Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	FRMD4A	Gene	0	37.09	54.12	33.89	16.77	46.97	82.09	15.34
2	357447	Transcript	0	0.00	0.00	0.00	0.00	0.86	0.00	0.00
3	378503	Transcript	0	0	0	0	0	0	0	0
4	342409	Transcript	0	1.43	2.09	0.64	1.38	1.08	1.27	0.30
5	378502	Transcript	0	0.01	0.00	0.00	0.33	0.44	0.00	0.00
6	358621	Transcript	0	0.26	0.13	0.00	0.00	0.63	0.00	0.00
7	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.97	0.00	0.00
8	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.90	0.00	0.00
9	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.72	0.00	0.00
10	E2_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	1.01	0.00	0.00
11	ER2b	ExonRegion	0	0.02	0.00	0.00	0.00	1.27	0.00	0.00
12	E2a_E5b	KnownJunction	0	0.00	0.00	0.00	0.00	1.18	0.00	0.00
13	I2_AR13	ActiveIntronRegion	1	15.16	12.86	0.35	0.00	9.66	2.45	4.20
14	I2_AR14	ActiveIntronRegion	1	33.78	13.89	1.35	0.00	6.65	1.44	5.00
15	I2_AR15	ActiveIntronRegion	1	27.89	13.24	1.35	0.00	2.02	1.84	4.92
16	ER3a	ExonRegion	0	0.67	3.49	0.22	1.39	0.70	1.57	0.00
17	E3a_E5b	KnownJunction	0	1.03	0.00	0.00	0.00	0.00	0.00	0.00
18	ER4a	ExonRegion	0	0.01	0.00	0.00	0.66	0.87	0.00	0.00
19	E4a_E5b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	ER5a	ExonRegion	0	0.26	0.13	0.00	0.00	0.63	0.00	0.00
21	ER5b	ExonRegion	1	12.52	33.46	1.26	0.00	21.54	2.02	1.00
22	E5a_E6a	KnownJunction	1	20.14	66.65	1.34	0.00	31.54	5.82	1.69
23	ER6a	ExonRegion	1	30.87	70.07	1.70	0.93	30.66	6.34	2.27
24	E6a_E7a	KnownJunction	1	40.54	75.29	2.87	3.36	30.50	10.64	4.53
25	ER7a	ExonRegion	1	47.41	95.88	2.10	3.92	46.66	7.90	5.09
26	E7a_E8a	KnownJunction	1	47.12	97.99	0.62	3.20	48.16	8.79	0.75
27	E8_Aa	NovelBoundary	1	19.84	0.00	0.50	0.00	2.05	0.00	0.00
28	ER8a	ExonRegion	1	50.55	124.00	3.12	5.85	47.43	13.17	0.81
29	E8a_E9a	KnownJunction	1	51.87	138.42	2.04	11.03	54.70	2.95	1.56
30	ER9a	ExonRegion	1	45.57	119.74	1.28	6.67	53.66	10.58	2.06
31	E9a_E10a	KnownJunction	1	31.89	60.00	0.70	0.00	41.73	8.95	1.72
32	E10a_E11a	KnownJunction	1	36.98	89.98	0.72	4.61	46.57	16.00	1.48
33	ER10a	ExonRegion	1	46.01	106.80	1.09	3.90	54.79	15.83	2.32
34	ER11a	ExonRegion	1	38.17	87.73	0.48	3.83	54.05	9.94	1.65
35	E11a_E12a	KnownJunction	1	29.77	70.30	0.00	1.68	44.19	6.46	0.59
36	ER12a	ExonRegion	1	37.63	75.65	1.10	2.32	58.79	17.72	1.27
