Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	C11orf9	Gene	0	2.72	5.57	1.08	2.55	17.55	10.13	1.26
2	278836	Transcript	0	0.20	1.18	0.13	0.01	6.99	2.46	0.22
3	265460	Transcript	0	1.12	2.36	0.21	0.83	7.05	3.24	1.04
4	327797	Transcript	0	0.04	1.01	0.15	0.42	0.25	0.27	0.06
5	389602	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	ER1a	ExonRegion	0	0.00	1.83	0.00	0.00	0.17	1.23	0.00
7	E1a_E3a	KnownJunction	0	0.00	4.07	0.00	0.00	1.18	1.10	0.00
8	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.06	0.00	0.00
9	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	ER3a	ExonRegion	0	0.00	3.49	0.00	0.00	2.46	2.91	0.00
11	E3a_E4a	KnownJunction	0	0.00	3.23	0.00	0.00	3.37	5.84	0.00
12	ER4a	ExonRegion	0	0.36	1.34	0.00	0.65	2.60	6.56	0.00
13	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	1.22	1.89	3.11	0.00
14	I4_SR1	SilentIntronRegion	0	0.35	0.53	0.31	3.61	1.51	7.96	0.00
15	I4_AR1	ActiveIntronRegion	0	0.77	3.64	0.00	6.46	0.44	28.76	0.00
16	I4_AR2	ActiveIntronRegion	0	0.77	3.64	0.00	7.48	0.58	32.93	0.00
17	I4_AR3	ActiveIntronRegion	0	0.77	1.21	0.00	7.07	1.62	28.20	0.00
18	I4_AR4	ActiveIntronRegion	0	1.48	0.21	0.00	7.48	1.45	21.94	0.00
19	ER5a	ExonRegion	0	0.04	1.33	0.00	0.28	3.20	1.13	0.00
20	E5a_E6a	KnownJunction	0	0.00	1.31	0.00	0.00	2.03	0.00	0.00
21	ER6a	ExonRegion	0	0.37	2.12	0.02	0.68	3.37	3.26	0.18
22	E6a_E7a	KnownJunction	0	1.49	4.73	0.55	0.00	3.11	5.63	0.00
23	ER7a	ExonRegion	0	0.51	2.80	0.44	0.57	6.17	7.78	0.20
24	E7a_E8a	KnownJunction	0	0.00	0.00	0.82	1.68	8.92	1.13	0.00
25	ER8a	ExonRegion	0	0.00	0.00	0.16	1.18	8.21	10.35	0.00
26	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	11.96	8.82	0.00
27	ER9a	ExonRegion	0	0.00	0.49	0.00	1.25	12.80	8.58	0.00
28	ER9b	ExonRegion	0	0.30	2.48	0.28	4.31	12.10	21.43	0.28
29	E9a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	E9b_E11a	KnownJunction	0	0.00	0.00	0.00	5.74	9.38	5.79	0.00
31	ER9c	ExonRegion	0	0.51	0.00	0.00	4.99	11.07	5.52	0.00
32	ER10a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
33	ER11a	ExonRegion	0	0.00	0.66	0.00	3.61	17.26	6.07	0.00
34	E11a_E12a	KnownJunction	0	0.00	1.63	0.00	3.25	9.57	4.64	0.00
35	ER12a	ExonRegion	0	1.15	1.74	0.00	1.93	12.40	8.20	0.22
36	E12_Ab	KnownBoundary	0	1.03	1.52	0.00	2.90	15.70	11.01	0.70
37	ER12b	ExonRegion	0	0.58	1.01	0.00	0.52	16.17	8.40	0.67
38	E12a_E13a	KnownJunction	0	0.00	2.10	0.00	1.44	18.93	2.97	0.00
39	E12a_E14a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	8.76	0.00
40	ER13a	ExonRegion	0	0.62	2.43	0.00	1.78	18.86	6.56	0.00
41	E13a_E14a	KnownJunction	0	0.00	1.55	0.00	0.00	23.74	1.66	0.00
42	ER14a	ExonRegion	0	0.29	3.86	0.00	1.30	13.73	10.02	0.10
43	E14a_E15a	KnownJunction	0	0.00	4.73	0.00	2.98	15.72	15.68	0.86
44	ER15a	ExonRegion	0	1.02	3.44	0.68	1.79	16.28	10.22	0.73
45	E15a_E16a	KnownJunction	0	2.75	4.36	1.39	1.11	19.43	11.95	1.38
46	ER16a	ExonRegion	0	2.47	3.55	0.74	2.00	19.70	12.43	1.15
47	E16_Da	KnownBoundary	0	1.75	4.78	0.86	2.60	14.55	11.52	1.49
48	E16b_E18a	KnownJunction	0	2.67	4.07	1.31	0.00	15.77	10.88	1.69
