Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	DCLRE1C	Gene	0	39.11	22.14	29.09	10.18	32.40	12.85	16.26
2	378246	Transcript	0	0	0	0	0	0	0	0
3	378275	Transcript	0	0	0	0	0	0	0	0
4	396817	Transcript	0	0	0	0	0	0	0	0
5	378278	Transcript	0	0	0	0	0	0	0	0
6	378289	Transcript	0	1.70	1.85	1.84	0.64	0.95	0.32	1.02
7	378258	Transcript	0	0	0	0	0	0	0	0
8	357717	Transcript	0	0.00	0.00	0.00	0.00	0.00	1.26	0.00
9	378249	Transcript	0	1.03	0.00	0.79	1.60	0.00	0.00	0.00
10	378255	Transcript	0	0	0	0	0	0	0	0
11	378254	Transcript	0	0	0	0	0	0	0	0
12	378241	Transcript	0	1.03	4.05	0.89	3.60	0.00	0.00	0.00
13	378242	Transcript	0	4.47	5.03	3.42	3.13	0.57	3.94	2.08
14	ER1a	ExonRegion	0	0.10	2.89	0.56	1.82	0.00	0.00	0.67
15	E1_Ac	KnownBoundary	0	0.00	4.15	2.23	1.68	0.00	2.52	0.00
16	E1_Ad	KnownBoundary	1	3.66	9.17	4.60	1.68	5.30	0.00	6.39
17	ER1b	ExonRegion	0	1.32	8.16	1.35	2.49	2.20	2.45	3.37
18	ER1c	ExonRegion	0	2.23	10.57	2.24	2.49	4.13	2.45	3.71
19	E1_Ae	KnownBoundary	0	6.18	7.62	7.93	2.74	3.23	1.23	2.54
20	ER1d	ExonRegion	0	3.79	12.47	4.29	3.95	5.56	3.11	5.31
21	ER1e	ExonRegion	0	6.08	16.44	6.10	6.88	4.68	5.65	3.80
22	E1a_E2a	KnownJunction	0	1.64	12.69	3.66	4.33	2.24	9.30	3.78
23	E1a_E5a	KnownJunction	0	1.03	0.00	0.79	1.60	0.00	0.00	0.00
24	ER2a	ExonRegion	0	8.20	17.99	16.36	11.03	5.03	12.92	11.66
25	E2a_E3a	KnownJunction	0	6.19	1.39	1.45	8.83	6.36	2.81	2.41
26	E2a_E4a	KnownJunction	0	0.00	5.70	0.73	1.35	0.00	0.00	0.00
27	E2a_E5a	KnownJunction	0	8.06	11.45	19.00	6.72	2.35	7.02	14.35
28	E2a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	1.26	0.00
29	ER3a	ExonRegion	0	4.50	2.52	3.39	6.16	7.02	2.06	2.25
30	E3a_E5a	KnownJunction	0	3.39	2.86	2.85	2.82	1.98	1.23	3.11
31	ER4a	ExonRegion	0	4.87	5.71	3.10	3.79	2.23	5.35	0.42
32	E4a_E5a	KnownJunction	0	0.00	2.92	1.78	2.71	3.20	0.00	0.00
33	ER5a	ExonRegion	0	19.92	26.33	24.20	17.40	12.74	8.24	15.13
34	E5a_E6a	KnownJunction	0	2.79	4.07	0.89	1.44	1.18	2.71	0.83
35	E5a_E6b	KnownJunction	0	1.03	4.05	0.89	3.60	0.00	0.00	0.00
36	E5a_E7a	KnownJunction	1	21.90	29.63	16.17	10.70	15.19	6.27	10.79
37	ER6a	ExonRegion	0	4.69	7.22	4.54	5.87	1.73	3.80	0.71
38	E6_Ab	KnownBoundary	0	5.61	9.33	2.50	7.72	0.99	4.40	0.00
39	ER6b	ExonRegion	0	6.15	7.77	2.51	4.83	1.40	3.13	0.79
40	E6a_E7a	KnownJunction	0	4.47	4.99	1.45	2.55	0.00	2.73	0.00
41	ER7a	ExonRegion	0	25.42	33.27	21.02	10.16	9.21	9.52	15.14
42	E7a_E8a	KnownJunction	0	6.96	16.13	12.13	2.68	6.45	4.98	16.41
43	E7a_E9a	KnownJunction	0	6.49	3.02	4.80	1.54	0.00	3.30	2.31
44	ER8a	ExonRegion	0	10.46	21.24	15.37	4.39	11.87	7.60	14.84
45	E8a_E9a	KnownJunction	0	16.92	16.24	13.80	2.82	17.04	10.72	13.40
46	ER9a	ExonRegion	0	28.38	34.96	27.04	12.71	14.00	12.36	16.94
47	E9a_E10a	KnownJunction	0	26.57	33.50	23.12	8.99	17.29	11.77	8.73
48	ER10a	ExonRegion	0	38.04	36.18	35.19	9.45	16.92	21.83	17.43
