Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	RSF1	Gene	0	107.48	115.12	142.43	208.97	164.20	202.35	54.23
2	360355	Transcript	0	3.00	17.13	2.87	19.02	3.94	26.05	0.00
3	308488	Transcript	0	64.79	153.76	125.44	243.80	134.08	197.72	64.14
4	IG28	Intergenic	0	3.26	2.12	3.98	13.01	2.68	11.78	0.00
5	IG28_AR1	ActiveIntergenicRegion	0	5.12	3.33	6.25	19.91	3.72	17.40	0.00
6	ER1a	ExonRegion	0	11.20	28.82	11.54	53.03	10.05	44.90	4.28
7	E1a_E2a	KnownJunction	0	45.50	82.89	42.48	138.33	33.66	101.41	23.39
8	Ix	Intron	0	24.38	5.37	32.28	9.53	10.17	3.58	3.85
9	Ix_AR6	ActiveIntronRegion	0	23.86	6.99	43.78	12.82	7.90	4.16	4.49
10	Ix_SR4	SilentIntronRegion	0	20.15	4.90	29.88	8.53	7.32	3.37	3.58
11	Ix_AR5	ActiveIntronRegion	0	36.21	6.77	51.99	9.29	15.51	4.63	5.62
12	Ix_AR4	ActiveIntronRegion	0	26.79	6.21	37.50	8.73	11.24	2.52	6.11
13	Ix_SR3	SilentIntronRegion	0	34.62	4.62	38.73	12.93	13.08	4.12	4.02
14	Ix_AR3	ActiveIntronRegion	0	34.00	3.20	42.82	11.59	15.53	1.10	5.46
15	Ix_AR2	ActiveIntronRegion	0	21.97	3.50	31.12	6.89	8.71	1.10	2.74
16	Ix_SR2	SilentIntronRegion	0	20.72	0.13	35.34	2.01	18.36	1.37	5.00
17	Ix_AR1	ActiveIntronRegion	0	38.80	5.31	40.72	3.30	19.09	3.02	4.61
18	ER2a	ExonRegion	0	61.63	117.56	95.38	201.22	99.95	153.80	51.36
19	E2a_E3a	KnownJunction	0	52.74	134.54	108.75	206.41	118.81	175.65	50.22
20	E2a_E4a	KnownJunction	0	3.00	17.13	2.87	19.02	3.94	26.05	0.00
21	ER3a	ExonRegion	0	65.45	163.09	121.78	255.24	141.18	204.85	65.76
22	E3a_E4a	KnownJunction	0	76.19	163.64	145.79	269.75	142.24	212.66	76.43
23	ER4a	ExonRegion	0	110.07	179.79	165.53	313.13	184.43	279.97	80.21
24	E4a_E5a	KnownJunction	0	133.22	176.89	151.51	286.11	266.44	276.79	62.80
25	E4a_E6a	NovelJunction	1	4.06	3.26	4.12	9.75	0.00	0.00	0.00
26	ER5a	ExonRegion	0	189.34	215.45	210.26	316.75	200.76	342.91	76.40
27	E5a_E6a	KnownJunction	0	166.43	162.83	164.64	247.29	167.41	241.39	58.97
28	E5a_E7a	NovelJunction	1	9.51	2.65	11.68	18.64	0.00	12.22	0.00
29	ER6a	ExonRegion	0	114.94	128.44	170.80	211.81	156.13	193.82	60.84
30	E6_Da	NovelBoundary	0	32.83	34.94	68.16	70.22	60.24	75.28	17.43
31	E6a_E7a	KnownJunction	0	83.45	73.01	158.00	167.18	237.74	167.55	47.87
32	E7_Aa	NovelBoundary	1	27.32	0.00	40.08	0.00	3.30	0.00	0.00
33	ER7a	ExonRegion	0	146.60	142.69	200.27	249.75	276.39	214.10	73.17
34	E7a_E8a	KnownJunction	0	152.53	136.59	188.81	258.67	281.61	179.00	72.39
35	I7_AR2	ActiveIntronRegion	0	22.35	12.84	21.56	8.00	8.37	5.14	6.01
36	ER8a	ExonRegion	0	134.60	136.69	153.50	267.94	269.64	204.90	72.60
37	E8a_E9a	KnownJunction	0	112.94	124.47	155.60	253.11	204.69	193.28	64.39
38	ER9a	ExonRegion	0	129.28	125.68	159.91	245.70	253.48	201.94	65.96
39	E9a_E10a	KnownJunction	0	111.72	112.13	132.42	252.38	270.46	184.57	61.31
40	ER10a	ExonRegion	0	118.97	139.00	166.81	288.23	243.43	239.14	73.41
41	E10a_E11a	KnownJunction	0	97.15	128.73	141.30	255.85	188.76	225.87	61.05
42	ER11a	ExonRegion	0	123.42	136.04	189.06	276.22	179.48	287.13	74.36
43	E11a_E12a	KnownJunction	0	110.82	136.35	161.24	282.83	147.77	275.58	66.28
44	ER12a	ExonRegion	0	87.56	126.31	130.49	259.97	111.22	284.63	54.98
45	E12a_E13a	KnownJunction	0	78.43	107.32	106.86	223.01	129.49	263.66	45.90
46	ER13a	ExonRegion	0	114.86	112.58	150.49	250.83	184.78	262.53	69.93
47	E13a_E14a	KnownJunction	0	69.60	144.57	101.68	295.62	132.92	283.51	59.91
48	ER14a	ExonRegion	0	134.16	136.67	145.99	269.20	233.61	291.02	61.96
49	E14a_E15a	KnownJunction	0	212.53	121.35	193.41	283.13	252.52	361.23	56.47
50	ER15a	ExonRegion	0	171.00	144.51	165.87	279.11	245.26	340.79	62.95
51	E15a_E16a	KnownJunction	0	103.11	131.59	107.25	234.45	235.35	219.52	42.92
52	ER16a	ExonRegion	0	90.09	72.58	105.77	155.88	149.19	164.33	36.24
53	IG27_AR2	ActiveIntergenicRegion	0	32.17	18.75	44.66	47.12	48.12	50.04	19.23
54	IG27_SR2	SilentIntergenicRegion	0	26.87	9.19	29.45	14.77	24.31	26.19	10.49
55	IG27_AR1	ActiveIntergenicRegion	0	12.78	6.12	18.11	14.52	22.64	18.70	11.18