Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	HPS1	Gene	0	61.80	59.90	36.96	29.92	62.33	32.40	154.25
2	338546	Transcript	0	7.75	13.08	5.37	5.45	21.82	8.13	12.53
3	249092	Transcript	0	8.25	4.74	6.42	3.41	6.19	3.58	18.88
4	361490	Transcript	0	0	0	0	0	0	0	0
5	407891	Transcript	0	0	0	0	0	0	0	0
6	325103	Transcript	0	0	0	0	0	0	0	0
7	359632	Transcript	0	1.54	1.21	0.00	0.00	0.00	0.00	0.67
8	IG29_SR3	SilentIntergenicRegion	0	0.00	0.37	0.14	2.52	5.07	17.77	0.00
9	IG29_AR4	ActiveIntergenicRegion	0	0.00	0.00	0.12	0.82	1.67	14.82	0.00
10	IG29_AR3	ActiveIntergenicRegion	0	0.00	0.00	0.09	0.66	1.36	11.89	0.00
11	IG29_AR2	ActiveIntergenicRegion	0	3.43	6.46	4.85	5.75	5.01	9.94	3.18
12	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	ER1b	ExonRegion	0	0.10	1.15	0.44	1.28	0.63	0.00	0.07
14	E1_Ac	KnownBoundary	0	1.42	7.78	1.38	2.52	1.13	0.00	3.24
15	ER1c	ExonRegion	0	12.18	23.37	10.08	12.45	19.70	12.18	46.08
16	E1a_E2a	KnownJunction	1	7.64	25.12	6.71	2.17	6.78	10.69	32.99
17	E1a_E2b	KnownJunction	0	0.00	3.13	0.80	0.00	0.00	0.00	3.05
18	I1_AR1	ActiveIntronRegion	1	1.12	1.94	1.57	4.21	2.10	10.94	1.28
19	E2_Ab	NovelBoundary	1	6.24	27.90	8.61	5.09	26.30	12.14	29.34
20	ER2a	ExonRegion	1	7.53	32.07	9.21	6.36	24.70	12.26	42.09
21	ER2b	ExonRegion	0	28.20	72.28	25.84	32.68	54.84	36.53	114.50
22	E2_Da	NovelBoundary	0	2.44	2.68	1.58	1.16	0.00	9.38	0.77
23	E2a_E3a	KnownJunction	0	50.95	100.15	42.58	44.29	96.82	68.74	202.09
24	ER3a	ExonRegion	0	94.57	127.00	52.36	54.43	154.50	77.03	222.59
25	E3_Da	NovelBoundary	1	2.85	16.79	0.00	0.00	7.38	2.95	5.19
26	E3a_E4a	KnownJunction	0	121.87	127.86	62.09	70.11	155.01	85.76	257.99
27	I3_AR1	ActiveIntronRegion	0	6.05	11.15	3.32	3.31	27.44	4.65	14.03
28	ER4a	ExonRegion	0	109.51	163.05	65.38	65.32	129.01	91.05	310.47
29	E4a_E5a	KnownJunction	0	126.54	141.13	57.55	67.27	146.78	59.95	276.04
30	E4a_E6a	KnownJunction	0	16.84	7.22	17.00	7.15	8.94	11.47	38.45
31	E5_Aa	NovelBoundary	0	2.84	12.48	3.19	8.13	2.19	12.97	0.89
32	ER5a	ExonRegion	0	96.39	121.96	54.73	55.37	129.59	59.28	268.22
33	E5a_E6a	KnownJunction	0	66.33	70.67	37.45	65.15	111.25	33.18	195.29
34	I5	Intron	0	7.32	8.95	5.21	4.32	13.23	1.75	6.30
35	I5_SR1	SilentIntronRegion	0	12.63	9.41	6.16	6.96	15.09	3.62	6.92
36	I5_SR2	SilentIntronRegion	0	6.51	9.05	5.40	3.66	13.56	1.02	6.94
37	ER6a	ExonRegion	0	71.54	94.67	46.18	50.23	112.19	46.59	222.01
38	E6_Da	NovelBoundary	0	21.21	21.25	27.23	20.54	24.53	14.47	25.38
39	E6a_E7a	KnownJunction	0	67.04	95.00	31.90	30.59	84.88	44.76	248.03
40	E6a_E8a	KnownJunction	0	4.81	2.55	1.62	3.31	5.46	0.00	9.93
41	ER7a	ExonRegion	0	68.69	87.08	32.59	51.37	76.64	37.21	217.73
42	E7a_E8a	KnownJunction	0	60.18	69.67	41.54	44.56	80.29	29.56	192.74
43	E8_Aa	NovelBoundary	0	5.34	11.90	2.27	3.58	3.04	12.54	4.53
44	ER8a	ExonRegion	0	89.42	99.50	50.83	56.40	115.19	47.81	250.88
45	E8a_E9a	KnownJunction	1	62.50	95.08	14.80	33.35	51.09	38.62	149.61