49	E10a_E11a	KnownJunction	0	45.46	24.80	37.54	11.30	12.06	12.44	22.16
50	ER11a	ExonRegion	0	32.48	32.82	31.86	10.24	18.16	10.08	19.04
51	E11_Da	KnownBoundary	0	25.03	30.24	32.76	14.66	20.47	9.09	11.75
52	ER11b	ExonRegion	0	32.79	21.89	32.34	9.09	17.77	10.75	16.41
53	E11b_E12a	KnownJunction	0	37.62	19.70	34.49	8.91	12.29	16.05	21.64
54	ER12a	ExonRegion	0	35.49	31.91	38.69	10.23	17.75	16.96	28.37
55	E12a_E13a	KnownJunction	0	19.66	18.89	37.55	17.58	20.33	11.10	20.68
56	ER13a	ExonRegion	0	42.84	33.04	47.15	13.52	20.61	14.91	25.61
57	E13a_E14a	KnownJunction	1	30.79	22.99	48.10	20.24	11.78	2.60	15.86
58	ER14a	ExonRegion	0	29.14	22.88	45.88	13.17	12.16	7.16	15.75
59	E14a_E15b	KnownJunction	0	23.37	25.85	33.32	6.58	10.77	9.46	14.59
60	ER15a	ExonRegion	0	4.47	5.03	3.42	3.13	0.57	3.94	2.08
61	E15_Ab	KnownBoundary	0	2.77	7.38	0.89	0.00	0.00	3.94	1.59
62	ER15b	ExonRegion	0	48.63	25.91	46.67	13.32	20.26	20.76	21.79
63	E15a_E16a	KnownJunction	0	51.86	23.64	49.25	12.84	25.20	18.55	20.02
64	I15_AR1	ActiveIntronRegion	1	5.55	2.06	5.07	10.46	3.42	11.67	1.35
65	ER16a	ExonRegion	0	53.01	23.35	48.61	16.93	19.24	14.56	16.57
66	E16a_E17a	KnownJunction	0	37.39	13.37	32.18	14.20	18.42	10.51	14.85
67	E16a_E18a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
68	I16	Intron	0	5.34	5.62	6.12	4.53	27.66	4.62	4.84
69	I16_SR1	SilentIntronRegion	0	3.20	3.31	3.63	5.48	8.52	4.32	1.97
70	I16_AR1	ActiveIntronRegion	1	6.14	10.20	9.84	5.00	63.77	7.19	11.19
71	I16_AR2	ActiveIntronRegion	1	3.60	10.25	10.41	0.23	53.40	9.65	9.32
72	I16_SR2	SilentIntronRegion	1	12.25	8.91	11.13	2.09	54.93	3.77	8.56
73	I16_AR3	ActiveIntronRegion	0	4.25	5.57	5.49	3.57	30.08	3.88	4.65
74	E17_Aa	NovelBoundary	1	0.77	3.99	4.60	7.42	27.59	6.46	8.97
75	ER17a	ExonRegion	0	52.19	30.23	41.63	13.20	52.01	14.37	25.79
76	E17_Da	KnownBoundary	0	5.82	4.33	4.22	7.86	10.12	5.23	4.18
77	E17_Db	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
78	E17_Dc	KnownBoundary	0	7.14	5.73	3.91	3.90	3.09	1.42	3.08
79	ER17b	ExonRegion	0	6.55	2.72	4.18	4.62	8.00	1.08	1.67
80	ER17c	ExonRegion	0	6.30	6.80	4.47	4.24	11.01	3.68	2.97
81	ER17d	ExonRegion	0	25.54	14.46	23.03	14.83	49.47	13.58	16.04
82	E17_Dd	KnownBoundary	0	228.12	311.68	224.72	335.66	337.59	364.16	126.65
83	ER17e	ExonRegion	0	87.08	32.23	49.20	12.81	68.91	24.54	24.48
84	E17_De	NovelBoundary	0	11.37	10.88	21.89	5.28	34.58	3.78	12.75
85	I17	Intron	0	22.31	11.83	22.04	7.40	46.18	6.03	10.34
86	I17_SR1	SilentIntronRegion	0	9.36	6.16	7.79	1.02	19.78	1.14	5.11
87	I17_AR1	ActiveIntronRegion	0	19.92	11.68	27.46	7.43	44.89	6.97	12.48
88	I17_AR4	ActiveIntronRegion	0	23.68	12.02	19.85	7.52	47.33	5.71	9.46
89	Ix	Intron	0	15.44	6.87	14.39	3.07	17.04	3.80	5.97
90	Ix_AR2	ActiveIntronRegion	0	19.93	8.80	17.92	3.69	20.99	4.67	7.68
91	Ix_AR1	ActiveIntronRegion	0	13.63	4.51	10.27	3.30	5.61	2.07	3.48
92	ER18a	ExonRegion	0	3.40	3.69	3.67	1.27	1.91	0.63	2.03