Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	XRRA1	Gene	0	11.49	33.47	8.56	55.82	5.86	37.60	18.51
2	340360	Transcript	0	0.52	10.15	0.27	15.74	0.00	15.74	4.64
3	321448	Transcript	0	3.90	14.90	2.21	21.81	2.20	16.45	11.81
4	398418	Transcript	0	0.04	0.07	0.02	0.28	0.00	0.03	0.00
5	344880	Transcript	0	0.00	1.31	0.00	1.38	0.00	0.00	0.00
6	ER1a	ExonRegion	0	0.43	2.35	0.00	4.94	0.00	1.11	0.06
7	E1_Ab	KnownBoundary	0	1.70	5.78	0.78	15.14	0.00	4.31	0.00
8	ER1b	ExonRegion	0	0.48	15.03	0.26	27.59	1.58	15.93	3.24
9	E1a_E2a	KnownJunction	0	0.62	11.56	0.56	31.83	0.92	18.36	0.00
10	E1a_E4a	NovelJunction	0	0.00	9.38	0.00	18.96	0.00	6.99	4.57
11	ER2a	ExonRegion	1	2.60	9.27	0.82	28.04	1.11	23.35	1.32
12	E2a_E3a	KnownJunction	0	1.84	8.77	1.77	15.79	0.00	21.63	2.58
13	E2a_E4a	NovelJunction	0	4.89	14.06	2.62	19.21	3.11	30.36	10.58
14	ER3a	ExonRegion	0	2.74	13.20	0.78	19.94	3.79	23.02	1.81
15	E3a_E4a	KnownJunction	0	0.77	15.68	0.89	20.16	0.00	26.24	0.00
16	ER4a	ExonRegion	0	6.30	49.18	7.06	79.38	6.79	61.08	16.58
17	E4a_E5a	KnownJunction	0	14.65	44.48	5.83	87.78	10.56	47.81	15.38
18	E4a_E8a	NovelJunction	0	0.00	13.16	0.00	6.91	0.00	5.74	1.62
19	E4a_E9a	NovelJunction	0	0.62	3.18	0.56	8.32	0.00	3.11	0.00
20	ER5a	ExonRegion	0	6.31	24.20	3.78	39.64	5.11	22.35	8.70
21	E5_Da	NovelBoundary	1	4.16	11.24	4.28	35.60	3.00	9.73	7.65
22	E5a_E6a	KnownJunction	0	1.00	6.28	2.13	9.21	1.18	8.60	3.21
23	ER6a	ExonRegion	0	15.65	22.98	12.91	38.33	9.15	27.49	16.33
24	E6a_E7a	KnownJunction	0	28.97	32.76	17.76	47.71	8.30	46.63	22.30
25	E6a_E8a	NovelJunction	0	3.19	20.68	4.67	36.38	0.00	31.03	5.85
26	ER7a	ExonRegion	0	21.54	35.47	11.61	51.62	10.10	39.39	24.27
27	E7a_E8a	KnownJunction	0	13.02	21.60	8.42	31.45	6.48	41.03	21.02
28	ER8a	ExonRegion	0	13.56	58.77	11.03	87.19	11.75	56.02	28.17
29	E8a_E9a	KnownJunction	0	10.58	41.56	5.73	79.46	5.56	40.66	20.81
30	I8	Intron	0	9.88	6.10	8.29	7.79	0.41	4.35	3.51
31	I8_AR1	ActiveIntronRegion	0	17.95	9.48	25.02	25.36	0.96	15.37	7.35
32	I8_AR2	ActiveIntronRegion	0	13.50	7.02	11.22	12.21	0.88	5.53	6.06
33	I8_AR3	ActiveIntronRegion	0	9.55	5.27	7.72	3.49	0.23	1.08	2.23
34	I8_SR4	SilentIntronRegion	0	11.83	8.43	7.97	8.57	0.31	4.77	4.51
35	E9_Aa	NovelBoundary	0	9.56	6.49	11.50	12.90	0.00	8.09	6.42
36	ER9a	ExonRegion	0	17.84	58.49	10.64	93.22	10.57	76.26	34.63
37	E9_Da	NovelBoundary	0	10.56	5.54	10.45	3.77	0.00	4.37	4.26
38	E9a_E10a	KnownJunction	0	11.95	56.46	5.68	111.21	10.40	74.05	34.64
39	E10_Aa	NovelBoundary	0	16.84	9.98	11.19	13.82	1.04	4.18	8.86
40	ER10a	ExonRegion	0	24.15	87.20	14.44	122.62	11.23	85.62	37.05
