Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	PRPF18	Gene	0	109.59	98.00	131.55	123.47	56.26	95.39	64.73
2	378572	Transcript	0	21.35	28.99	25.36	44.01	8.52	34.40	17.52
3	320054	Transcript	0	4.26	11.79	4.98	7.04	1.86	3.89	4.04
4	298451	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	378544	Transcript	0	0.00	0.00	0.00	1.20	0.00	0.00	0.00
6	ER1a	ExonRegion	0	2.25	2.88	3.59	1.66	3.21	2.08	1.28
7	ER1b	ExonRegion	0	75.38	57.27	68.58	79.86	23.78	75.22	37.36
8	E1_Ac	KnownBoundary	0	24.83	32.89	34.83	32.97	4.15	39.32	10.58
9	ER1c	ExonRegion	0	23.30	65.48	29.07	80.79	6.50	69.98	20.31
10	E1b_E3a	KnownJunction	0	0.88	9.98	1.39	8.40	0.00	1.37	0.89
11	E1b_E4a	KnownJunction	0	50.50	80.21	60.34	127.60	18.58	95.46	46.59
12	ER1d	ExonRegion	0	60.71	91.92	76.54	127.61	16.47	101.76	52.84
13	E2a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	E3_Aa	NovelBoundary	1	99.47	35.07	151.10	92.98	1750.68	51.43	123.06
16	ER3a	ExonRegion	0	7.63	13.59	8.56	5.68	3.72	6.42	7.19
17	E3_Da	NovelBoundary	0	3833.49	2350.09	4708.14	4299.82	4113.85	3297.26	4526.61
18	E3a_E4a	KnownJunction	0	7.24	10.98	7.24	5.96	10.95	3.59	7.24
19	ER3b	ExonRegion	0	10.07	13.73	10.77	5.99	12.31	9.56	9.48
20	ER4a	ExonRegion	0	157.51	128.18	187.70	164.04	72.22	160.78	86.62
21	E4a_E6a	KnownJunction	0	209.93	152.16	242.14	170.27	140.69	195.91	85.72
22	E5a_E6a	KnownJunction	0	0.00	0.00	0.00	1.38	0.00	0.00	0.00
23	ER5a	ExonRegion	0	0.00	0.00	0.00	1.02	0.00	0.00	0.00
24	ER6a	ExonRegion	0	170.78	175.88	201.38	194.02	84.90	177.94	93.40
25	E6a_E7a	KnownJunction	0	147.26	189.18	218.56	211.93	59.25	177.33	102.84
26	ER7a	ExonRegion	0	205.66	172.68	233.76	209.34	92.98	137.55	111.47
27	E7a_E8a	KnownJunction	0	199.04	161.54	194.03	197.85	118.98	132.85	98.99
28	ER8a	ExonRegion	0	221.11	175.40	229.88	230.55	109.65	143.33	110.91
29	E8a_E9a	KnownJunction	0	214.72	157.58	236.90	224.37	92.74	166.40	88.44
30	ER9a	ExonRegion	0	196.96	160.84	217.14	208.70	94.05	157.67	94.89
31	E9_Da	NovelBoundary	0	177.63	141.60	175.30	185.01	88.20	136.22	86.98
32	E9b_E10a	KnownJunction	0	156.28	113.15	160.39	160.43	80.48	116.12	92.58
33	E9b_E11a	NovelJunction	1	25.19	14.27	31.03	42.70	11.64	13.59	7.48
34	E9b_E12a	NovelJunction	0	2.84	9.12	4.31	17.18	1.01	16.27	1.76
35	ER9b	ExonRegion	0	168.01	140.85	172.86	180.37	85.79	134.54	97.08
36	ER10a	ExonRegion	0	145.07	113.12	167.54	151.33	96.80	95.26	84.08
37	E10a_E11a	KnownJunction	0	108.72	104.01	144.49	146.29	63.03	86.38	94.70
38	ER11a	ExonRegion	0	127.51	122.14	179.42	157.50	81.44	109.57	94.35
39	E11a_E12a	KnownJunction	0	137.53	134.06	177.99	169.21	93.55	100.42	105.14
40	ER12a	ExonRegion	0	118.53	150.39	168.24	171.81	79.32	112.42	98.26
41	E12a_E13a	KnownJunction	0	113.98	156.08	170.32	174.30	71.00	116.90	92.05
42	ER13a	ExonRegion	0	107.06	106.56	153.00	143.84	63.76	108.10	79.74
43	E13_Da	KnownBoundary	0	93.55	71.69	149.57	119.39	54.29	103.80	51.97
44	ER13b	ExonRegion	0	83.27	48.89	102.42	69.39	24.58	88.89	34.57
45	E13_Db	KnownBoundary	0	17.91	4.10	27.85	12.43	5.97	23.42	9.89
46	ER13c	ExonRegion	0	11.30	3.88	12.15	2.78	3.78	5.65	4.70
47	IG42	Intergenic	0	12.81	10.83	14.75	7.02	8.16	4.63	11.99
48	IG42_SR1	SilentIntergenicRegion	0	20.02	12.80	19.57	14.82	6.89	12.85	18.50
49	IG42_AR1	ActiveIntergenicRegion	0	8.84	15.04	10.09	11.33	5.87	7.08	10.68
50	IG42_SR2	SilentIntergenicRegion	0	11.62	19.17	12.36	9.07	6.28	4.56	12.80
51	IG42_AR2	ActiveIntergenicRegion	0	30.30	16.95	31.21	6.69	9.00	7.86	21.80
52	IG42_SR3	SilentIntergenicRegion	0	22.53	17.72	26.59	14.59	12.18	7.00	19.87
53	IG42_AR3	ActiveIntergenicRegion	0	17.16	13.06	22.96	8.67	8.53	5.56	18.16
54	IG42_SR4	SilentIntergenicRegion	0	17.35	9.86	17.38	6.17	9.24	3.81	18.76
55	IG42_AR4	ActiveIntergenicRegion	0	13.55	6.88	12.76	6.80	8.89	2.73	11.72
56	IG42_SR5	SilentIntergenicRegion	0	12.71	7.32	13.82	4.86	6.57	6.37	9.02
57	IG42_AR6	ActiveIntergenicRegion	0	16.40	12.37	14.24	9.38	9.37	10.15	18.53
58	IG42_AR7	ActiveIntergenicRegion	0	8.78	6.75	10.12	5.79	8.48	2.93	6.21
59	IG42_AR8	ActiveIntergenicRegion	0	7.39	7.97	10.86	4.83	8.29	2.20	6.37
60	IG42_SR8	SilentIntergenicRegion	0	5.31	9.90	7.18	3.54	7.46	2.80	8.96
61	IG42_AR9	ActiveIntergenicRegion	0	2.95	8.10	13.77	4.99	3.91	4.70	11.13
62	IG42_SR9	SilentIntergenicRegion	0	5.60	8.11	9.33	5.42	7.62	4.57	7.06