37	E12a_E13a	KnownJunction	1	31.76	86.28	1.45	3.31	72.46	23.02	1.61
38	ER13a	ExonRegion	1	35.76	86.69	0.50	2.41	59.12	10.61	2.87
39	E13a_E14a	KnownJunction	1	33.78	70.01	0.00	2.71	63.00	2.20	3.35
40	ER14a	ExonRegion	1	35.51	78.64	1.06	4.69	60.00	8.44	3.78
41	E14a_E15a	KnownJunction	1	43.99	88.11	1.78	9.18	56.69	4.34	2.85
42	I14_AR5	ActiveIntronRegion	1	3.20	1.67	12.27	5.93	6.82	33.94	4.65
43	E15_Aa	NovelBoundary	1	4.97	2.84	44.98	21.92	25.43	78.47	9.90
44	ER15a	ExonRegion	0	47.69	90.78	41.09	20.11	79.64	106.87	17.02
45	E15a_E16a	KnownJunction	0	50.04	81.05	66.28	26.52	87.65	173.88	22.23
46	ER16a	ExonRegion	0	38.46	89.87	54.46	34.66	82.07	164.43	22.88
47	E16a_E17a	KnownJunction	0	43.56	98.07	58.66	35.22	87.44	167.87	23.83
48	ER17a	ExonRegion	0	24.09	83.15	39.27	31.02	71.76	131.92	24.44
49	E17_Da	KnownBoundary	0	2.67	3.18	0.57	1.44	2.90	2.79	0.89
50	E17a_E18a	KnownJunction	1	6.59	54.33	16.94	23.73	38.48	82.92	8.15
51	ER17b	ExonRegion	0	2.59	2.79	1.71	2.74	2.54	2.24	0.91
52	I17_AR3	ActiveIntronRegion	0	7.18	13.01	3.74	3.75	5.35	8.14	2.36
53	I17_AR4	ActiveIntronRegion	0	12.50	6.49	6.64	7.47	8.25	6.58	3.75
54	I17_SR4	SilentIntronRegion	0	12.51	11.12	8.73	4.54	8.72	8.65	3.64
55	I17_AR6	ActiveIntronRegion	0	8.34	11.65	8.47	5.85	5.13	5.15	2.85
56	I17_SR6	SilentIntronRegion	0	12.46	10.08	11.07	4.04	5.50	12.15	3.45
57	I17_AR7	ActiveIntronRegion	0	12.19	7.94	7.50	4.63	7.20	10.21	3.23
58	I17_AR11	ActiveIntronRegion	0	23.75	16.24	12.33	8.72	6.10	9.52	6.42
59	E18_Aa	NovelBoundary	0	10.48	5.83	10.95	5.69	2.74	4.29	7.15
60	ER18a	ExonRegion	0	29.08	82.27	48.87	25.97	64.52	150.28	19.06
61	E18_Da	NovelBoundary	0	3.09	8.17	9.63	10.38	2.97	6.99	7.38
62	E18a_E19a	KnownJunction	1	43.08	82.26	64.32	19.99	47.58	209.98	15.62
63	I18	Intron	0	13.65	7.17	8.28	5.20	1.87	5.13	4.59
64	I18_SR1	SilentIntronRegion	0	12.44	10.81	10.17	4.12	2.11	5.96	4.22
65	I18_AR1	ActiveIntronRegion	0	12.99	12.05	10.25	4.23	2.17	5.73	6.16
66	I18_AR2	ActiveIntronRegion	0	16.75	5.52	10.20	5.27	1.91	5.41	4.46
67	I18_AR3	ActiveIntronRegion	0	13.24	5.22	8.23	4.88	2.45	3.99	2.80
68	I18_AR4	ActiveIntronRegion	0	16.34	6.99	8.21	8.78	2.35	8.14	7.23
69	I18_SR4	SilentIntronRegion	0	17.23	7.14	7.90	5.35	1.67	4.96	4.12
70	E19_Aa	NovelBoundary	1	32.26	21.70	10.00	8.91	1.82	4.82	11.54
71	ER19a	ExonRegion	0	66.69	104.36	81.53	29.17	71.64	188.55	26.41
