Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	MGEA5	Gene	0	259.48	216.81	223.50	139.22	440.47	105.54	261.56
2	370094	Transcript	1	79.34	30.22	49.39	7.72	42.50	6.08	26.82
3	361464	Transcript	0	597.95	268.61	305.92	193.25	800.83	143.04	300.99
4	357797	Transcript	0	8.40	12.26	7.82	4.84	24.56	3.81	4.08
5	ER1a	ExonRegion	0	40.02	93.67	36.46	45.90	39.09	34.89	54.78
6	E1a_E2a	KnownJunction	0	61.07	122.79	84.17	86.31	147.75	66.62	90.80
7	E1a_E5a	NovelJunction	1	0.00	12.30	1.42	1.03	0.00	2.87	0.00
8	ER2a	ExonRegion	0	190.41	226.50	256.62	114.84	342.46	118.69	280.03
9	E2a_E3a	KnownJunction	0	240.74	276.45	321.67	134.34	328.09	144.00	343.60
10	ER3a	ExonRegion	0	219.44	309.68	278.54	189.74	321.69	161.76	282.21
11	E3a_E4a	KnownJunction	0	191.12	287.36	229.95	166.42	290.93	103.15	282.59
12	I3_AR3	ActiveIntronRegion	0	62.44	23.11	54.23	11.42	23.71	3.46	20.31
13	ER4a	ExonRegion	0	289.35	378.51	385.33	232.47	470.93	164.18	412.73
14	E4a_E5a	KnownJunction	0	299.17	374.11	361.73	227.27	490.56	127.43	344.51
15	ER5a	ExonRegion	0	264.66	346.69	345.94	201.99	401.15	127.27	338.49
16	E5a_E6a	KnownJunction	0	226.83	290.88	298.41	150.92	345.54	116.50	274.15
17	E5a_E7a	NovelJunction	0	1.60	2.84	5.82	8.70	10.24	0.00	4.54
18	ER6a	ExonRegion	0	214.91	294.71	306.64	170.28	343.92	131.91	311.60
19	E6a_E7a	KnownJunction	0	232.49	296.16	364.19	168.59	375.42	128.34	340.06
20	ER7a	ExonRegion	0	272.34	368.17	385.03	212.36	450.91	159.55	444.23
21	E7a_E8a	KnownJunction	0	262.67	395.49	329.50	254.52	593.01	140.73	473.68
22	E7a_E9a	KnownJunction	0	2.50	6.99	7.19	1.65	10.49	0.00	2.72
23	ER8a	ExonRegion	0	328.63	421.51	384.21	268.47	645.25	165.40	504.83
24	E8a_E9a	KnownJunction	0	259.88	411.44	325.92	272.02	540.98	182.13	503.31
25	ER9a	ExonRegion	0	371.18	368.99	376.07	243.94	652.47	173.88	468.25
26	E9a_E10a	KnownJunction	0	599.25	346.89	422.39	217.00	771.44	168.03	362.64
27	ER10a	ExonRegion	0	459.13	261.78	334.16	165.19	725.81	123.81	328.84
28	E10_Da	KnownBoundary	1	132.89	32.18	71.66	5.34	54.15	3.08	27.93
29	E10a_E11a	KnownJunction	0	223.34	142.44	210.99	96.80	604.54	78.12	313.93
30	E10a_E12a	NovelJunction	1	40.99	12.87	36.17	19.83	5.05	17.66	1.42
31	ER10b	ExonRegion	1	79.34	30.22	49.39	7.72	42.50	6.08	26.82
32	I10	Intron	0	179.59	73.43	119.84	37.51	66.84	29.34	57.31
33	I10_AR3	ActiveIntronRegion	0	189.45	77.81	126.68	40.02	69.92	31.24	60.36
34	E11_Aa	NovelBoundary	1	347.30	125.63	154.41	95.09	84.10	70.48	79.74
35	ER11a	ExonRegion	0	426.21	224.97	278.11	157.77	718.87	111.87	302.45
36	E11_Da	NovelBoundary	1	133.17	20.28	89.11	7.02	72.87	4.56	29.35
37	E11a_E12a	KnownJunction	1	548.06	249.92	269.98	192.75	692.92	137.21	263.88
38	E11a_E12b	KnownJunction	0	14.30	17.52	8.45	8.02	38.64	7.61	5.45
39	ER12a	ExonRegion	1	647.83	287.30	341.86	193.74	908.73	148.86	338.10
40	E12_Ab	KnownBoundary	0	709.46	309.74	389.15	200.83	1088.42	174.95	371.16
41	ER12b	ExonRegion	1	750.63	362.73	403.69	218.52	1005.55	202.90	387.10
42	E12a_E13a	KnownJunction	1	749.93	384.19	392.09	232.82	736.01	188.48	362.34
43	I12_AR3	ActiveIntronRegion	0	77.51	27.51	56.81	15.39	34.21	10.35	16.74
44	E13_Aa	NovelBoundary	1	99.72	31.50	70.30	16.07	19.53	5.39	19.88
45	ER13a	ExonRegion	1	588.26	358.76	347.41	204.34	711.64	149.89	304.77
46	E13_Da	NovelBoundary	1	70.48	19.02	38.44	9.59	36.15	6.00	23.53
47	E13a_E14a	KnownJunction	0	363.34	241.70	250.62	163.66	652.30	96.83	254.18
48	ER14a	ExonRegion	0	393.93	234.08	304.11	171.95	589.05	120.74	305.74
49	E14a_E15a	KnownJunction	0	235.38	260.11	240.55	174.52	396.92	116.47	259.26
50	ER15a	ExonRegion	0	307.73	269.74	268.41	187.00	498.74	135.23	275.55
51	E15a_E16a	KnownJunction	0	294.31	270.10	252.82	201.31	500.73	174.98	281.64
52	ER16a	ExonRegion	0	289.59	204.14	212.87	143.88	573.22	117.11	281.60