Order SeqName SeqType IsAE Lum_Epi Lum_Epi2 Myo_Epi Myo_Epi2 hESCs StemLike vHMECs 1 CTTN Gene 0 349.19 453.98 159.58 200.13 331.74 156.69 610.28 2 376561 Transcript 0 2.33 4.98 1.22 9.43 3.04 2.45 6.59 3 301843 Transcript 0 403.90 544.83 264.21 212.57 396.15 202.61 783.08 4 346329 Transcript 0 7.34 2.56 3.16 0.55 9.90 1.36 6.45 5 393747 Transcript 0 96.02 92.30 54.35 47.62 70.55 27.97 115.63 6 IG34_AR1 ActiveIntergenicRegion 0 3.60 3.88 4.52 7.08 7.66 3.27 4.08 7 ER1a ExonRegion 0 297.41 437.24 112.23 153.02 191.77 107.51 374.77 8 E1a_E2a KnownJunction 0 519.99 725.56 195.95 265.06 299.73 179.88 636.44 9 ER2a ExonRegion 0 274.39 726.15 123.42 220.40 105.16 172.87 381.67 10 E2a_E3a KnownJunction 0 477.98 896.09 220.93 302.82 99.86 236.83 600.29 11 ER3a ExonRegion 0 733.51 908.11 300.07 327.45 310.91 260.50 857.95 12 E3a_E4a KnownJunction 0 530.01 843.79 251.75 298.22 671.32 247.28 796.73 13 ER4a ExonRegion 0 367.20 817.76 221.14 276.32 507.92 277.16 765.78 14 E4_Da NovelBoundary 1 31.14 351.70 19.24 41.45 3.16 38.91 17.41 15 E4a_E5a KnownJunction 0 278.59 778.74 201.53 292.39 374.01 277.97 782.15 16 I4_SR2 SilentIntronRegion 0 70.26 58.79 42.10 25.13 10.66 16.14 11.79 17 E5_Aa NovelBoundary 1 79.71 102.41 49.92 27.69 11.60 23.77 20.57 18 ER5a ExonRegion 0 421.55 937.39 277.24 405.24 391.81 325.53 1003.12 19 E5a_E6a KnownJunction 0 504.87 986.44 311.91 450.17 560.62 326.90 1149.61 20 ER6a ExonRegion 0 494.04 1046.46 334.89 460.08 527.44 360.07 1296.62 21 E6a_E7a KnownJunction 0 501.43 931.19 309.24 473.34 514.52 355.39 1305.92 22 ER7a ExonRegion 0 479.94 911.94 285.03 435.62 484.62 313.50 1155.32 23 E7a_E8a KnownJunction 0 396.22 791.69 214.62 350.15 514.86 233.85 838.09 24 E7a_E9a NovelJunction 0 7.29 15.32 4.84 13.14 4.50 12.54 19.98 25 ER8a ExonRegion 0 607.92 886.54 323.37 425.94 613.04 317.25 1256.49 26 E8a_E9a KnownJunction 0 681.53 985.57 395.56 505.82 783.01 356.97 1516.88 27 ER9a ExonRegion 0 679.37 921.76 396.86 422.28 572.17 307.78 1251.19 28 E9_Da NovelBoundary 0 73.94 89.85 56.09 39.23 48.92 21.15 48.77 29 E9a_E10a KnownJunction 0 721.99 817.78 364.35 399.13 532.84 330.82 1214.56 30 E9a_E12b NovelJunction 1 0.83 17.55 2.97 8.72 5.33 3.89 30.27 31 I9 Intron 0 70.12 82.66 38.19 29.98 43.87 20.37 63.15 32 I9_AR1 ActiveIntronRegion 0 70.36 82.95 38.32 30.08 44.01 20.45 63.38 33 E10_Aa NovelBoundary 0 102.28 102.14 51.22 39.04 69.23 23.93 113.23 34 ER10a ExonRegion 0 842.46 867.42 467.33 378.81 697.87 341.91 1350.35 35 E10a_E11a KnownJunction 0 489.18 594.47 335.69 233.36 473.37 256.88 829.16 36 E10a_E12b KnownJunction 0 175.80 182.32 88.72 73.69 139.72 69.25 263.14 37 I10_SR1 