Order SeqName SeqType IsAE Lum_Epi Lum_Epi2 Myo_Epi Myo_Epi2 hESCs StemLike vHMECs 1 BSCL2 Gene 0 84.60 36.80 45.67 19.27 216.95 37.16 118.26 2 405837 Transcript 0 28.58 7.06 19.30 3.85 8.60 9.74 37.19 3 301781 Transcript 0 1.99 1.96 0.56 0.36 71.19 4.06 3.36 4 360796 Transcript 0 0 0 0 0 0 0 0 5 403098 Transcript 0 0.00 0.00 0.73 0.00 1.15 0.00 0.00 6 278893 Transcript 0 2.69 2.42 2.80 2.38 13.14 4.66 1.75 7 403734 Transcript 0 0 0 0 0 0 0 0 8 407022 Transcript 0 0 0 0 0 0 0 0 9 403550 Transcript 0 2.39 1.39 1.90 1.33 9.89 0.00 6.16 10 IG16 Intergenic 0 24.82 12.69 40.36 17.91 66.09 11.30 44.01 11 IG16_AR4 ActiveIntergenicRegion 0 46.21 23.86 83.11 36.00 137.52 22.37 82.86 12 IG16_SR3 SilentIntergenicRegion 0 14.08 2.82 8.67 4.18 3.36 2.58 11.95 13 IG16_SR2 SilentIntergenicRegion 0 6.73 1.92 3.06 2.32 2.63 1.33 9.46 14 IG16_AR3 ActiveIntergenicRegion 0 7.98 3.09 1.92 2.48 6.57 1.05 10.14 15 IG16_SR1 SilentIntergenicRegion 0 6.73 4.40 6.09 2.46 6.32 4.35 12.49 16 IG16_AR2 ActiveIntergenicRegion 0 1.98 4.86 2.77 3.62 4.74 2.45 12.75 17 IG16_AR1 ActiveIntergenicRegion 0 3.96 3.65 2.71 1.49 2.91 1.71 10.14 18 ER1a ExonRegion 0 31.01 4.83 18.73 6.23 10.93 13.17 42.11 19 E1a_E2c KnownJunction 0 26.15 9.30 19.87 1.46 6.27 6.30 32.26 20 ER2a ExonRegion 0 1.99 1.96 0.56 0.36 71.19 4.06 3.36 21 E2_Ab KnownBoundary 0 1.03 2.78 0.89 0.00 193.02 4.50 3.97 22 E2_Ac KnownBoundary 0 16.94 6.44 7.31 1.68 126.19 1.66 8.71 23 ER2b ExonRegion 0 7.52 5.18 2.30 1.30 206.30 5.17 9.62 24 ER2c ExonRegion 0 36.25 16.99 31.49 20.02 163.31 25.55 60.53 25 E2a_E4a KnownJunction 0 44.25 8.28 37.36 23.00 342.91 21.15 64.15 26 E2a_E6a NovelJunction 0 0.00 1.52 0.66 0.00 12.93 0.00 0.00 27 E3_Aa NovelBoundary 1 16.21 6.94 13.81 4.88 33.77 15.97 35.54 28 ER3a ExonRegion 0 0.63 5.25 0.52 1.50 6.57 2.52 7.28 29 E3_Ab KnownBoundary 0 4.62 15.55 1.87 5.93 16.39 5.87 20.68 30 E3_Da KnownBoundary 0 3.40 1.63 0.89 0.00 3.34 0.00 1.58 31 E3a_E4a KnownJunction 1 16.97 11.32 3.29 3.01 17.45 5.82 32.27 32 ER3b ExonRegion 0 11.53 11.25 1.81 2.57 20.61 3.84 20.02 33 ER3c ExonRegion 0 3.63 3.60 1.94 2.39 5.73 2.58 3.61 34 E3b_E4a KnownJunction 0 2.39 1.39 1.90 1.33 9.89 0.00 6.16 35 E3b_E5a KnownJunction 0 0.00 0.00 0.73 0.00 1.15 0.00 0.00 36 ER4a ExonRegion 0 80.85 49.11 61.36 26.15 309.20 46.24 144.62 37 E4a_E5a KnownJunction 0 139.19 50.49 84.81 30.02 492.55 70.97 180.79 38 ER5a ExonRegion 0 129.25 71.48 75.59 31.30 396.46 58.52 230.14 39 E5a_E6a KnownJunction 0 115.46 82.70 73.33 27.15 342.50 52.42 243.53 40 ER6a ExonRegion 0 173.09 87.64 95.58 33.04 485.43 74.51 292.29 41 E6a_E7a KnownJunction 0 187.44 70.75 96.40 39.34 599.03 68.42 350.96 42 ER7a ExonRegion 0 158.88 64.48 91.03 34.95 456.05 66.16 265.33 43 E7a_E8a KnownJunction 0 145.55 66.65 83.58 24.22 453.08 59.44 240.84 44 ER8a ExonRegion 0 156.82 64.08 81.16 46.53 457.60 60.01 251.18 45 E8a_E9a KnownJunction 0 139.58 49.31 72.30 20.64 403.93 37.28 181.02 46 E8a_E10a KnownJunction 0 2.69 2.42 2.80 2.38 13.14 4.66 1.75 47 E9_Aa NovelBoundary 1 46.63 1.52 22.82 0.00 3.09 2.84 2.01 48 ER9a ExonRegion 0 134.83 66.82 67.89 29.86 315.59 62.02 189.31 49 E9a_E10a KnownJunction 0 181.39 66.10 79.41 16.31 309.83 57.67 191.31 50 ER10a ExonRegion 0 146.08 55.01 74.91 29.59 347.49 69.61 187.89 51 E10a_E11a KnownJunction 0 4.57 0.00 5.36 0.00 16.60 1.31 5.57 52 E10a_E11b KnownJunction 0 92.33 40.27 59.31 30.88 250.93 60.11 153.49 53 ER11a ExonRegion 0 17.02 6.25 13.16 4.45 52.87 12.44 29.30 54 ER11b ExonRegion 0 94.63 51.97 57.91 23.83 233.55 52.38 147.58 55 E11a_E12a KnownJunction 0 123.34 56.77 61.51 22.81 363.08 44.49 135.46 56 ER12a ExonRegion 0 188.97 45.46 70.79 23.85 386.75 52.32 149.93 57 E12a_E13a KnownJunction 1 309.31 48.23 92.80 24.25 245.17 74.29 171.43 58 ER13a ExonRegion 0 143.60 49.43 47.55 17.56 203.04 47.97 100.49 59 ER13b ExonRegion 1 25.03 8.44 6.38 0.66 71.22 3.55 26.98 60 ER13c ExonRegion 0 3.84 3.64 0.68 0.00 12.96 0.00 8.10