Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CHRDL2	Gene	0	14.90	8.49	0.82	0.95	1.82	3.66	0.00
2	393519	Transcript	0	0.11	0.03	0.00	0.01	0.02	0.50	0.00
3	263671	Transcript	0	0	0	0	0	0	0	0
4	376331	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	376332	Transcript	0	2.80	4.23	0.00	1.11	0.00	1.34	0.00
6	376324	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	376323	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	ER1a	ExonRegion	0	12.33	10.45	0.82	0.50	0.84	4.58	0.00
9	E1a_E2b	KnownJunction	0	10.66	4.41	0.00	1.11	1.01	3.62	0.00
10	ER2a	ExonRegion	0	0.50	0.26	0.00	0.05	0.04	0.21	0.00
11	ER2b	ExonRegion	0	14.22	11.07	0.19	0.60	2.08	5.33	0.00
12	E2a_E3a	KnownJunction	0	16.67	13.95	0.85	1.68	4.91	4.53	0.00
13	E2a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	ER3a	ExonRegion	0	11.34	12.24	0.87	0.41	2.35	6.17	0.00
15	E3a_E4a	KnownJunction	0	9.63	14.08	0.00	0.00	2.19	4.64	0.00
16	ER4a	ExonRegion	0	17.24	11.92	0.24	0.00	3.28	4.08	0.00
17	E4a_E5a	KnownJunction	0	17.47	10.98	1.61	0.00	5.16	2.71	0.00
18	E4a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	ER5a	ExonRegion	0	13.70	6.95	0.97	0.00	2.83	2.33	0.00
20	E5a_E6a	KnownJunction	0	11.97	3.18	0.89	0.00	2.17	3.14	0.00
21	E5a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	ER6a	ExonRegion	0	18.22	4.25	0.52	0.42	2.30	4.25	0.00
23	E6a_E7b	KnownJunction	0	17.76	6.88	0.00	1.35	4.93	2.79	0.00
24	ER7a	ExonRegion	0	0.34	0.10	0.00	0.02	0.06	1.50	0.00
25	E7_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	4.05	0.00
26	ER7b	ExonRegion	0	12.06	9.89	0.31	2.08	1.75	3.83	0.00
27	E7a_E8a	KnownJunction	0	15.09	12.95	0.00	3.36	5.37	1.53	0.00
28	E7a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	ER8a	ExonRegion	0	12.66	9.05	0.18	1.00	1.57	3.24	0.00
30	E8a_E9a	KnownJunction	0	9.91	9.14	0.00	1.30	3.18	5.15	0.00
31	ER9a	ExonRegion	0	23.83	9.35	1.09	0.63	2.35	3.57	0.00
32	E9a_E10a	KnownJunction	0	22.36	7.15	0.00	0.00	2.14	2.65	0.00
33	E9a_E11a	KnownJunction	0	2.80	4.23	0.00	1.11	0.00	1.34	0.00
34	E9a_E12b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	E10_Aa	NovelBoundary	0	159.17	176.15	256.90	194.49	24.00	60.65	83.37
36	ER10a	ExonRegion	0	15.59	4.99	0.25	0.00	1.47	3.01	0.00
37	E10a_E11a	KnownJunction	0	6.83	2.65	1.18	0.00	1.89	3.11	0.00
38	ER11a	ExonRegion	0	37.36	7.01	1.87	6.26	3.71	4.42	0.00
39	E11a_E12a	KnownJunction	0	22.33	4.97	0.00	2.68	1.87	0.00	0.00
40	ER12a	ExonRegion	0	20.21	3.89	0.68	3.37	2.92	0.00	0.00
41	ER12b	ExonRegion	0	12.94	2.61	1.79	1.82	1.62	0.05	0.00
42	E12_Da	KnownBoundary	0	4.01	2.65	2.11	0.00	1.11	0.00	0.00
43	ER12c	ExonRegion	0	8.25	2.75	4.19	0.00	0.70	1.13	0.00