Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	COX15	Gene	0	70.67	23.11	63.37	23.37	141.97	27.81	67.13
2	16171	Transcript	0	47.92	15.08	42.01	14.85	96.85	17.59	39.99
3	370483	Transcript	0	1.39	0.00	6.19	0.00	6.45	1.66	1.61
4	ER1a	ExonRegion	0	5.50	4.06	2.68	1.50	11.14	4.40	11.62
5	E1_Ab	KnownBoundary	1	16.76	8.75	8.08	2.84	30.38	9.30	28.46
6	ER1b	ExonRegion	1	33.34	20.70	24.01	9.27	101.73	18.92	58.05
7	E1a_E2a	KnownJunction	0	3.99	15.76	6.15	5.50	10.67	9.00	14.62
8	E2_Aa	NovelBoundary	0	1.79	3.86	1.71	5.61	1.18	13.32	12.51
9	ER2a	ExonRegion	0	37.65	22.70	33.19	16.08	117.51	25.95	77.15
10	E2_Da	NovelBoundary	1	2.32	2.57	0.00	2.44	3.27	26.40	6.46
11	E2a_E3a	KnownJunction	0	18.59	24.96	30.34	13.92	96.94	14.63	46.35
12	I2	Intron	0	4.01	2.22	8.41	2.54	1.48	11.06	8.50
13	I2_SR1	SilentIntronRegion	1	4.03	2.23	8.44	2.55	1.49	11.09	8.53
14	E3_Aa	NovelBoundary	1	6.04	2.18	9.37	1.68	5.21	18.36	14.93
15	ER3a	ExonRegion	0	46.36	39.34	50.02	24.75	124.93	22.59	85.26
16	E3_Da	NovelBoundary	1	11.92	1.37	10.17	10.16	5.33	21.12	16.41
17	E3a_E4a	KnownJunction	1	60.75	37.67	57.45	26.22	144.13	15.76	81.37
18	I3	Intron	1	4.30	2.90	5.70	9.28	4.57	9.39	14.14
19	I3_SR1	SilentIntronRegion	1	4.65	2.99	6.18	10.15	4.82	10.28	15.27
20	E4_Aa	NovelBoundary	1	1.59	3.36	3.62	5.01	4.52	12.52	20.05
21	ER4a	ExonRegion	0	58.89	40.66	59.64	29.57	163.36	30.51	108.13
22	E4_Da	NovelBoundary	0	3.34	9.72	3.69	1.35	0.00	10.59	11.95
23	E4a_E5a	KnownJunction	1	54.78	31.63	43.08	21.54	135.67	10.10	114.61
24	I4	Intron	1	6.76	3.80	10.36	5.79	2.50	9.89	14.41
25	I4_SR1	SilentIntronRegion	1	7.02	3.95	10.74	6.02	2.59	10.27	14.97
26	E5_Aa	NovelBoundary	1	6.59	8.17	9.08	3.60	1.06	10.34	22.24
27	ER5a	ExonRegion	0	62.93	37.73	58.81	20.11	188.60	28.03	119.17
28	E5_Da	NovelBoundary	1	9.48	4.94	12.59	9.78	3.53	20.15	24.01
29	E5a_E6a	KnownJunction	1	82.35	56.83	64.72	11.95	182.51	13.40	116.39
30	I5_AR3	ActiveIntronRegion	1	5.76	1.98	8.73	5.08	1.11	5.74	17.32
31	ER6a	ExonRegion	1	60.54	37.32	56.08	13.91	133.33	15.40	74.24
32	E6a_E7a	KnownJunction	0	57.76	21.17	41.54	9.27	116.53	15.81	49.86
33	E6a_E8a	NovelJunction	1	0.00	6.52	0.00	6.75	8.78	2.73	13.00
34	I6	Intron	0	6.90	4.98	13.11	9.32	9.42	13.23	13.25
35	I6_AR1	ActiveIntronRegion	1	11.38	9.43	24.72	17.95	12.88	27.65	24.75
36	E7_Aa	NovelBoundary	1	8.81	15.50	26.73	16.66	18.28	39.48	39.38
37	ER7a	ExonRegion	0	61.66	25.57	68.40	30.50	140.92	36.35	76.19
38	E7_Da	NovelBoundary	1	15.97	12.19	22.33	8.75	8.46	36.58	29.35
39	E7a_E8a	KnownJunction	0	43.16	12.19	32.88	14.79	107.59	7.53	37.96
40	I7	Intron	1	14.05	11.24	22.63	20.41	13.44	32.68	38.20
41	I7_AR1	ActiveIntronRegion	1	7.48	5.74	16.19	9.40	6.37	22.20	26.76
42	I7_SR1	SilentIntronRegion	1	16.28	11.31	24.19	22.23	15.39	35.44	40.29
43	I7_AR2	ActiveIntronRegion	1	8.39	14.16	19.83	19.09	9.20	27.14	36.08
44	E8_Aa	NovelBoundary	1	7.39	15.45	14.14	21.65	4.47	15.76	31.49
45	ER8a	ExonRegion	0	43.17	18.46	45.30	17.82	98.42	15.85	47.13
46	E8_Da	NovelBoundary	1	8.19	11.27	5.20	16.63	15.93	12.62	20.42
47	E8a_E9a	KnownJunction	0	28.77	15.40	27.95	8.99	86.68	7.37	26.15
48	E8a_E9b	KnownJunction	0	1.39	0.00	6.19	0.00	6.45	1.66	1.61
49	I8	Intron	1	6.94	5.71	18.18	8.66	9.28	27.84	19.36
50	I8_AR2	ActiveIntronRegion	1	9.04	7.45	23.69	11.28	12.09	36.25	25.22
51	E9_Aa	NovelBoundary	1	17.91	5.94	35.16	14.36	11.27	28.06	24.13
52	ER9a	ExonRegion	0	74.32	21.03	62.91	23.59	131.22	29.55	58.82
53	E9_Ab	KnownBoundary	0	111.54	11.45	92.63	25.68	130.76	22.99	60.22
54	ER9b	ExonRegion	0	101.45	25.70	91.67	30.45	136.28	23.28	62.77
55	E9_Da	KnownBoundary	0	92.66	22.93	82.72	31.72	151.87	22.32	63.82
56	ER9c	ExonRegion	0	83.08	19.85	74.48	25.31	158.36	29.02	63.37
57	IG35	Intergenic	0	47.36	18.85	82.76	24.79	27.86	42.20	47.63
58	IG35_AR1	ActiveIntergenicRegion	0	47.37	18.85	82.77	24.80	27.87	42.21	47.63