72	E19_Da	NovelBoundary	0	53.01	21.33	33.83	16.12	4.47	13.27	13.70
73	E19a_E20a	KnownJunction	0	74.80	100.15	104.89	32.10	114.64	187.60	29.58
74	I19_AR4	ActiveIntronRegion	0	12.66	13.34	13.26	7.73	1.29	8.97	6.22
75	ER20a	ExonRegion	0	97.18	110.63	118.30	36.91	116.78	231.32	33.43
76	E20a_E21a	KnownJunction	0	43.16	67.65	70.14	25.44	59.87	166.72	20.85
77	E20a_E22a	NovelJunction	1	19.46	22.88	26.84	21.35	38.61	57.14	2.38
78	ER21a	ExonRegion	0	80.39	124.90	101.67	28.24	89.23	231.26	28.01
79	E21a_E22a	KnownJunction	0	96.70	148.33	104.76	31.70	132.97	237.45	31.57
80	E22_Aa	NovelBoundary	1	0.00	8.83	1.22	3.12	1.18	5.47	10.88
81	ER22a	ExonRegion	0	68.78	127.47	82.77	40.26	88.19	219.77	31.63
82	E22_Da	NovelBoundary	0	4.96	5.81	5.62	8.91	3.14	5.92	6.65
83	E22a_E23a	KnownJunction	0	35.28	96.13	55.50	23.46	36.19	166.69	15.08
84	ER23a	ExonRegion	0	70.30	80.77	59.01	29.56	72.90	146.45	23.73
85	E23a_E24a	KnownJunction	0	51.56	65.73	49.61	34.08	58.25	126.79	19.79
86	ER24a	ExonRegion	0	25.19	57.25	20.45	19.09	31.74	86.11	12.95
87	E24a_E25a	KnownJunction	0	56.83	117.64	44.71	33.08	59.04	201.86	32.26
88	I24	Intron	1	12.43	16.23	9.33	8.45	7.20	8.26	8.37
89	I24_AR2	ActiveIntronRegion	0	11.74	10.97	8.21	6.13	8.01	3.22	3.48
90	I24_AR3	ActiveIntronRegion	1	20.10	23.88	15.34	14.46	8.41	14.27	17.95
91	I24_SR3	SilentIntronRegion	0	14.98	16.06	10.70	9.80	8.27	10.11	6.11
92	I24_AR4	ActiveIntronRegion	1	11.80	17.36	8.29	9.24	7.39	8.60	7.40
93	I24_SR4	SilentIntronRegion	1	3.56	20.49	5.91	4.39	5.44	8.20	8.80
94	E25_Aa	NovelBoundary	0	10.25	18.52	8.61	2.52	5.28	8.44	7.61
95	ER25a	ExonRegion	0	41.41	94.70	44.99	33.81	135.97	178.39	26.07
96	E25_Da	NovelBoundary	0	16.84	32.73	13.49	10.02	4.86	18.38	10.52
97	E25a_E26a	KnownJunction	0	9.33	49.00	7.07	11.54	14.32	37.04	4.44
98	E25a_E27a	NovelJunction	0	44.98	39.49	47.18	13.68	115.15	83.00	20.61
99	I25	Intron	1	18.54	20.30	11.78	8.57	7.32	7.53	15.22
100	I25_AR1	ActiveIntronRegion	1	18.70	26.91	12.61	10.25	8.25	8.02	19.69
101	I25_SR1	SilentIntronRegion	1	13.96	15.52	9.00	8.54	5.70	6.67	12.02
102	I25_AR2	ActiveIntronRegion	1	21.75	18.04	13.10	7.14	7.70	7.75	13.65
103	E26_Aa	NovelBoundary	0	30.33	13.53	18.71	8.64	11.73	5.07	13.77
104	ER26a	ExonRegion	1	15.40	55.62	6.57	11.17	21.70	48.88	2.89
105	E26_Da	NovelBoundary	1	19.08	19.78	4.60	10.38	5.67	18.63	12.34