41	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
42	E10a_E13a	KnownJunction	0	1.03	12.58	3.56	32.21	1.15	25.54	2.29
43	E10a_E14a	KnownJunction	0	0.00	1.31	0.00	1.38	0.00	0.00	0.00
44	E10a_E15a	NovelJunction	0	6.61	7.83	2.00	5.55	6.94	9.49	17.83
45	E10a_E16a	KnownJunction	0	1.03	14.66	0.00	23.38	0.00	17.45	1.72
46	E10a_E17a	NovelJunction	0	0.78	11.30	2.62	26.41	1.13	15.68	1.22
47	ER11a	ExonRegion	0	0.13	0.20	0.06	0.83	0.00	0.10	0.00
48	I11	Intron	0	9.63	5.85	8.71	5.06	0.50	3.97	3.42
49	I11_AR1	ActiveIntronRegion	0	9.64	6.17	9.92	4.96	0.59	3.56	2.77
50	I11_SR2	SilentIntronRegion	0	12.67	6.91	8.10	7.05	0.39	6.54	6.50
51	E12_Aa	NovelBoundary	0	269.23	255.91	344.69	244.36	122.83	220.05	238.92
52	ER12a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
53	E12_Da	NovelBoundary	0	143.40	129.94	144.34	131.26	81.61	96.59	88.93
54	I12	Intron	0	14.16	10.54	8.52	13.08	2.03	8.01	5.71
55	I12_SR1	SilentIntronRegion	0	10.81	10.00	6.93	11.94	1.75	7.76	4.89
56	I12_AR1	ActiveIntronRegion	0	19.28	11.36	10.96	14.83	2.46	8.40	6.97
57	E13_Aa	NovelBoundary	1	12.63	10.77	8.98	21.29	3.09	6.19	3.90
58	ER13a	ExonRegion	0	1.54	12.12	2.48	20.04	1.19	16.18	5.02
59	E13_Da	NovelBoundary	0	18.06	9.64	13.61	10.76	5.23	7.53	7.71
60	E13a_E14a	KnownJunction	0	0.93	10.17	0.00	10.10	0.95	12.30	6.25
61	E13a_E17a	NovelJunction	0	2.02	2.99	4.04	12.06	0.00	7.29	5.56
62	I13	Intron	0	12.95	9.43	11.08	8.36	2.19	5.90	5.99
63	I13_SR1	SilentIntronRegion	0	10.63	5.48	4.27	4.01	2.14	0.80	3.48
64	I13_AR1	ActiveIntronRegion	0	1.86	10.11	4.96	6.97	0.98	8.38	3.05
65	I13_AR2	ActiveIntronRegion	0	9.44	7.62	6.68	6.26	2.60	5.55	3.33
66	I13_SR2	SilentIntronRegion	0	14.35	9.96	12.65	9.10	2.22	6.20	6.76
67	E14_Aa	NovelBoundary	1	18.29	13.66	10.96	4.50	4.36	10.18	5.63
68	ER14a	ExonRegion	0	7.96	13.98	2.70	23.02	0.44	14.37	8.90
69	E14_Da	NovelBoundary	0	5.91	7.54	5.52	15.79	0.00	5.76	4.40
70	E14_Db	NovelBoundary	0	10.77	8.25	5.79	9.18	1.18	9.76	2.41
71	E14b_E15a	KnownJunction	0	0.00	3.02	0.00	6.26	0.00	4.31	0.69
72	E14b_E17a	NovelJunction	0	0.00	4.18	0.89	4.85	0.00	11.15	0.00
73	ER14b	ExonRegion	0	2.69	3.49	0.42	11.69	0.35	7.82	2.61
74	I14	Intron	0	12.89	8.16	6.63	7.39	2.20	3.78	4.03
75	I14_AR1	ActiveIntronRegion	0	17.22	10.15	8.24	6.71	2.56	4.58	3.69
76	I14_SR2	SilentIntronRegion	0	10.84	7.13	6.28	5.27	2.29	3.66	3.71
77	I14_AR2	ActiveIntronRegion	0	15.19	10.04	6.86	10.53	2.68	5.04	5.04
78	E15_Aa	NovelBoundary	0	8.73	10.32	3.69	3.63	3.30	7.34	6.86
79	ER15a	ExonRegion	0	5.90	7.20	2.51	13.20	6.63	4.59	17.74