46	E8a_E10a	KnownJunction	0	34.72	20.54	44.99	14.95	84.60	17.88	96.18
47	ER9a	ExonRegion	1	64.84	82.44	17.52	32.87	62.66	35.83	137.59
48	E9a_E10a	KnownJunction	0	66.68	76.69	20.84	33.13	77.73	27.76	158.81
49	I9	Intron	1	2.20	12.43	1.62	1.25	2.51	1.24	2.75
50	I9_AR1	ActiveIntronRegion	1	2.22	12.59	1.65	1.26	2.54	1.26	2.79
51	ER10a	ExonRegion	0	105.57	110.36	57.32	53.74	127.42	58.80	311.36
52	E10_Da	KnownBoundary	0	17.31	40.06	10.23	15.12	42.16	31.22	29.69
53	E10a_E11a	KnownJunction	1	59.42	79.76	23.08	37.90	42.65	43.34	228.17
54	ER10b	ExonRegion	0	7.75	13.08	5.37	5.45	21.82	8.13	12.53
55	E10_Db	NovelBoundary	0	11.77	25.82	12.32	11.87	35.48	29.02	30.77
56	I10_AR1	ActiveIntronRegion	0	11.00	14.72	5.28	7.94	24.90	9.25	14.09
57	ER11a	ExonRegion	0	75.89	67.98	32.93	35.66	48.36	36.19	195.19
58	E11a_E12a	KnownJunction	0	78.18	53.62	41.17	25.66	68.79	26.26	165.30
59	ER12a	ExonRegion	0	79.56	60.15	39.02	28.59	63.93	32.40	208.72
60	E12a_E13a	KnownJunction	0	59.18	45.63	23.48	11.95	34.19	17.39	97.75
61	ER13a	ExonRegion	0	52.64	47.11	25.64	21.20	40.29	17.35	119.46
62	E13a_E14a	KnownJunction	0	76.41	61.66	40.96	24.46	59.55	18.09	183.01
63	ER14a	ExonRegion	0	81.13	43.32	43.13	20.37	69.43	14.38	186.30
64	E14a_E15a	KnownJunction	0	82.15	32.18	47.74	16.61	52.12	15.97	195.52
65	ER15a	ExonRegion	0	71.58	55.95	46.41	22.98	60.22	24.65	198.11
66	E15a_E16a	KnownJunction	0	83.37	60.56	58.14	39.17	50.12	27.04	218.08
67	ER16a	ExonRegion	0	96.97	64.01	60.83	33.01	78.33	21.22	234.78
68	E16_Da	NovelBoundary	1	35.65	1.55	21.50	0.00	2.35	1.39	3.22
69	E16a_E17a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
70	E16b_E17b	KnownJunction	0	101.66	59.29	60.93	29.07	80.39	24.87	224.86
71	E16c_E17c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
72	ER16b	ExonRegion	0	102.66	60.26	60.96	32.67	87.79	25.26	239.62
73	ER16c	ExonRegion	0	1.92	0.00	0.68	3.74	0.00	0.00	0.67
74	E17_Ac	NovelBoundary	1	38.10	5.46	19.18	1.14	2.17	0.00	2.36
75	ER17a	ExonRegion	0	11.36	9.18	7.07	3.19	10.35	2.86	27.13
76	ER17b	ExonRegion	0	100.86	62.57	61.30	29.30	82.20	24.83	237.79
77	ER17c	ExonRegion	0	80.78	66.39	63.10	35.41	95.49	31.30	239.94
78	E17a_E18a	KnownJunction	0	115.14	71.54	79.97	39.72	113.35	26.37	300.06
79	ER18a	ExonRegion	0	104.06	77.42	68.87	47.00	94.16	47.35	271.81
80	E18a_E19a	KnownJunction	0	77.01	74.48	75.69	50.63	87.95	43.55	255.27
81	ER19a	ExonRegion	0	85.82	77.94	63.66	55.66	86.78	43.87	286.05
82	E19a_E20a	KnownJunction	0	102.94	80.47	64.64	65.45	91.36	52.07	337.40
83	ER20a	ExonRegion	0	72.14	57.23	44.85	31.62	63.03	39.43	161.62
84	E20_Da	KnownBoundary	0	51.41	36.65	40.19	11.78	46.50	23.32	90.17
85	ER20b	ExonRegion	0	23.49	12.32	15.43	5.77	10.15	8.38	22.63
86	ER20c	ExonRegion	0	1.54	1.21	0.00	0.00	0.00	0.00	0.67
87	IG28	Intergenic	0	5.98	5.05	6.42	1.82	2.74	2.29	8.71
88	IG28_AR1	ActiveIntergenicRegion	0	5.99	5.06	6.43	1.82	2.74	2.29	8.73