Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CTNND1	Gene	0	615.04	636.13	373.25	477.66	563.83	276.76	611.52
2	358694	Transcript	0	0.09	0.00	0.30	0.42	1.08	0.14	0.75
3	399039	Transcript	0	0.60	0.27	0.08	0.00	0.00	0.00	0.00
4	361796	Transcript	0	922.89	933.00	750.66	722.22	1168.25	368.12	1248.21
5	361332	Transcript	1	126.19	28.22	3.55	3.36	0.97	8.66	1.78
6	360682	Transcript	0	0	0	0	0	0	0	0
7	399050	Transcript	0	472.99	603.80	346.10	488.83	479.82	179.99	629.02
8	361391	Transcript	0	0	0	0	0	0	0	0
9	IG48	Intergenic	0	4.02	8.13	5.41	7.41	7.51	8.86	8.49
10	IG48_AR1	ActiveIntergenicRegion	0	22.45	45.65	27.57	36.50	74.01	50.02	45.79
11	IG48_AR2	ActiveIntergenicRegion	0	4.55	6.93	7.95	4.76	17.76	2.72	8.20
12	IG48_AR3	ActiveIntergenicRegion	0	2.31	6.07	3.58	2.49	7.87	1.23	4.91
13	IG48_SR1	SilentIntergenicRegion	0	2.52	4.16	8.58	8.71	3.85	9.65	10.92
14	IG48_AR7	ActiveIntergenicRegion	0	4.52	7.31	4.55	7.36	2.06	9.23	6.17
15	IG48_AR8	ActiveIntergenicRegion	0	6.07	5.45	5.30	5.83	2.73	10.46	6.55
16	IG48_AR9	ActiveIntergenicRegion	0	2.31	2.43	2.48	3.95	0.00	8.58	2.70
17	IG48_SR5	SilentIntergenicRegion	0	1.21	4.02	1.83	4.25	0.55	9.36	3.85
18	IG48_AR10	ActiveIntergenicRegion	0	4.73	7.73	1.95	5.64	0.74	7.12	4.03
19	ER1a	ExonRegion	1	299.93	232.52	141.81	159.49	153.20	80.34	142.21
20	E1a_E2a	KnownJunction	0	43.08	14.40	32.98	9.62	36.17	3.86	1.42
21	E1a_E3a	NovelJunction	1	29.17	23.17	7.70	9.13	3.53	1.58	3.54
22	E1a_E4a	NovelJunction	1	164.63	41.06	40.52	13.36	88.64	9.06	87.54
23	ER2a	ExonRegion	1	83.29	56.50	98.58	147.03	288.72	137.79	15.87
24	E2a_E3a	KnownJunction	1	22.06	58.80	58.21	129.52	134.58	136.57	2.26
25	ER3a	ExonRegion	0	121.90	161.74	73.46	217.04	123.97	148.57	45.43
26	E3a_E4a	KnownJunction	1	192.28	201.32	106.25	226.21	110.10	134.16	36.34
27	E3a_E5a	NovelJunction	0	2.47	25.27	10.29	42.86	12.82	45.56	1.53
28	ER4a	ExonRegion	1	646.27	334.07	297.57	326.98	478.55	170.72	296.93
29	E4a_E5a	KnownJunction	0	749.76	407.52	357.32	295.40	388.39	165.01	431.33
30	ER5a	ExonRegion	0	489.78	551.28	243.88	394.19	370.30	221.23	401.40
31	E5a_E6a	KnownJunction	0	521.01	723.10	277.39	455.00	510.78	253.63	513.08
32	ER6a	ExonRegion	0	481.33	785.13	280.83	518.96	476.41	235.90	602.52
33	E6a_E7a	KnownJunction	0	371.45	693.09	248.81	463.56	351.14	175.70	561.91
34	E7_Aa	NovelBoundary	1	167.33	35.02	109.89	13.30	16.67	2.95	12.01
35	ER7a	ExonRegion	0	529.48	904.04	373.65	645.92	619.93	251.75	771.78
36	E7a_E8a	KnownJunction	0	639.88	883.67	479.14	736.25	746.36	243.07	826.31
37	ER8a	ExonRegion	0	705.89	960.36	476.53	715.21	766.05	271.37	913.56
38	E8a_E9a	KnownJunction	0	598.10	872.53	411.65	679.26	658.92	254.57	796.87
39	ER9a	ExonRegion	0	605.68	875.16	412.80	659.62	663.24	262.69	845.01
40	E9a_E10a	KnownJunction	0	559.61	765.94	399.08	572.35	679.14	248.92	728.32
41	ER10a	ExonRegion	0	516.28	728.48	349.66	544.13	607.51	212.30	686.39
42	E10a_E11a	KnownJunction	0	1.03	0.00	2.87	7.94	46.04	1.61	0.79
43	E10a_E12a	KnownJunction	0	472.99	603.80	346.10	488.83	479.82	179.99	629.02
44	E11a_E12a	KnownJunction	1	0.00	0.00	1.24	14.55	75.59	1.66	1.43
