Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	EML3	Gene	0	38.74	19.01	91.69	44.14	40.84	40.38	41.38
2	394773	Transcript	1	10.12	5.20	26.70	16.19	11.22	27.66	6.96
3	394776	Transcript	0	4.67	4.62	17.88	13.65	6.32	8.28	4.27
4	278845	Transcript	0	0	0	0	0	0	0	0
5	ER1a	ExonRegion	0	2.10	1.39	1.64	6.13	0.34	3.44	1.33
6	E1_Ab	KnownBoundary	1	2.84	1.10	4.89	7.40	2.33	13.59	2.06
7	E1_Ac	KnownBoundary	0	4.71	6.44	6.18	10.67	0.00	9.35	2.38
8	ER1b	ExonRegion	0	4.36	2.96	5.77	12.22	1.62	9.71	2.75
9	ER1c	ExonRegion	0	8.12	4.28	11.05	9.72	5.07	14.13	5.39
10	E1a_E2a	KnownJunction	0	13.52	4.76	27.49	16.09	9.04	20.39	11.92
11	I1	Intron	1	8.31	2.42	27.25	5.08	2.99	5.66	2.68
12	I1_AR1	ActiveIntronRegion	1	10.01	2.50	31.51	5.68	3.49	6.69	3.26
13	I1_SR2	SilentIntronRegion	1	4.87	4.39	23.69	3.56	1.44	2.78	2.09
14	ER2a	ExonRegion	0	17.75	16.26	48.38	34.66	10.03	46.12	17.41
15	E2a_E3a	KnownJunction	0	15.97	8.59	33.48	19.51	5.81	24.39	11.47
16	E2a_E3b	KnownJunction	1	18.14	9.01	51.76	26.25	22.11	51.88	12.60
17	ER3a	ExonRegion	0	19.40	10.63	43.35	26.81	10.53	35.55	15.68
18	ER3b	ExonRegion	0	30.13	18.21	84.58	44.46	22.29	49.25	30.31
19	E3a_E4a	KnownJunction	0	37.85	22.28	119.12	40.88	42.21	47.01	28.69
20	ER4a	ExonRegion	0	43.15	26.33	100.94	41.57	35.21	43.48	32.45
21	E4a_E5a	KnownJunction	1	44.26	18.78	83.03	38.93	31.12	42.77	23.25
22	ER5a	ExonRegion	0	51.47	17.45	105.19	47.84	29.90	46.53	44.27
23	E5a_E6a	KnownJunction	0	60.33	26.46	134.38	65.29	42.00	53.20	53.43
24	ER6a	ExonRegion	0	53.57	21.92	107.85	54.95	45.83	38.15	41.57
25	E6_Da	NovelBoundary	1	18.43	2.57	29.99	18.10	14.82	8.15	6.43
26	E6a_E7a	KnownJunction	1	43.93	20.10	100.28	38.69	44.86	23.37	22.19
27	I6	Intron	1	10.02	4.14	22.01	10.71	7.80	1.26	6.00
28	I6_SR1	SilentIntronRegion	1	10.48	4.27	23.01	11.18	8.21	1.34	6.25
29	E7_Aa	NovelBoundary	1	9.93	4.33	25.91	12.79	13.49	6.49	2.31
30	ER7a	ExonRegion	0	43.31	25.04	98.73	49.06	45.45	42.96	43.73
31	E7a_E8a	KnownJunction	0	34.28	27.51	102.49	40.45	41.77	42.02	40.60
32	ER8a	ExonRegion	0	42.21	20.60	118.80	42.41	49.99	46.03	52.72
33	E8a_E9a	KnownJunction	0	51.67	19.99	122.23	39.88	57.61	51.27	55.48
34	ER9a	ExonRegion	0	47.82	23.44	120.59	55.35	46.98	44.11	47.99
35	E9a_E10a	KnownJunction	0	44.03	19.02	112.89	52.96	47.83	34.95	42.92
36	ER10a	ExonRegion	0	53.72	19.58	130.59	52.02	62.84	43.94	59.41
37	E10a_E11a	KnownJunction	0	66.44	26.30	170.75	58.60	63.30	48.32	54.62
