Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	AMBRA1	Gene	0	66.53	152.62	111.59	214.61	62.63	179.53	46.14
2	314823	Transcript	0	12.69	42.79	17.97	62.73	10.50	61.56	6.84
3	298834	Transcript	0	7.99	34.67	12.83	42.31	16.16	39.10	10.16
4	314845	Transcript	0	74.85	126.55	124.69	176.38	74.07	105.95	51.59
5	IG48_SR5	SilentIntergenicRegion	0	10.89	7.71	9.28	4.30	11.25	8.08	5.04
6	IG48_AR5	ActiveIntergenicRegion	0	18.98	11.46	9.23	3.92	11.51	5.35	6.74
7	IG48_AR4	ActiveIntergenicRegion	0	7.67	10.28	2.50	6.69	4.63	11.40	4.21
8	IG48_AR1	ActiveIntergenicRegion	0	0.00	0.88	9.33	0.90	0.00	7.08	0.18
9	ER1a	ExonRegion	0	17.93	71.66	27.61	94.35	12.14	97.52	11.32
10	E1a_E3a	KnownJunction	0	33.38	133.35	51.47	205.08	8.25	199.95	18.29
11	I1_SR1	SilentIntronRegion	1	14.20	17.85	27.42	13.11	2.79	6.26	12.58
12	ER2a	ExonRegion	0	7.44	0.77	9.29	1.16	3.43	0.39	2.75
13	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	ER3a	ExonRegion	0	54.59	185.67	111.65	223.09	41.75	234.58	39.04
15	E3a_E4a	KnownJunction	0	62.10	212.38	139.85	263.84	62.73	266.36	46.61
16	ER4a	ExonRegion	0	72.64	239.64	172.73	276.32	79.04	276.60	53.45
17	E4a_E5a	KnownJunction	0	77.39	215.71	172.92	270.15	79.44	275.13	55.76
18	ER5a	ExonRegion	0	97.81	343.12	214.55	389.15	89.07	336.03	78.64
19	E5a_E6a	KnownJunction	0	104.23	361.89	232.41	411.27	126.10	348.99	97.25
20	ER6a	ExonRegion	0	117.36	355.94	248.56	431.77	125.40	346.52	107.86
21	E6a_E7a	KnownJunction	0	106.08	358.45	236.64	414.01	114.13	346.41	114.41
22	ER7a	ExonRegion	0	122.75	330.71	244.66	426.18	104.50	356.66	120.55
23	E7a_E8a	KnownJunction	0	119.45	313.79	216.65	449.31	97.54	408.32	117.78
24	ER8a	ExonRegion	0	91.20	258.69	195.15	354.71	91.93	284.04	88.56
25	E8_Da	KnownBoundary	0	41.17	212.61	65.63	257.04	72.02	219.68	55.29
26	E8a_E8b	KnownJunction	0	46.33	55.59	103.34	104.95	46.15	75.87	40.10
27	ER8b	ExonRegion	0	12.40	66.76	15.74	81.54	21.63	76.83	16.07
28	E8_Ab	KnownBoundary	0	12.47	55.04	11.34	63.61	17.34	61.72	17.37
29	ER8c	ExonRegion	0	97.36	175.87	156.80	245.60	77.32	195.43	57.59
30	E8b_E9a	KnownJunction	0	0.00	3.05	1.77	4.01	0.00	3.11	0.00
31	E8b_E11a	KnownJunction	0	45.08	32.02	73.35	61.63	45.07	45.61	27.53
32	E8b_E12a	NovelJunction	0	39.40	132.12	85.42	210.88	26.26	153.62	25.88
33	E8b_E13a	NovelJunction	0	4.11	23.75	10.40	25.19	10.05	45.69	6.00
34	E8b_E15a	NovelJunction	0	0.00	6.75	0.00	9.16	0.00	5.23	0.00
35	E9_Aa	NovelBoundary	1	651.58	1168.76	623.79	1187.81	405.59	2741.70	406.58
36	ER9a	ExonRegion	0	9.93	4.67	5.88	10.22	23.87	7.20	3.91
37	E9_Da	NovelBoundary	0	21484.76	15064.33	14035.52	13211.49	9130.12	12552.90	10984.25