SilentIntronRegion 0 49.16 49.29 33.36 18.76 20.38 6.21 43.78 38 I10_AR2 ActiveIntronRegion 0 95.25 56.10 33.56 14.03 28.89 11.14 36.07 39 E11_Aa NovelBoundary 1 159.39 92.24 45.57 25.52 34.97 24.39 57.66 40 ER11a ExonRegion 0 452.89 575.34 279.77 244.94 413.72 210.57 863.87 41 E11_Da NovelBoundary 0 155.98 89.74 58.57 28.77 76.86 52.45 108.92 42 E11a_E12b KnownJunction 0 269.64 464.69 177.17 159.40 301.35 140.38 656.22 43 I11 Intron 0 68.50 78.06 39.54 28.11 42.77 18.76 78.98 44 I11_AR1 ActiveIntronRegion 0 68.79 78.39 39.71 28.23 42.95 18.84 79.31 45 E12_Aa NovelBoundary 0 101.06 95.60 66.26 26.20 48.78 14.87 123.75 46 ER12a ExonRegion 0 96.02 92.30 54.35 47.62 70.55 27.97 115.63 47 E12_Ab KnownBoundary 0 92.10 108.61 53.82 56.54 69.07 31.03 119.68 48 ER12b ExonRegion 0 492.06 789.02 292.96 351.17 534.55 270.88 1112.93 49 E12a_E13a KnownJunction 0 402.69 667.90 247.96 371.31 563.71 262.99 1057.33 50 ER13a ExonRegion 0 518.64 808.83 289.65 401.41 535.81 292.31 1352.91 51 E13a_E14a KnownJunction 0 497.51 785.94 266.67 371.01 501.10 301.04 1289.53 52 ER14a ExonRegion 0 278.19 625.42 160.70 281.05 323.35 218.13 855.95 53 E14a_E15a KnownJunction 1 245.19 558.74 152.38 267.12 325.99 178.73 928.03 54 ER15a ExonRegion 0 197.06 459.59 110.10 195.59 262.30 142.82 608.99 55 E15a_E16a KnownJunction 0 204.28 411.83 100.42 189.07 180.41 133.49 553.91 56 ER16a ExonRegion 0 187.90 424.57 100.89 171.03 204.80 124.91 548.02 57 E16a_E17a KnownJunction 0 227.18 405.87 123.08 168.53 215.94 131.48 551.33 58 ER17a ExonRegion 0 256.09 417.69 137.02 192.67 305.94 141.14 691.44 59 E17a_E18a KnownJunction 0 214.75 343.66 102.96 161.98 225.41 146.35 494.85 60 ER18a ExonRegion 0 203.84 307.22 83.33 133.70 183.98 116.57 372.81 61 E18_Da KnownBoundary 0 168.20 263.53 59.71 93.14 128.24 86.72 305.66 62 E18a_E18b KnownJunction 0 3.12 7.28 1.32 16.20 6.09 4.90 12.30 63 ER18b ExonRegion 0 200.52 184.06 77.64 68.65 228.84 61.58 329.72 64 E18_Ab KnownBoundary 0 408.69 255.07 142.86 87.75 307.39 97.85 685.73 65 ER18c ExonRegion 0 419.37 373.65 129.00 160.89 477.14 112.95 658.34 66 E18_Db KnownBoundary 0 711.64 505.80 198.37 220.03 546.44 142.49 862.58 67 E18b_E18c KnownJunction 0 1.54 2.68 1.12 2.65 0.00 0.00 0.89 68 ER18d ExonRegion 0 549.77 446.82 157.47 218.95 568.19 171.66 735.59 69 E18_Ac KnownBoundary 0 555.66 404.97 142.64 208.17 521.78 143.24 579.26 70 ER18e ExonRegion 0 489.54 461.11 156.67 236.40 372.67 202.55 541.29 71 E18_Dc KnownBoundary 0 410.79 530.60 166.60 244.85 253.24 233.05 475.37 72 ER18f ExonRegion 0 254.06 267.80 102.11 135.79 196.90 131.40 291.42 73 ER18g ExonRegion 0 7.34 2.56 3.16 0.55 9.90 1.36 6.45