106	E26_Db	NovelBoundary	0	13.94	13.19	5.88	5.69	3.41	4.53	7.67
107	E26b_E27a	KnownJunction	1	12.32	40.62	3.88	9.59	3.92	52.55	3.71
108	ER26b	ExonRegion	0	16.14	50.42	10.50	16.83	10.53	60.07	4.72
109	I26	Intron	0	25.31	17.54	14.96	6.94	8.82	11.18	10.43
110	I26_AR1	ActiveIntronRegion	1	32.06	20.61	14.22	10.37	14.25	13.59	12.61
111	I26_AR2	ActiveIntronRegion	1	17.39	16.05	11.24	6.36	6.07	9.78	10.47
112	I26_SR2	SilentIntronRegion	1	17.28	16.04	9.34	3.95	5.85	12.83	12.71
113	I26_AR3	ActiveIntronRegion	1	23.25	21.19	13.36	8.92	9.77	13.86	13.74
114	I26_SR3	SilentIntronRegion	0	35.87	18.27	20.37	6.46	13.57	19.44	10.26
115	I26_AR4	ActiveIntronRegion	0	34.21	15.39	21.84	6.00	14.23	18.04	10.79
116	I26_AR5	ActiveIntronRegion	0	29.87	17.69	17.51	7.20	9.09	11.95	10.20
117	I26_AR6	ActiveIntronRegion	1	19.24	30.44	12.49	8.62	10.34	9.53	9.81
118	I26_SR5	SilentIntronRegion	1	13.18	14.12	8.49	4.72	13.60	5.71	12.71
119	E27_Aa	NovelBoundary	0	18.16	34.91	11.57	6.04	13.58	19.46	8.54
120	ER27a	ExonRegion	0	44.72	46.37	41.85	18.33	51.25	85.98	20.03
121	ER27b	ExonRegion	0	2.95	2.23	3.16	2.49	5.67	2.04	0.11
122	IG42	Intergenic	0	12.81	10.83	14.75	7.02	8.16	4.63	11.99
123	IG42_SR9	SilentIntergenicRegion	0	5.60	8.11	9.33	5.42	7.62	4.57	7.06
124	IG42_AR9	ActiveIntergenicRegion	0	2.95	8.10	13.77	4.99	3.91	4.70	11.13
125	IG42_SR8	SilentIntergenicRegion	0	5.31	9.90	7.18	3.54	7.46	2.80	8.96
126	IG42_AR8	ActiveIntergenicRegion	0	7.39	7.97	10.86	4.83	8.29	2.20	6.37
127	IG42_AR7	ActiveIntergenicRegion	0	8.78	6.75	10.12	5.79	8.48	2.93	6.21
128	IG42_AR6	ActiveIntergenicRegion	0	16.40	12.37	14.24	9.38	9.37	10.15	18.53
129	IG42_SR5	SilentIntergenicRegion	0	12.71	7.32	13.82	4.86	6.57	6.37	9.02
130	IG42_AR4	ActiveIntergenicRegion	0	13.55	6.88	12.76	6.80	8.89	2.73	11.72
131	IG42_SR4	SilentIntergenicRegion	0	17.35	9.86	17.38	6.17	9.24	3.81	18.76
132	IG42_AR3	ActiveIntergenicRegion	0	17.16	13.06	22.96	8.67	8.53	5.56	18.16
133	IG42_SR3	SilentIntergenicRegion	0	22.53	17.72	26.59	14.59	12.18	7.00	19.87
134	IG42_AR2	ActiveIntergenicRegion	0	30.30	16.95	31.21	6.69	9.00	7.86	21.80
135	IG42_SR2	SilentIntergenicRegion	0	11.62	19.17	12.36	9.07	6.28	4.56	12.80
136	IG42_AR1	ActiveIntergenicRegion	0	8.84	15.04	10.09	11.33	5.87	7.08	10.68
137	IG42_SR1	SilentIntergenicRegion	0	20.02	12.80	19.57	14.82	6.89	12.85	18.50