38	ER10a	ExonRegion	0	2.23	1.21	3.12	0.00	8.26	0.00	0.67
39	I10_AR1	ActiveIntronRegion	0	16.87	2.41	14.58	2.55	2.07	3.45	1.72
40	I10_AR5	ActiveIntronRegion	0	22.04	8.50	16.05	5.07	3.39	1.23	7.13
41	ER11a	ExonRegion	0	75.80	50.37	113.94	94.70	58.04	56.97	44.98
42	E11_Da	NovelBoundary	1	19.69	0.00	8.00	0.00	0.88	1.15	0.62
43	E11a_E12a	KnownJunction	0	66.64	43.58	85.04	67.40	42.69	52.96	31.62
44	E11a_E13a	KnownJunction	0	3.57	2.57	9.92	3.09	10.70	1.37	4.26
45	I11_AR1	ActiveIntronRegion	0	20.06	3.32	14.57	2.05	4.89	3.10	4.16
46	ER12a	ExonRegion	0	82.71	151.07	126.52	212.30	75.42	131.28	60.06
47	E12a_E13a	KnownJunction	0	75.19	185.00	162.51	249.43	104.08	133.62	63.09
48	ER13a	ExonRegion	0	90.13	200.69	162.67	310.66	96.46	187.85	79.59
49	E13a_E14a	KnownJunction	0	93.93	207.26	166.60	339.02	88.20	197.35	75.15
50	ER14a	ExonRegion	0	88.88	195.09	155.60	283.68	107.61	170.46	68.71
51	E14a_E15a	KnownJunction	0	60.13	199.98	135.71	273.51	83.82	165.46	71.20
52	I14_AR3	ActiveIntronRegion	0	16.80	5.24	13.83	1.53	5.37	2.48	9.17
53	I14_AR4	ActiveIntronRegion	1	20.64	5.73	10.55	0.00	1.97	2.80	2.12
54	I14_SR3	SilentIntronRegion	0	16.88	3.87	10.34	1.43	5.29	4.13	4.64
55	I14_AR5	ActiveIntronRegion	0	19.25	2.77	15.85	7.84	4.29	3.85	4.45
56	I14_SR6	SilentIntronRegion	0	16.25	3.68	10.35	1.97	3.51	2.23	4.57
57	ER15a	ExonRegion	0	71.93	204.89	157.97	307.82	100.28	197.01	65.73
58	E15a_E16a	KnownJunction	0	91.86	212.38	153.53	284.02	76.84	184.73	57.24
59	ER16a	ExonRegion	0	93.95	201.39	164.15	287.56	98.68	203.10	64.53
60	E16a_E17a	KnownJunction	0	65.67	148.91	119.82	224.59	74.09	172.97	46.78
61	E16a_E18a	NovelJunction	1	22.71	13.29	14.53	23.14	3.07	22.73	2.14
62	ER17a	ExonRegion	0	62.44	162.19	131.97	264.12	85.35	179.22	54.91
63	E17a_E18a	KnownJunction	0	42.61	157.34	106.86	219.71	90.04	175.78	48.74
64	I17_AR5	ActiveIntronRegion	0	6.41	5.85	10.49	5.37	47.31	2.42	2.52
65	I17_SR4	SilentIntronRegion	0	18.68	10.73	20.60	18.90	133.86	10.53	10.79
66	I17_AR6	ActiveIntronRegion	1	30.45	15.67	41.34	34.26	110.44	19.43	23.16
67	ER18a	ExonRegion	0	57.15	161.21	109.19	253.68	77.59	199.80	51.41
68	E18a_E19a	KnownJunction	0	70.97	173.97	103.71	242.41	79.65	190.73	33.01
69	E18a_E20a	NovelJunction	0	0.75	7.04	3.06	9.89	0.97	5.36	2.51
70	ER19a	ExonRegion	0	61.12	173.05	104.43	254.64	59.97	204.27	44.05
71	E19a_E20a	KnownJunction	0	55.06	164.22	108.40	247.64	51.15	196.90	53.44
72	ER20a	ExonRegion	0	63.13	165.80	93.61	250.61	52.13	190.54	48.20
73	E20a_E21a	KnownJunction	0	53.91	153.85	87.16	269.31	33.17	195.64	42.68
74	I20_AR3	ActiveIntronRegion	1	3.06	1.04	8.82	1.93	5.28	1.17	9.49
75	ER21a	ExonRegion	0	60.92	124.87	82.11	194.93	54.96	190.42	34.82