49	ER16b	ExonRegion	0	2.28	4.86	1.31	1.41	15.50	11.16	1.84
50	E16c_E17a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
51	ER16c	ExonRegion	0	0.00	0.00	0.00	0.00	0.81	0.31	0.00
52	ER17a	ExonRegion	0	0.00	0.00	0.00	0.00	0.01	1.23	0.00
53	E17_Da	NovelBoundary	0	3.45	4.81	0.00	4.90	0.00	30.58	0.00
54	E17a_E18b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
55	I17	Intron	0	0.77	1.58	0.29	3.27	0.83	9.87	0.29
56	I17_AR1	ActiveIntronRegion	0	0.78	1.59	0.29	3.29	0.83	9.92	0.30
57	E18_Ab	NovelBoundary	0	2.52	2.42	1.67	0.00	9.06	11.04	1.40
58	ER18a	ExonRegion	0	2.04	3.64	1.35	0.34	13.77	10.70	1.74
59	ER18b	ExonRegion	0	0.90	3.83	1.10	2.74	13.48	9.10	0.44
60	E18a_E19a	KnownJunction	0	1.44	1.63	0.00	0.00	10.35	3.43	0.00
61	ER19a	ExonRegion	0	1.26	6.39	1.40	0.27	13.05	9.82	1.32
62	E19a_E20a	KnownJunction	0	0.60	4.26	1.35	1.27	16.02	15.03	1.62
63	E19b_E20a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
64	ER19b	ExonRegion	0	0.00	2.43	0.56	0.21	0.13	0.00	0.11
65	ER20a	ExonRegion	0	2.24	6.73	0.94	2.98	24.25	15.43	1.30
66	E20a_E21a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
67	E20a_E21b	KnownJunction	0	2.69	9.38	0.00	0.00	26.72	8.31	0.60
68	ER21a	ExonRegion	0	0.36	6.65	0.77	3.56	1.30	0.87	0.47
69	E21_Ab	KnownBoundary	0	1.79	6.52	0.82	7.61	2.14	0.00	0.00
70	ER21b	ExonRegion	0	3.72	8.43	0.28	3.97	26.91	8.24	1.77
71	E21b_E22a	KnownJunction	0	0.00	0.00	0.00	0.00	17.54	0.00	0.00
72	E21b_E23a	KnownJunction	0	0.88	5.70	0.00	0.00	5.00	5.65	2.35
73	E21b_E23b	NovelJunction	0	0.00	2.13	0.62	0.00	8.88	2.97	0.87
74	ER21c	ExonRegion	0	1.54	7.29	0.00	0.83	27.00	7.36	2.70
75	ER22a	ExonRegion	0	0.13	1.14	0.64	0.00	10.45	0.82	0.01
76	E22a_E23b	KnownJunction	0	0.75	0.00	0.00	0.00	11.60	1.47	0.00
77	ER23a	ExonRegion	0	0.96	6.07	0.17	2.49	14.98	7.97	2.87
78	ER23b	ExonRegion	0	3.53	11.09	0.57	2.44	25.99	9.59	2.26
79	E23a_E24a	KnownJunction	0	4.94	14.37	0.00	1.57	18.95	11.95	0.89
80	ER24a	ExonRegion	0	4.01	10.15	0.81	3.28	28.63	13.52	1.19
81	E24a_E25a	KnownJunction	0	5.31	1.29	0.83	0.00	18.14	11.31	0.00
82	ER25a	ExonRegion	0	2.44	3.55	1.03	1.34	14.50	7.47	0.75
83	E25a_E26a	KnownJunction	0	0.00	0.00	0.00	0.00	3.20	7.34	0.75
84	E25a_E26b	KnownJunction	0	3.76	0.00	0.89	1.68	15.21	2.60	0.00
85	E26_Ab	NovelBoundary	0	0.58	7.51	3.08	1.68	4.98	3.97	0.00
86	ER26a	ExonRegion	0	0.53	1.21	0.25	0.08	4.81	5.29	0.80
87	ER26b	ExonRegion	0	6.43	6.88	0.98	1.99	28.84	9.68	1.78
88	E26a_E27a	KnownJunction	0	3.29	5.78	0.69	4.69	29.95	7.64	0.54
89	ER27a	ExonRegion	0	3.51	5.10	0.79	3.24	22.67	8.94	1.30
90	E27a_E28a	KnownJunction	0	5.44	6.99	0.89	2.82	20.40	3.73	0.00
91	ER28a	ExonRegion	0	5.68	9.84	1.41	3.62	14.61	11.21	0.20
92	E28a_E29a	KnownJunction	0	2.67	5.73	0.76	0.00	21.53	11.87	0.80
93	I28_SR1	SilentIntronRegion	0	1.54	3.64	0.68	8.51	1.62	1.23	1.64
94	ER29a	ExonRegion	0	1.20	6.61	1.10	2.38	20.44	9.19	0.46
95	E29a_E30a	KnownJunction	0	0.75	5.18	0.00	0.00	12.52	8.44	0.00
96	ER30a	ExonRegion	0	4.85	8.28	2.02	3.90	25.92	13.32	2.41