Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	NAP1L4	Gene	0	147.63	180.20	202.42	153.09	451.34	108.50	270.11
2	399614	Transcript	0	9.71	6.44	13.98	10.61	16.55	3.90	11.47
3	380542	Transcript	0	166.26	178.66	279.87	164.73	673.42	116.62	337.68
4	399624	Transcript	0	0.51	0.49	0.84	0.09	1.07	0.64	0.35
5	ER1a	ExonRegion	0	34.95	35.44	43.88	32.72	131.79	18.36	44.62
6	E1a_E2a	KnownJunction	0	5.69	0.00	4.34	1.25	16.90	1.37	0.00
7	ER2a	ExonRegion	0	13.91	8.88	19.81	10.18	24.82	4.02	18.35
8	E2a_E3a	KnownJunction	0	9.55	10.43	17.79	20.40	7.93	6.32	16.07
9	E3a_E4a	KnownJunction	0	222.06	208.28	364.70	187.01	853.55	156.51	322.73
10	ER3a	ExonRegion	0	182.52	176.39	308.36	167.37	725.47	123.19	236.70
11	ER4a	ExonRegion	0	137.45	184.84	246.80	172.99	403.05	128.85	293.13
12	E4a_E5a	KnownJunction	0	94.13	207.47	125.11	165.28	307.87	102.00	255.56
13	ER5a	ExonRegion	0	210.41	293.19	330.62	276.10	468.78	201.73	442.76
14	E5a_E6a	KnownJunction	0	284.01	290.25	461.50	253.55	665.19	189.72	448.90
15	E6_Aa	NovelBoundary	1	47.42	37.41	32.65	69.98	50.32	65.15	8.38
16	ER6a	ExonRegion	0	197.81	356.76	338.17	298.74	750.58	224.33	471.76
17	E6a_E7a	KnownJunction	0	222.94	391.92	291.69	288.55	583.91	218.77	372.40
18	ER7a	ExonRegion	0	202.62	337.05	348.21	280.37	575.84	195.17	427.92
19	E7a_E8a	KnownJunction	0	266.35	340.29	435.58	286.38	779.07	195.34	471.99
20	ER8a	ExonRegion	0	228.57	287.80	370.56	246.11	660.09	146.56	437.27
21	E8a_E9a	KnownJunction	0	180.82	261.16	362.15	270.50	643.20	138.18	393.04
22	ER9a	ExonRegion	0	217.55	223.75	376.06	226.39	709.14	128.51	414.62
23	E9_Da	NovelBoundary	0	176.73	153.61	268.48	127.19	463.62	78.98	279.69
24	E9b_E10a	KnownJunction	0	259.75	263.74	396.35	200.58	864.27	138.31	466.65
25	ER9b	ExonRegion	0	254.64	254.21	386.15	196.16	816.08	133.71	454.63
26	ER10a	ExonRegion	0	217.36	265.04	341.58	206.92	691.31	126.93	418.03
27	E10a_E11a	KnownJunction	0	227.70	227.35	315.70	156.56	573.23	95.43	404.28
28	ER11a	ExonRegion	0	219.24	262.61	327.25	219.77	768.21	140.64	443.21
29	E11a_E13a	KnownJunction	0	110.70	138.42	196.13	150.63	594.60	95.51	296.30
30	E11b_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	ER11b	ExonRegion	0	0.77	0.61	1.86	0.00	1.62	3.68	0.00
32	E12a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
33	ER12a	ExonRegion	0	0.09	0.00	0.15	0.00	0.09	0.41	0.00
34	E13a_E15a	KnownJunction	0	189.10	183.48	295.22	143.66	656.82	112.40	293.32
35	ER13a	ExonRegion	0	198.99	214.08	348.26	199.89	768.83	141.95	423.41
36	E14a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
37	ER14a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
38	ER15a	ExonRegion	0	206.49	198.01	282.01	173.42	658.97	128.37	358.95
39	E15a_E16a	KnownJunction	0	98.37	97.94	126.06	96.90	460.57	106.07	229.86
40	I15	Intron	0	37.76	32.16	31.00	17.29	22.76	10.01	9.15
41	I15_AR1	ActiveIntronRegion	1	36.35	43.08	32.40	21.21	20.07	10.71	10.00
42	I15_SR1	SilentIntronRegion	0	30.40	25.50	29.13	15.77	27.79	12.96	10.65
43	I15_AR2	ActiveIntronRegion	0	40.10	23.55	30.09	14.09	24.45	9.00	8.20
44	E16a_E17a	KnownJunction	0	186.83	205.81	220.74	129.14	524.29	89.08	284.51
45	ER16a	ExonRegion	0	171.36	168.14	216.24	134.51	560.66	119.86	329.34
46	E17_Aa	NovelBoundary	1	44.68	27.27	30.80	7.29	3.53	5.95	2.97
47	ER17a	ExonRegion	0	140.44	134.57	196.82	93.06	474.57	79.63	218.44
48	E17_Da	NovelBoundary	1	53.57	21.96	35.58	6.26	40.25	3.00	6.76
49	E17a_E18a	KnownJunction	0	33.15	37.44	73.72	31.15	220.57	44.76	76.73
50	E17a_E19a	NovelJunction	0	188.38	117.20	168.49	119.50	486.44	64.29	210.16
51	ER18a	ExonRegion	0	33.97	41.62	78.99	32.98	188.76	44.43	87.70
52	E18a_E19a	KnownJunction	0	20.76	28.27	53.08	26.25	144.96	19.35	56.16
53	I18_AR1	ActiveIntronRegion	0	31.46	13.85	15.39	8.00	26.16	1.41	7.08
54	I18_SR1	SilentIntronRegion	0	30.51	19.35	20.21	14.13	35.65	1.45	10.47
55	ER19a	ExonRegion	0	129.40	148.02	136.34	124.00	367.38	92.84	209.50
56	ER19b	ExonRegion	0	2.69	2.83	3.84	0.62	5.80	0.41	2.47
57	IG33_AR7	ActiveIntergenicRegion	0	5.27	7.70	4.07	4.26	0.56	5.58	2.53
58	IG33_SR1	SilentIntergenicRegion	0	4.21	8.11	2.95	5.33	0.16	3.15	2.65