80	E15_Da	NovelBoundary	0	3.79	9.77	3.92	8.80	0.00	2.55	4.04
81	E15a_E16a	KnownJunction	1	5.79	6.46	0.89	10.29	3.32	2.09	22.50
82	ER16a	ExonRegion	0	10.61	30.57	7.43	42.07	7.00	34.12	26.62
83	E16_Da	NovelBoundary	0	8.04	6.54	4.58	2.68	0.00	2.60	8.47
84	E16a_E17a	KnownJunction	0	10.16	40.67	3.82	49.39	9.84	37.60	29.64
85	I16	Intron	0	7.88	9.53	5.60	5.72	1.63	2.24	3.68
86	I16_AR1	ActiveIntronRegion	0	6.43	10.79	4.98	5.15	1.59	4.59	3.75
87	I16_SR1	SilentIntronRegion	0	8.04	9.39	5.67	5.79	1.64	1.99	3.68
88	E17_Aa	NovelBoundary	0	13.79	13.42	3.75	6.88	1.11	4.18	5.72
89	ER17a	ExonRegion	0	15.81	73.79	11.75	155.21	9.98	73.44	40.40
90	E17_Da	NovelBoundary	0	6.24	13.79	4.40	9.43	0.00	10.72	3.38
91	E17a_E18a	KnownJunction	1	4.79	54.30	8.26	93.57	13.44	60.49	26.13
92	I17	Intron	0	4.65	8.89	6.37	9.26	1.33	3.81	2.92
93	I17_SR1	SilentIntronRegion	0	4.30	13.13	7.18	10.85	0.81	6.78	3.44
94	I17	Intron	0	5.39	10.80	8.48	12.27	1.76	4.19	2.30
95	I17_SR1	SilentIntronRegion	0	5.41	10.84	8.51	12.31	1.77	4.21	2.31
96	E18_Aa	NovelBoundary	1	10.33	25.19	4.30	21.70	2.01	2.84	6.29
97	ER18a	ExonRegion	0	12.41	70.95	13.37	107.03	10.92	83.35	42.38
98	E18_Da	NovelBoundary	1	13.37	15.42	0.89	8.29	1.98	1.31	2.41
99	E18a_E19a	KnownJunction	1	6.53	66.94	10.26	118.71	14.29	82.38	32.79
100	I18	Intron	1	9.62	12.85	9.43	9.24	1.47	4.13	3.18
101	I18_SR1	SilentIntronRegion	0	9.78	12.82	9.50	9.44	1.59	4.30	3.35
102	I18_AR1	ActiveIntronRegion	1	10.48	21.54	17.30	12.24	0.00	5.80	2.02
103	I18_SR2	SilentIntronRegion	1	7.32	11.72	6.93	5.87	0.00	1.40	0.93
104	E19_Aa	NovelBoundary	1	16.34	14.40	17.16	22.76	0.00	6.75	9.34
105	ER19a	ExonRegion	0	20.09	58.73	16.15	95.50	11.98	83.68	39.46
106	E19_Da	NovelBoundary	1	22.20	48.68	17.10	89.75	9.18	42.53	5.59
107	E19a_E20a	KnownJunction	0	8.09	30.71	4.80	50.23	2.33	38.83	27.24
108	E19a_E21a	KnownJunction	1	0.00	5.65	0.55	8.10	0.00	14.04	7.57
109	I19	Intron	0	12.04	20.78	11.09	48.10	3.75	25.45	5.65
110	I19_AR1	ActiveIntronRegion	0	12.15	20.97	11.18	48.51	3.77	25.66	5.70
111	E20_Aa	NovelBoundary	0	13.80	30.58	18.85	77.53	6.73	64.53	6.71
112	ER20a	ExonRegion	0	10.79	39.94	6.61	48.34	5.10	42.77	20.67
113	E20_Da	NovelBoundary	0	14.42	29.45	14.49	59.82	6.34	49.20	5.78
114	E20a_E21a	KnownJunction	1	2.20	23.33	0.79	15.71	0.99	10.05	13.10
115	I20	Intron	0	7.88	36.60	4.91	45.82	8.49	29.04	4.86
116	I20_AR1	ActiveIntronRegion	0	7.93	36.84	4.94	46.12	8.55	29.22	4.88
117	E21_Aa	NovelBoundary	0	11.25	43.35	3.69	69.71	9.61	36.26	5.73
118	ER21a	ExonRegion	0	11.46	22.46	8.91	37.91	4.40	25.78	13.36