Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	ATG2A	Gene	0	64.90	185.72	42.26	67.82	31.59	119.84	35.48
2	377264	Transcript	0	74.82	196.81	52.05	71.98	36.98	124.94	44.10
3	377262	Transcript	0	0.00	0.97	0.00	2.00	0.00	0.00	0.00
4	227459	Transcript	0	3.99	2.58	3.17	1.78	1.26	0.93	0.22
5	ER1a	ExonRegion	0	12.18	45.65	5.23	18.54	5.68	21.41	6.81
6	E1_Ab	KnownBoundary	0	37.60	122.21	15.94	41.15	3.50	58.93	16.90
7	ER1b	ExonRegion	0	58.05	138.84	31.91	48.95	11.09	84.52	27.42
8	E1a_E2a	KnownJunction	1	124.87	166.04	68.20	55.94	33.91	113.87	32.30
9	E1b_E2a	KnownJunction	0	0.82	4.70	2.44	2.63	2.07	1.05	0.00
10	ER1c	ExonRegion	0	2.96	3.04	2.03	2.72	1.71	1.75	0.67
11	ER2a	ExonRegion	0	55.66	147.43	31.29	45.31	31.55	98.48	27.62
12	E2a_E3a	KnownJunction	0	57.28	109.92	36.23	33.84	5.99	96.32	23.37
13	E3a_E38b	KnownJunction	0	0.00	0.97	0.00	2.00	0.00	0.00	0.00
14	ER3a	ExonRegion	0	53.79	122.65	34.03	38.86	8.33	93.96	18.83
15	ER3b	ExonRegion	0	62.42	183.27	42.34	54.28	22.04	116.61	30.41
16	E3b_E4a	KnownJunction	0	75.92	261.24	46.78	66.16	35.92	137.13	36.98
17	ER4a	ExonRegion	0	82.33	238.86	54.91	80.70	23.74	145.57	41.62
18	E4a_E5a	KnownJunction	0	67.46	217.53	50.22	77.40	27.62	103.90	34.22
19	ER5a	ExonRegion	0	61.82	209.63	42.53	66.86	25.22	117.72	36.31
20	E5a_E6a	KnownJunction	0	80.33	232.06	46.63	80.95	28.93	126.33	41.55
21	ER6a	ExonRegion	0	76.26	235.25	46.64	81.80	28.00	138.67	40.42
22	E6a_E7a	KnownJunction	0	121.79	225.80	77.64	95.28	32.34	165.38	55.36
23	E7_Aa	NovelBoundary	0	55.14	86.64	33.89	37.01	6.57	68.45	21.18
24	ER7a	ExonRegion	0	93.14	251.79	61.43	93.74	33.06	159.86	45.91
25	E7a_E8a	KnownJunction	0	97.87	253.91	61.26	113.95	40.00	141.40	37.58
26	ER8a	ExonRegion	0	80.28	244.66	52.98	95.06	31.84	162.18	39.67
27	E8a_E9a	KnownJunction	0	62.59	233.79	40.55	92.62	32.87	116.69	38.51
28	ER9a	ExonRegion	0	86.46	235.95	53.07	91.04	37.99	125.90	47.20
29	E9_Da	NovelBoundary	0	58.15	148.64	26.00	49.39	19.09	77.29	27.82
30	E9a_E41b	KnownJunction	0	8.18	0.00	5.04	0.00	0.00	0.00	0.00
31	E9b_E10a	KnownJunction	0	97.54	218.11	38.21	51.83	39.21	121.70	48.04
32	ER9b	ExonRegion	0	93.57	216.06	37.20	70.31	38.81	121.00	41.36
33	ER10a	ExonRegion	0	91.34	214.75	43.78	87.41	33.44	96.61	46.02
34	E10_Da	NovelBoundary	1	18.08	4.60	4.73	1.25	0.00	4.26	1.61
35	E10a_E11a	KnownJunction	0	78.24	172.55	43.27	66.21	24.34	90.69	40.93
36	E11_Aa	NovelBoundary	1	13.47	11.95	3.55	31.56	0.00	4.90	0.79
37	ER11a	ExonRegion	0	70.15	167.47	33.32	60.34	21.16	95.06	28.05
38	E11a_E12a	KnownJunction	0	70.80	170.37	37.20	47.38	25.82	109.64	42.92