38	E10a_E12a	NovelJunction	1	0.78	0.00	11.01	5.45	0.00	8.84	1.65
39	ER11a	ExonRegion	0	65.31	28.42	159.88	62.59	63.46	44.25	61.63
40	E11a_E12a	KnownJunction	0	72.90	18.55	171.98	68.51	64.76	56.52	62.14
41	ER12a	ExonRegion	0	58.14	20.56	148.90	56.35	55.96	43.80	55.73
42	E12a_E13a	KnownJunction	0	42.11	20.31	113.07	59.76	43.98	35.00	46.46
43	ER13a	ExonRegion	0	30.05	16.08	71.39	44.89	38.77	31.36	37.88
44	E13a_E14a	KnownJunction	1	29.01	8.88	66.43	45.22	32.92	30.87	26.86
45	ER14a	ExonRegion	0	30.30	17.43	85.19	38.78	39.65	49.57	44.01
46	E14a_E15a	KnownJunction	0	37.94	24.38	103.06	53.04	57.36	53.92	68.27
47	ER15a	ExonRegion	0	35.32	25.94	87.45	39.99	52.21	53.10	48.15
48	E15_Da	NovelBoundary	0	7.44	14.00	20.71	11.27	8.41	14.20	3.90
49	E15a_E16a	KnownJunction	0	45.41	24.48	122.32	37.93	68.31	42.00	56.92
50	I15	Intron	0	10.08	2.40	19.57	5.33	4.28	2.43	5.32
51	I15_AR1	ActiveIntronRegion	0	10.12	2.40	19.65	5.35	4.30	2.44	5.34
52	E16_Aa	NovelBoundary	1	6.79	2.21	24.70	6.99	5.03	5.95	3.30
53	ER16a	ExonRegion	0	55.03	31.50	134.93	53.77	69.24	48.84	63.92
54	E16a_E17a	KnownJunction	0	61.89	30.24	125.04	65.07	78.79	46.52	72.03
55	ER17a	ExonRegion	0	73.68	33.98	185.79	73.12	94.13	64.52	87.39
56	E17a_E18a	KnownJunction	0	72.65	39.17	200.90	72.04	68.40	69.97	86.02
57	ER18a	ExonRegion	0	89.62	35.26	214.59	94.27	108.92	85.23	97.97
58	E18a_E19a	KnownJunction	0	110.14	36.15	258.03	125.81	104.52	89.65	116.56
59	ER19a	ExonRegion	0	97.91	36.16	249.38	101.22	109.12	75.51	96.09
60	E19a_E20a	KnownJunction	0	82.25	30.92	205.15	72.71	96.06	78.15	87.46
61	ER20a	ExonRegion	0	82.37	20.24	166.69	68.21	89.16	59.12	81.41
62	E20_Da	NovelBoundary	0	18.29	10.75	52.83	34.81	15.56	30.98	9.82
63	E20a_E21a	KnownJunction	0	54.43	14.13	79.99	20.72	76.74	23.16	62.01
64	E20a_E21b	KnownJunction	0	4.67	4.62	17.88	13.65	6.32	8.28	4.27
65	I20	Intron	0	12.46	5.33	25.33	21.12	7.30	14.72	3.14
66	I20_AR1	ActiveIntronRegion	0	12.55	5.37	25.52	21.27	7.35	14.83	3.16
67	E21_Aa	NovelBoundary	1	19.88	5.67	30.12	35.79	8.48	22.00	7.95
68	ER21a	ExonRegion	0	40.76	20.46	73.90	35.11	51.88	31.43	59.56
69	E21a_E22a	KnownJunction	0	26.45	13.58	41.31	46.22	16.37	47.97	37.36
70	ER21b	ExonRegion	0	31.93	17.49	60.15	48.63	20.41	47.63	37.20
71	ER22a	ExonRegion	0	12.45	10.40	22.14	26.02	14.92	23.29	18.26
72	ER22b	ExonRegion	0	3.07	1.21	2.03	8.19	0.69	1.93	1.93
73	IG7	Intergenic	0	3.55	3.30	5.90	9.76	4.89	8.13	2.76
74	IG7_AR1	ActiveIntergenicRegion	0	3.57	3.31	5.93	9.80	4.91	8.15	2.77