Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	KNDC1	Gene	0	0.36	0.28	0.55	0.01	30.71	0.26	0.37
2	368572	Transcript	0	0.00	0.00	0.10	0.00	4.63	0.00	0.10
3	304613	Transcript	0	0	0	0	0	0	0	0
4	368571	Transcript	0	0.10	0.00	0.00	0.00	2.29	0.00	0.00
5	ER1a	ExonRegion	0	0.15	0.00	0.49	0.00	19.42	0.00	1.13
6	E1a_E2b	KnownJunction	0	0.85	0.00	0.00	0.00	19.53	0.00	1.65
7	ER2a	ExonRegion	0	0.20	0.00	0.00	0.00	2.02	0.00	0.00
8	E2_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	5.05	0.00	0.00
9	ER2b	ExonRegion	0	1.00	0.47	0.84	0.00	43.01	0.47	2.44
10	E2a_E3a	KnownJunction	0	2.39	0.00	2.10	0.00	51.96	0.00	4.54
11	ER3a	ExonRegion	0	1.91	0.56	1.22	0.00	47.67	0.12	2.52
12	E3a_E4a	KnownJunction	0	0.00	1.52	0.00	0.00	58.42	0.00	2.57
13	I3_AR3	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	7.55	0.00	0.00
14	I3_SR2	SilentIntronRegion	0	0.01	0.00	0.39	0.00	9.60	0.00	0.13
15	I3_AR9	ActiveIntronRegion	0	0.11	0.00	0.55	0.00	9.00	0.00	0.32
16	I3_SR6	SilentIntronRegion	0	0.65	0.00	0.90	0.00	11.03	0.00	0.98
17	ER4a	ExonRegion	0	0.26	2.28	0.84	0.00	32.14	0.58	0.85
18	E4a_E5a	KnownJunction	0	1.03	0.00	1.24	0.00	33.54	0.00	1.78
19	ER5a	ExonRegion	0	0.20	0.00	1.85	0.00	28.52	0.79	1.71
20	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	26.49	0.00	0.00
21	ER6a	ExonRegion	0	0.91	1.05	1.18	0.00	34.50	0.00	0.71
22	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	26.88	0.00	0.87
23	ER7a	ExonRegion	0	0.11	0.00	0.82	0.00	26.64	0.00	0.00
24	E7a_E8a	KnownJunction	0	0.78	0.00	1.45	0.00	46.47	0.00	0.00
25	ER8a	ExonRegion	0	0.64	0.00	1.78	0.00	43.52	0.00	0.00
26	E8a_E9a	KnownJunction	0	0.00	0.00	1.51	0.00	38.91	0.00	0.00
27	ER9a	ExonRegion	0	0.00	0.06	1.01	0.00	38.60	0.00	0.67
28	E9a_E10a	KnownJunction	0	0.00	0.00	0.89	0.00	37.85	0.00	0.64
29	ER10a	ExonRegion	0	0.35	0.56	1.34	0.00	40.73	0.00	0.45
30	E10a_E11a	KnownJunction	0	0.00	0.00	2.07	0.00	31.33	0.00	0.66
31	ER11a	ExonRegion	0	0.00	1.11	1.64	0.00	46.97	0.00	0.53
32	E11a_E12a	KnownJunction	0	0.00	0.00	0.62	0.00	38.48	0.00	0.00
33	ER12a	ExonRegion	0	0.00	0.01	0.46	0.00	40.44	0.00	0.00
34	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	23.97	0.00	0.00
35	ER13a	ExonRegion	0	0.36	0.00	0.00	0.00	32.70	0.00	0.31
36	E13a_E14a	KnownJunction	0	0.00	0.00	0.00	0.00	27.04	0.00	0.00
37	ER14a	ExonRegion	0	0.25	0.00	0.32	0.00	18.88	0.27	0.19
38	E14a_E15a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	E14a_E15b	KnownJunction	0	0.00	0.00	1.67	0.00	67.18	0.00	1.33