39	ER12a	ExonRegion	0	75.37	173.41	41.69	65.49	25.72	87.94	37.87
40	E12a_E13a	KnownJunction	0	67.58	169.53	44.23	70.52	13.37	84.07	37.08
41	ER13a	ExonRegion	0	42.32	134.19	25.74	53.25	18.50	72.37	28.51
42	E13a_E14a	KnownJunction	0	47.33	118.85	33.70	57.62	19.96	76.33	28.99
43	ER14a	ExonRegion	0	55.16	144.00	36.72	52.06	24.86	89.17	32.00
44	E14a_E15a	KnownJunction	0	82.68	218.87	43.90	84.85	16.16	117.01	41.13
45	ER15a	ExonRegion	0	76.55	242.63	63.09	73.62	39.06	120.27	47.90
46	E15a_E16a	KnownJunction	0	82.72	204.97	66.12	62.53	49.72	108.70	45.83
47	E15a_E17a	NovelJunction	0	2.49	23.20	2.40	8.21	0.00	15.33	4.40
48	ER16a	ExonRegion	0	79.38	215.80	74.30	66.06	47.17	101.13	54.27
49	E16a_E17a	KnownJunction	0	112.12	267.08	87.54	96.42	25.54	123.84	66.94
50	ER17a	ExonRegion	0	67.29	233.05	56.96	77.14	27.02	109.67	41.79
51	E17a_E18a	KnownJunction	0	92.75	310.24	85.69	108.66	21.42	157.31	72.62
52	ER18a	ExonRegion	0	46.96	128.71	36.76	45.75	33.30	68.15	26.53
53	E18a_E19a	KnownJunction	0	3.04	8.22	1.37	3.28	0.00	5.95	0.00
54	ER19a	ExonRegion	0	48.12	133.81	29.38	46.58	18.32	79.10	19.68
55	E19a_E20a	KnownJunction	0	70.18	215.58	49.87	82.82	15.88	113.79	35.51
56	ER20a	ExonRegion	0	64.58	211.75	49.89	64.21	32.38	108.62	40.56
57	E20a_E21a	KnownJunction	0	57.75	196.04	50.30	51.64	31.61	97.42	31.21
58	ER21a	ExonRegion	0	69.31	177.19	45.54	61.67	36.98	112.82	34.99
59	E21a_E22a	KnownJunction	0	112.99	206.55	77.41	81.60	73.17	183.85	74.06
60	ER22a	ExonRegion	0	103.52	238.14	88.52	96.71	56.14	210.46	73.79
61	E22a_E23a	KnownJunction	0	94.40	263.95	79.22	94.93	48.64	186.55	72.00
62	ER23a	ExonRegion	0	88.96	294.87	76.97	113.74	52.52	203.39	74.31
63	E23a_E24a	KnownJunction	0	106.36	311.74	85.81	105.79	76.58	204.75	75.68
64	ER24a	ExonRegion	0	102.61	286.33	89.09	109.54	90.64	171.35	89.38
65	E24_Da	NovelBoundary	1	20.88	20.20	3.45	0.00	1.08	1.63	3.45
66	E24a_E25a	KnownJunction	0	72.72	198.82	63.66	77.86	111.51	90.34	70.30
67	E24a_E26a	NovelJunction	1	23.47	66.60	14.21	58.14	0.00	97.90	2.26
68	E25_Aa	NovelBoundary	1	19.31	18.60	4.37	7.61	6.66	25.30	2.88
69	ER25a	ExonRegion	0	101.20	217.65	88.16	82.97	99.66	127.90	84.37
70	E25a_E26a	KnownJunction	0	141.35	225.23	115.05	88.29	31.81	132.23	98.89
71	E26_Aa	NovelBoundary	1	48.77	44.74	9.05	15.14	0.88	10.93	1.59
72	ER26a	ExonRegion	0	74.83	248.19	55.34	109.91	36.12	155.88	53.81
73	E26a_E27a	KnownJunction	0	17.27	188.29	10.04	48.93	8.60	119.45	9.29
74	E26a_E28a	NovelJunction	0	0.00	2.36	1.98	4.66	0.99	9.65	2.91
75	ER27a	ExonRegion	0	76.60	133.63	40.73	57.74	50.44	91.61	35.84
