Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	MAPK8	Gene	0	114.06	125.38	87.34	141.96	125.72	110.65	39.87
2	374189	Transcript	0	38.22	52.38	28.10	58.12	43.39	46.63	11.32
3	395611	Transcript	0	0.98	0.00	0.00	1.68	0.00	0.00	0.00
4	374176	Transcript	0	0	0	0	0	0	0	0
5	360332	Transcript	0	0	0	0	0	0	0	0
6	374179	Transcript	0	0	0	0	0	0	0	0
7	374182	Transcript	0	0	0	0	0	0	0	0
8	374174	Transcript	0	2.73	0.59	1.92	0.00	1.13	0.00	0.77
9	ER1a	ExonRegion	0	13.70	29.43	6.16	30.80	12.68	17.35	3.10
10	E1a_E2b	KnownJunction	0	4.87	29.16	6.12	27.36	2.03	22.06	0.67
11	I1_AR1	ActiveIntronRegion	0	31.88	29.24	20.76	44.69	27.66	31.59	10.54
12	ER2a	ExonRegion	0	5.98	4.60	4.35	2.76	0.69	2.71	0.29
13	E2_Ac	KnownBoundary	0	130.55	135.25	81.81	134.13	67.15	107.47	43.61
14	ER2b	ExonRegion	0	72.11	97.80	46.97	75.56	43.10	70.80	15.83
15	E2_Ad	KnownBoundary	0	132.82	164.12	97.10	143.94	74.71	156.97	39.21
16	ER2c	ExonRegion	0	140.49	181.09	98.94	153.89	87.75	153.25	37.26
17	ER2d	ExonRegion	0	201.95	300.86	175.95	280.39	136.56	244.68	75.73
18	E2a_E3a	KnownJunction	0	194.94	296.00	164.58	313.28	130.73	277.22	71.93
19	ER3a	ExonRegion	0	200.37	328.39	184.58	342.63	152.02	263.24	85.77
20	E3a_E4a	KnownJunction	0	218.86	318.88	204.16	344.25	212.85	261.97	100.96
21	ER4a	ExonRegion	0	214.82	275.40	210.61	330.57	184.93	215.65	101.61
22	E4a_E5a	KnownJunction	0	194.35	261.40	192.48	320.51	197.17	197.76	84.99
23	ER5a	ExonRegion	0	215.34	311.89	189.20	334.35	190.83	199.85	92.50
24	E5_Da	NovelBoundary	1	82.53	53.12	38.04	24.87	4.52	17.82	12.08
25	E5a_E6a	KnownJunction	0	162.86	219.08	144.97	277.03	133.64	172.54	68.52
26	ER6a	ExonRegion	0	161.51	255.09	155.41	314.25	213.36	168.70	88.06
27	E6_Da	NovelBoundary	0	35.82	17.29	20.52	8.18	6.41	2.22	6.08
28	E6a_E7a	KnownJunction	0	8.51	11.24	8.09	14.17	19.09	19.48	3.32
29	E6a_E8a	KnownJunction	0	154.08	177.65	121.75	269.39	267.30	143.94	67.95
30	E6a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	E6a_E11b	KnownJunction	0	0.98	0.00	0.00	1.68	0.00	0.00	0.00
32	I6	Intron	0	36.92	13.53	17.38	4.64	4.81	3.60	4.95
33	I6_SR1	SilentIntronRegion	0	42.42	13.19	17.98	4.97	4.87	3.55	4.68
34	I6_AR1	ActiveIntronRegion	1	73.58	40.17	23.40	11.18	6.98	1.06	7.54
35	I6_AR2	ActiveIntronRegion	0	35.83	20.77	20.46	5.95	6.73	5.90	7.30
36	E7_Aa	NovelBoundary	1	51.76	27.77	20.56	12.19	8.83	5.92	4.93
37	ER7a	ExonRegion	0	13.99	19.03	10.61	16.44	19.67	17.67	5.08
38	E7_Da	NovelBoundary	0	37.70	12.64	19.56	10.92	11.18	4.66	5.60
39	E7a_E11a	KnownJunction	0	7.16	17.16	6.70	8.64	17.80	10.88	4.82
40	E8_Aa	NovelBoundary	0	80.21	13.14	26.61	3.22	16.57	4.98	11.79
41	ER8a	ExonRegion	0	185.02	205.75	135.59	274.54	220.27	145.40	75.48