45	ER11a	ExonRegion	0	1.54	2.02	3.88	17.73	82.60	2.45	1.87
46	ER12a	ExonRegion	0	633.41	759.69	443.52	596.86	627.92	242.57	710.23
47	E12a_E13a	KnownJunction	0	704.60	858.58	464.52	657.01	639.74	281.18	728.15
48	ER13a	ExonRegion	0	584.86	779.63	398.58	576.99	637.18	255.52	719.44
49	E13a_E14a	KnownJunction	0	575.82	723.49	416.98	551.47	647.16	244.20	687.99
50	ER14a	ExonRegion	0	642.75	868.09	442.53	644.89	662.64	279.28	867.80
51	E14a_E15a	KnownJunction	0	728.13	878.86	462.15	654.09	703.99	300.96	885.54
52	ER15a	ExonRegion	0	581.41	793.09	473.72	578.46	604.75	290.26	862.85
53	E15a_E16a	KnownJunction	0	602.69	635.56	473.83	506.28	501.49	290.51	756.74
54	ER16a	ExonRegion	0	690.00	708.76	523.46	519.13	643.40	261.11	755.08
55	E16a_E17a	KnownJunction	0	853.41	717.87	687.48	540.12	923.15	268.77	952.55
56	E16a_E18a	NovelJunction	0	5.51	11.93	8.84	6.56	0.00	13.56	2.31
57	ER17a	ExonRegion	0	770.98	823.22	636.98	622.91	820.70	316.24	989.80
58	E17a_E18a	KnownJunction	0	849.92	803.22	637.40	608.66	724.67	267.27	955.02
59	E17a_E19a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
60	E17a_E19b	NovelJunction	0	11.60	70.54	21.61	47.33	18.88	35.46	8.73
61	ER18a	ExonRegion	0	1100.39	861.08	797.33	670.96	1055.31	309.28	1149.53
62	E18a_E19b	KnownJunction	0	1117.62	821.74	777.67	667.63	1223.60	326.23	1086.09
63	ER19a	ExonRegion	0	297.00	268.48	218.79	207.62	306.93	105.74	296.65
64	ER19b	ExonRegion	0	967.50	918.90	711.94	652.03	1219.61	352.59	1171.54
65	E19a_E22a	KnownJunction	1	90.84	28.22	5.59	2.55	0.00	3.16	1.99
66	E19a_E23a	KnownJunction	0	922.89	933.00	750.66	722.22	1168.25	368.12	1248.21
67	ER20a	ExonRegion	0	0.09	0.00	0.30	0.42	1.08	0.14	0.75
68	ER21a	ExonRegion	0	0.60	0.27	0.08	0.00	0.00	0.00	0.00
69	ER22a	ExonRegion	0	110.28	29.49	10.52	7.80	3.24	4.16	7.47
70	E22a_E23a	KnownJunction	1	126.19	28.22	3.55	3.36	0.97	8.66	1.78
71	ER23a	ExonRegion	0	766.19	637.03	430.73	487.13	638.17	351.01	654.99
72	ER24a	ExonRegion	0	0.51	0.40	0.34	0.42	0.00	0.00	0.11
73	IG49_AR1	ActiveIntergenicRegion	0	24.85	9.86	5.77	5.58	0.14	2.23	103.96
74	IG49_SR1	SilentIntergenicRegion	0	10.60	2.35	1.97	1.18	0.26	0.59	44.18
75	IG49_AR2	ActiveIntergenicRegion	0	12.37	7.17	4.47	3.31	0.00	2.57	69.35
76	IG49_AR3	ActiveIntergenicRegion	0	20.03	10.93	6.59	2.49	0.00	2.45	92.51
77	IG49_AR4	ActiveIntergenicRegion	0	16.20	8.71	6.55	2.60	0.00	3.68	93.94
78	IG49_SR2	SilentIntergenicRegion	0	16.04	8.77	5.12	4.45	0.00	2.67	88.58
79	IG49_AR5	ActiveIntergenicRegion	0	16.47	8.85	5.23	6.23	0.00	1.23	93.86
80	IG49_AR6	ActiveIntergenicRegion	0	15.75	9.23	4.67	6.86	0.00	1.23	97.07
81	IG49_AR7	ActiveIntergenicRegion	0	19.21	9.92	4.06	7.48	0.00	1.23	106.02
82	IG49_AR8	ActiveIntergenicRegion	0	17.55	10.12	4.06	7.69	0.00	1.23	105.80
83	IG49_AR9	ActiveIntergenicRegion	0	19.72	13.90	3.24	9.01	0.00	0.00	111.46
84	IG49_AR10	ActiveIntergenicRegion	0	22.03	12.55	4.06	9.98	0.00	0.00	113.11
85	IG49_SR3	SilentIntergenicRegion	0	20.61	18.55	6.87	8.18	0.18	5.20	155.27
86	IG49_AR11	ActiveIntergenicRegion	0	20.11	10.26	3.72	3.35	0.00	3.13	102.85