76	E27a_E28a	KnownJunction	0	12.85	27.40	10.48	13.65	1.01	15.44	7.04
77	ER28a	ExonRegion	0	26.52	81.55	16.80	29.88	11.17	47.14	11.38
78	E28a_E29a	KnownJunction	0	33.30	113.99	21.18	46.24	10.72	69.22	10.30
79	ER29a	ExonRegion	0	53.54	183.74	36.32	60.75	20.23	107.83	21.59
80	E29a_E30a	KnownJunction	0	53.89	160.75	44.15	58.11	19.62	109.58	29.78
81	E29a_E31a	NovelJunction	0	0.00	10.82	1.51	5.77	0.00	12.03	2.29
82	ER30a	ExonRegion	0	60.28	174.65	44.51	55.68	25.33	102.27	29.09
83	E30a_E31a	KnownJunction	0	65.21	169.24	41.47	53.23	27.71	84.79	27.39
84	ER31a	ExonRegion	0	64.90	151.84	48.50	61.52	33.76	117.08	30.05
85	E31a_E32a	KnownJunction	0	87.71	206.55	70.44	74.66	55.12	177.47	50.49
86	ER32a	ExonRegion	0	70.31	222.98	44.15	82.94	36.73	156.84	38.75
87	E32a_E33a	KnownJunction	0	111.77	284.62	82.92	104.03	89.17	227.93	72.22
88	ER33a	ExonRegion	0	86.93	205.99	49.74	78.08	48.77	152.28	42.84
89	E33a_E34a	KnownJunction	0	94.23	195.67	46.43	81.57	40.99	167.15	40.63
90	ER34a	ExonRegion	0	80.18	175.71	46.09	80.57	45.10	165.11	41.94
91	E34a_E35a	KnownJunction	0	74.00	163.51	48.99	58.90	24.74	127.54	43.14
92	ER35a	ExonRegion	0	75.40	186.27	40.57	76.52	36.27	147.71	41.50
93	E35a_E36a	KnownJunction	0	97.12	242.67	57.38	81.73	40.83	172.59	49.63
94	ER36a	ExonRegion	0	113.58	253.11	62.36	89.99	40.65	176.26	48.62
95	E36a_E37a	KnownJunction	0	110.45	246.06	54.55	93.30	49.24	186.20	46.03
96	ER37a	ExonRegion	0	82.77	231.86	57.19	101.00	37.67	159.94	42.82
97	E37_Da	NovelBoundary	1	25.22	12.43	10.71	1.30	1.01	1.61	0.00
98	E37a_E38a	KnownJunction	0	57.50	231.35	58.52	91.81	32.60	171.12	47.90
99	E38_Ab	NovelBoundary	0	62.62	173.00	48.26	79.73	37.09	163.96	39.83
100	ER38a	ExonRegion	0	66.45	225.96	62.32	97.05	38.84	183.69	46.22
101	ER38b	ExonRegion	0	65.29	211.74	41.77	85.40	33.61	156.87	36.78
102	E38a_E39a	KnownJunction	0	67.56	204.34	40.73	99.70	37.94	143.49	27.89
103	ER39a	ExonRegion	0	50.79	208.05	36.03	77.26	29.13	140.67	31.76
104	E39a_E40a	KnownJunction	0	58.62	231.66	34.80	80.30	47.83	156.64	20.98
105	I39_AR2	ActiveIntronRegion	0	17.44	24.90	6.63	1.44	3.50	10.53	3.31
106	E40_Aa	NovelBoundary	1	27.94	19.76	15.68	0.00	2.19	6.75	0.53
107	ER40a	ExonRegion	0	57.86	204.84	29.69	80.09	33.87	158.01	28.99
108	E40a_E41a	KnownJunction	0	101.27	240.04	47.15	95.88	43.98	181.27	40.90
109	ER41a	ExonRegion	0	55.34	198.41	25.22	75.53	34.41	170.12	26.40
110	E41_Ab	KnownBoundary	0	46.13	228.88	18.01	86.23	13.99	191.06	27.01
111	ER41b	ExonRegion	0	32.21	135.54	16.66	45.50	18.17	124.15	16.00
112	ER41c	ExonRegion	0	8.94	25.85	4.99	8.73	4.57	23.24	1.94