42	E8_Da	NovelBoundary	1	71.35	34.94	24.86	6.34	20.54	11.47	12.88
43	E8a_E11a	KnownJunction	0	193.74	217.24	138.85	261.13	193.71	160.56	83.41
44	I8	Intron	0	61.25	23.16	28.85	4.31	12.03	5.81	8.54
45	I8_SR1	SilentIntronRegion	0	61.44	23.23	28.94	4.32	12.07	5.83	8.56
46	E9_Aa	NovelBoundary	0	20.36	13.35	24.62	2.47	8.44	7.37	11.52
47	ER9a	ExonRegion	0	0.06	0.09	0.02	0.00	0.02	0.00	0.02
48	E9_Da	NovelBoundary	1	42.11	36.28	13.78	7.59	9.89	6.19	6.64
49	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
50	I9	Intron	1	70.69	25.92	30.86	7.85	14.07	10.01	6.65
51	I9_AR1	ActiveIntronRegion	1	70.93	26.01	30.97	7.88	14.11	10.04	6.68
52	E10_Aa	NovelBoundary	1	90.91	16.24	41.00	4.44	22.91	2.25	10.52
53	ER10a	ExonRegion	0	10.86	2.25	7.67	0.00	4.51	0.00	3.06
54	E11_Aa	NovelBoundary	1	79.73	21.86	25.91	8.89	20.54	12.84	8.46
55	ER11a	ExonRegion	0	363.16	330.67	231.57	370.88	313.96	239.06	123.03
56	E11_Da	NovelBoundary	1	34.48	8.91	14.08	8.05	5.51	1.29	2.48
57	E11a_E12a	KnownJunction	0	239.82	259.27	182.37	243.85	329.49	141.74	81.96
58	ER11b	ExonRegion	0	261.45	290.91	197.69	310.16	297.56	193.94	101.97
59	ER12a	ExonRegion	0	272.76	255.20	188.56	258.53	295.48	175.27	104.91
60	E12_Da	NovelBoundary	1	73.62	40.06	51.96	29.37	3.92	22.91	4.92
61	E12a_E13a	KnownJunction	0	91.29	163.67	88.42	132.15	152.08	109.02	53.66
62	I12	Intron	1	41.15	26.24	27.19	16.57	5.09	10.84	3.38
63	I12_AR1	ActiveIntronRegion	0	41.27	26.31	27.27	16.61	5.10	10.87	3.38
64	E13_Aa	NovelBoundary	1	35.55	22.30	18.70	14.11	0.90	9.70	3.38
65	ER13a	ExonRegion	0	92.92	138.85	84.60	130.15	136.08	86.18	49.16
66	E13_Da	NovelBoundary	1	36.52	21.60	7.83	15.33	4.01	5.68	3.43
67	E13a_E14a	KnownJunction	0	113.61	141.37	88.78	191.32	105.21	85.30	59.55
68	I13	Intron	0	34.74	22.17	13.92	11.49	3.82	7.21	2.54
69	I13_AR1	ActiveIntronRegion	0	28.62	22.62	9.41	11.96	2.58	9.89	2.62
70	I13_SR1	SilentIntronRegion	0	34.46	21.31	16.74	13.08	3.04	10.65	2.88
71	I13_AR2	ActiveIntronRegion	1	47.61	19.49	17.06	10.77	4.55	7.41	2.52
72	I13_SR2	SilentIntronRegion	0	32.79	23.00	13.31	11.20	4.06	5.82	2.45
73	ER14a	ExonRegion	0	119.45	147.39	97.86	196.48	163.68	100.94	68.25
74	E14a_E15a	KnownJunction	0	58.82	76.08	53.80	72.79	69.83	53.44	24.18
75	E14a_E15b	KnownJunction	0	19.23	31.74	16.09	22.76	46.82	16.27	17.14
76	ER15a	ExonRegion	0	66.21	87.27	54.64	79.18	74.51	55.37	29.12
77	ER15b	ExonRegion	0	70.97	62.67	50.75	38.42	75.58	26.94	19.76
78	E15_Da	KnownBoundary	0	84.85	30.87	57.74	12.11	41.77	25.51	20.81
79	ER15c	ExonRegion	0	178.16	84.12	123.41	83.22	96.81	92.18	53.07
80	E15_Db	KnownBoundary	0	182.29	107.77	125.87	126.46	60.81	137.86	61.35
81	ER15d	ExonRegion	0	96.08	98.56	72.03	116.21	115.46	100.48	30.18