a_E12b	KnownJunction	0	99.36	125.92	136.00	196.19	148.14	159.91	83.19
46	ER12b	ExonRegion	1	26.18	11.41	53.52	21.53	4.81	18.23	6.99
47	E12_Ab	KnownBoundary	1	26.34	19.73	48.11	37.33	2.21	26.48	7.65
48	ER12c	ExonRegion	0	74.47	86.52	97.75	168.01	106.84	148.83	52.57
49	IG21_AR3	ActiveIntergenicRegion	0	12.56	13.51	11.98	20.48	4.98	25.08	6.84
50	IG21_SR4	SilentIntergenicRegion	0	16.20	4.13	13.92	10.82	3.73	12.92	2.85
51	IG21_AR6	ActiveIntergenicRegion	0	12.59	9.66	11.76	18.12	2.09	34.25	4.45