Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	CD44	Gene	0	702.13	1636.73	1633.30	2582.15	15.23	2699.92	2543.70
2	279452	Transcript	1	221.12	472.44	980.06	445.30	6.62	192.29	2916.03
3	278385	Transcript	1	54.03	139.85	119.37	52.27	0.54	51.89	545.94
4	352818	Transcript	1	427.65	1503.36	240.24	368.95	25.68	152.14	321.60
5	263398	Transcript	1	77.59	1241.56	1001.43	4272.75	16.62	4616.23	79.45
6	278386	Transcript	0	62.54	0.00	100.18	3.25	0.00	0.00	0.00
7	360158	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	IG46_SR8	SilentIntergenicRegion	0	3.70	12.04	6.86	14.47	0.00	8.88	2.31
9	ER1a	ExonRegion	0	96.02	290.53	121.80	406.57	2.10	402.90	158.75
10	E1_Ab	KnownBoundary	0	62.80	891.23	124.45	956.80	1.06	1265.40	242.53
11	ER1b	ExonRegion	0	225.47	1933.81	448.72	2445.67	7.31	2945.31	836.41
12	E1a_E3a	KnownJunction	0	539.60	2952.36	1147.67	4040.10	19.94	4974.49	1765.57
13	ER1c	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	ER3a	ExonRegion	0	872.89	4772.34	2227.06	5810.97	27.17	7745.11	3036.12
16	E3a_E4a	KnownJunction	0	956.75	5761.12	2721.22	7400.26	36.29	9712.72	4050.16
17	E3a_E18b	KnownJunction	0	62.54	0.00	100.18	3.25	0.00	0.00	0.00
18	ER4a	ExonRegion	0	1384.85	7256.43	3663.13	8862.43	48.78	11332.46	5783.64
19	E4a_E5a	KnownJunction	0	1558.12	7808.71	3883.30	9899.14	74.11	12184.27	6632.28
20	E4a_E6a	NovelJunction	1	9.00	38.59	31.51	136.35	0.00	211.45	0.89
21	ER5a	ExonRegion	0	1821.51	7893.98	4621.07	10189.31	64.99	11645.85	7467.21
22	E5a_E6a	KnownJunction	0	1767.58	7627.20	4543.40	9919.24	43.80	11307.25	7421.33
23	ER6a	ExonRegion	0	1471.38	6279.95	3674.78	8155.71	53.63	9113.22	6555.51
24	E6_Da	NovelBoundary	1	163.46	530.76	209.20	191.64	0.90	179.45	285.78
25	E6a_E7a	KnownJunction	1	10.56	106.24	55.31	53.64	0.00	44.27	473.48
26	E6a_E8a	KnownJunction	1	221.12	472.44	980.06	445.30	6.62	192.29	2916.03
27	E6a_E9a	NovelJunction	1	12.20	21.28	63.32	48.25	0.00	20.80	683.98
28	E6a_E11a	NovelJunction	1	169.04	362.78	172.92	126.81	1.04	191.43	686.29
29	E6a_E12a	NovelJunction	1	13.69	96.63	17.66	39.39	0.00	20.07	38.29
30	E6a_E13a	KnownJunction	1	427.65	1503.36	240.24	368.95	25.68	152.14	321.60
31	E6a_E15a	NovelJunction	0	1.03	143.05	44.26	290.36	1.01	146.65	6.00
32	E6a_E16a	KnownJunction	1	77.59	1241.56	1001.43	4272.75	16.62	4616.23	79.45
33	I6_AR1	ActiveIntronRegion	0	158.66	279.41	186.88	98.60	1.02	92.38	160.60
34	I6_SR2	SilentIntronRegion	1	160.41	167.08	181.15	65.14	0.98	65.13	103.26
35	I6_AR2	ActiveIntronRegion	0	283.53	281.81	299.79	116.67	0.70	89.29	141.21
36	I6_AR5	ActiveIntronRegion	0	183.69	111.74	148.85	64.74	0.18	48.67	84.49
37	E7_Aa	NovelBoundary	0	218.45	152.82	232.04	34.89	0.00	87.80	171.10
38	ER7a	ExonRegion	0	131.16	188.37	222.85	70.71	0.45	79.57	640.39
39	E7_Da	NovelBoundary	0	197.88	162.96	217.90	55.37	0.00	65.15	144.60
40	E7a_E8a	KnownJunction	1	20.36	124.95	79.94	32.46	1.18	31.84	523.96
41	I7	Intron	0	195.08	89.63	216.13	44.54	0.40	42.03	134.06
42	I7_AR1	ActiveIntronRegion	0	195.38	89.76	216.46	44.61	0.40	42.10	134.26
43	ER8a	ExonRegion	1	457.44	617.45	1537.50	501.98	3.49	227.01	4332.57
44	E8a_E9a	KnownJunction	1	284.56	246.32	1620.30	360.47	0.00	38.11	5141.94
45	E8a_E13a	NovelJunction	1	62.57	254.73	34.86	72.52	3.41	40.12	26.03
46	I8	Intron	0	197.77	129.16	187.24	65.54	0.41	88.50	55.31
47	I8_AR1	ActiveIntronRegion	0	152.15	98.34	176.35	47.24	0.00	41.80	45.96