40	ER15a	ExonRegion	0	0.00	0.00	0.19	0.00	9.26	0.00	0.19
41	ER15b	ExonRegion	0	0.69	0.64	2.39	0.00	54.29	0.00	1.54
42	E15a_E16a	KnownJunction	0	0.87	0.00	2.08	0.00	40.23	0.00	0.00
43	ER16a	ExonRegion	0	0.23	0.00	0.79	0.00	48.85	0.01	0.20
44	E16a_E17a	KnownJunction	0	0.00	0.00	1.51	0.00	41.22	0.00	0.75
45	ER17a	ExonRegion	0	0.85	0.00	0.69	0.00	28.77	0.47	0.10
46	E17a_E18a	KnownJunction	0	1.97	0.00	1.06	0.00	28.31	0.00	0.00
47	ER18a	ExonRegion	0	0.72	0.17	0.94	0.00	56.16	0.00	0.52
48	E18a_E19a	KnownJunction	0	0.00	1.16	1.52	0.00	28.75	0.00	0.00
49	ER19a	ExonRegion	0	1.12	1.04	0.91	0.00	48.76	0.00	0.52
50	E19_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	3.04	0.00	0.00
51	E19a_E19b	KnownJunction	0	0.67	1.37	0.89	0.00	77.48	0.00	0.00
52	ER19b	ExonRegion	0	0.00	0.01	0.00	0.00	2.56	0.00	0.00
53	E19_Ab	KnownBoundary	0	0.00	0.00	0.50	0.00	3.00	0.00	0.00
54	ER19c	ExonRegion	0	0.22	0.98	0.71	0.00	114.19	0.66	0.00
55	E19_Db	KnownBoundary	0	0.70	0.00	0.83	0.00	78.84	1.66	0.72
56	ER19d	ExonRegion	0	0.33	0.00	0.22	0.00	47.88	0.33	0.65
57	E19c_E20a	KnownJunction	0	0.00	0.00	0.00	0.00	59.98	0.00	0.60
58	ER20a	ExonRegion	0	0.00	0.00	0.00	0.00	86.18	0.00	0.47
59	E20a_E21a	KnownJunction	0	0.00	0.00	0.00	0.00	35.16	0.00	0.54
60	ER21a	ExonRegion	0	0.00	0.00	0.00	0.00	41.66	0.00	0.03
61	E21a_E22a	KnownJunction	0	0.00	0.00	0.00	0.00	80.04	0.00	0.00
62	ER22a	ExonRegion	0	0.00	0.86	0.25	0.00	43.16	0.00	0.13
63	E22a_E23a	KnownJunction	0	0.00	1.34	0.57	0.00	26.74	0.00	0.89
64	I22	Intron	0	0.00	0.00	0.00	0.00	8.18	0.18	0.00
65	I22_SR1	SilentIntronRegion	0	0.00	0.00	0.00	0.00	8.21	0.18	0.00
66	E23_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	11.53	0.00	0.00
67	ER23a	ExonRegion	0	0.28	0.63	0.28	0.00	51.52	1.79	0.38
68	E23a_E24a	KnownJunction	0	0.00	1.13	0.00	0.00	85.73	0.00	0.00
69	ER24a	ExonRegion	0	1.19	0.94	1.80	0.00	92.64	0.44	0.00
70	E24a_E25a	KnownJunction	0	3.64	0.00	2.72	0.00	88.08	2.81	0.00
71	ER25a	ExonRegion	0	1.26	0.00	1.40	0.00	77.63	0.39	0.00
72	E25a_E26a	KnownJunction	0	0.00	0.00	2.41	0.00	57.68	0.00	0.00
73	ER26a	ExonRegion	0	0.00	0.00	0.41	0.00	46.21	0.76	0.00
74	E26a_E27a	KnownJunction	0	0.00	0.00	0.00	0.00	47.97	0.00	0.00
75	ER27a	ExonRegion	0	0.00	0.00	0.00	0.00	50.32	0.00	0.00
76	E27a_E28a	KnownJunction	0	0.00	0.00	0.00	0.00	53.48	0.00	0.89
77	ER28a	ExonRegion	0	0.00	0.00	0.32	0.29	36.20	1.85	0.00
78	E28a_E29a	KnownJunction	0	0.00	0.00	0.00	1.68	45.18	0.00	0.00
79	ER29a	ExonRegion	0	0.07	0.00	0.04	0.03	9.09	0.15	0.06