48	I8_SR2	SilentIntronRegion	0	251.36	86.71	202.07	40.92	0.34	56.13	47.17
49	I8_AR3	ActiveIntronRegion	1	214.11	91.58	202.08	41.94	0.00	57.39	30.34
50	I8_AR6	ActiveIntronRegion	0	244.30	200.98	238.20	102.83	0.65	141.24	81.00
51	I8_SR4	SilentIntronRegion	0	265.33	222.73	253.32	136.36	0.42	195.86	72.73
52	E9_Aa	NovelBoundary	1	604.81	318.57	479.18	207.54	0.00	366.33	139.59
53	ER9a	ExonRegion	1	248.14	345.05	1156.21	417.86	0.36	201.40	3896.40
54	E9a_E10a	KnownJunction	1	180.03	277.93	884.45	317.75	0.00	181.65	3592.30
55	I9	Intron	0	282.26	152.99	288.53	91.06	0.87	95.66	71.68
56	I9_AR1	ActiveIntronRegion	0	283.40	153.60	289.69	91.41	0.87	96.05	71.96
57	E10_Aa	NovelBoundary	1	413.06	264.29	471.07	130.55	0.00	138.26	113.92
58	ER10a	ExonRegion	1	398.99	424.40	1228.87	465.29	1.41	323.46	5145.21
59	E10a_E11a	KnownJunction	1	295.71	342.47	1179.23	447.22	0.00	275.13	4939.14
60	I10_SR2	SilentIntronRegion	0	210.19	100.86	205.62	54.66	0.02	74.90	43.41
61	ER11a	ExonRegion	1	440.11	688.30	1225.59	551.54	2.21	370.20	5610.65
62	E11_Da	NovelBoundary	1	358.00	281.16	353.48	204.43	0.00	132.10	127.79
63	E11a_E12a	KnownJunction	1	201.86	471.26	762.50	311.28	0.00	151.87	4802.03
64	I11	Intron	0	329.40	258.80	397.39	169.71	1.26	157.56	124.82
65	I11_AR1	ActiveIntronRegion	0	385.24	188.18	393.82	126.08	1.92	115.37	106.38
66	I11_SR1	SilentIntronRegion	0	392.83	238.49	458.51	160.87	1.42	137.56	124.84
67	I11_AR2	ActiveIntronRegion	0	263.01	293.78	347.52	188.22	0.98	185.13	129.60
68	ER12a	ExonRegion	1	365.36	755.24	1125.69	479.94	1.94	315.81	5588.94
69	E12a_E13a	KnownJunction	1	283.78	740.64	781.09	442.05	3.25	242.70	3896.94
70	I12_AR1	ActiveIntronRegion	0	145.18	110.74	195.67	66.07	0.94	58.53	34.15
71	ER13a	ExonRegion	1	1237.50	2734.85	1629.65	1038.14	29.10	504.13	5496.89
72	E13a_E14a	KnownJunction	1	1207.58	2737.80	1507.39	907.28	22.80	417.19	4870.95
73	ER14a	ExonRegion	1	891.01	2675.63	1197.66	844.75	19.08	339.19	4153.64
74	E14a_E15a	KnownJunction	1	757.71	2207.62	1062.53	687.19	15.51	207.24	4000.01
75	E14a_E16a	NovelJunction	1	54.81	167.64	28.11	83.44	3.41	15.46	52.18
76	I14	Intron	0	163.76	108.42	250.55	119.54	0.87	124.84	59.66
77	I14_SR1	SilentIntronRegion	0	278.50	189.86	370.26	165.41	0.84	186.77	72.97
78	I14_AR2	ActiveIntronRegion	0	252.26	148.91	304.70	167.75	1.42	185.88	72.63
79	ER15a	ExonRegion	1	988.45	2381.30	1448.54	1198.07	28.00	619.30	4302.95
80	E15a_E16a	KnownJunction	1	684.94	1852.53	938.28	1095.48	22.43	619.37	3195.02
81	ER16a	ExonRegion	0	833.89	3271.80	1940.15	5677.30	35.35	5217.57	3382.13
82	E16a_E17a	KnownJunction	0	1004.25	3532.38	2141.87	6167.18	45.28	5607.88	3619.20
83	E16a_E19a	NovelJunction	1	3.57	11.82	11.93	41.77	0.00	94.09	0.00
84	ER17a	ExonRegion	0	1161.35	3756.56	2422.14	6616.50	53.34	6056.41	3808.63
85	E17a_E18a	KnownJunction	0	1192.51	3663.13	2390.74	6578.13	55.51	5915.99	3645.97
86	E17a_E19a	NovelJunction	1	14.70	17.94	33.44	57.89	0.00	97.55	2.15
87	E18_Aa	NovelBoundary	1	464.45	17.71	928.65	13.19	0.00	27.04	10.00
88	ER18a	ExonRegion	0	1341.65	4073.37	2585.45	7212.50	43.14	6452.38	4140.17
89	E18a_E19a	KnownJunction	0	1293.27	4260.89	2433.79	7699.02	50.37	6794.01	4059.27
90	ER18b	ExonRegion	0	1378.06	4380.10	2629.05	7820.49	45.02	6865.40	4380.46
91	ER19a	ExonRegion	0	696.46	979.47	1651.69	2327.03	11.34	2371.20	1657.45