Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	UPF2	Gene	0	78.47	51.08	117.67	77.53	144.48	65.38	78.87
2	313999	Transcript	0	2.57	3.84	1.78	2.91	5.07	3.75	0.85
3	357604	Transcript	0	0	0	0	0	0	0	0
4	379172	Transcript	0	23.13	14.97	26.12	18.52	27.27	13.75	18.47
5	356352	Transcript	0	1.83	1.57	0.28	0.98	1.15	0.28	0.88
6	397053	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	313977	Transcript	0	4.07	3.49	5.61	3.60	17.45	5.57	2.95
8	359268	Transcript	0	46.03	43.27	92.93	66.24	106.50	79.38	74.32
9	ER1a	ExonRegion	0	2.82	5.70	1.83	2.81	6.53	6.44	1.17
10	E1a_E3b	KnownJunction	0	4.24	5.83	3.52	5.93	8.69	4.82	1.39
11	ER2a	ExonRegion	0	57.33	33.24	58.39	67.62	112.62	55.11	66.04
12	E2a_E3b	KnownJunction	0	98.95	74.19	97.06	157.62	154.59	144.18	109.02
13	ER3a	ExonRegion	0	1.83	1.57	0.28	0.98	1.15	0.28	0.88
14	E3_Ab	KnownBoundary	0	0.00	0.00	0.88	0.00	0.00	0.00	0.00
15	E3_Ac	KnownBoundary	0	50.75	54.75	48.23	112.62	61.64	105.08	53.51
16	ER3b	ExonRegion	0	86.71	80.32	86.18	149.43	128.14	136.36	96.69
17	ER3c	ExonRegion	0	89.45	78.54	91.53	131.14	67.84	121.93	88.24
18	E3_Da	KnownBoundary	1	45.30	22.72	68.69	63.47	59.91	71.39	49.93
19	E3a_E3d	KnownJunction	0	7.79	0.00	9.80	0.00	0.00	0.00	0.00
20	E3_Db	KnownBoundary	0	54.79	34.60	53.39	68.84	48.43	65.45	37.12
21	E3b_E3e	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	E3b_E9a	NovelJunction	0	53.19	31.24	58.26	58.87	52.38	71.56	42.31
23	ER3d	ExonRegion	0	114.50	72.49	139.77	152.96	153.33	160.61	104.34
24	ER3e	ExonRegion	0	112.59	81.01	123.05	115.17	173.15	107.27	79.59
25	E3_Ad	KnownBoundary	0	64.04	37.91	61.43	38.42	91.61	46.10	32.88
26	E3_Ae	KnownBoundary	0	4.01	13.08	5.40	9.27	21.44	17.47	0.60
27	ER3f	ExonRegion	1	73.51	51.43	74.29	53.20	113.11	58.85	33.95
28	ER3g	ExonRegion	0	58.16	50.50	68.54	58.20	66.28	57.37	44.08
29	E3_Dc	KnownBoundary	0	88.04	80.05	116.27	103.05	102.95	76.70	89.14
30	ER3h	ExonRegion	0	108.68	89.63	151.33	112.71	99.13	86.27	100.46
31	E3d_E4a	KnownJunction	0	122.15	81.63	167.14	106.93	100.79	83.05	81.65
32	ER4a	ExonRegion	0	90.96	63.85	159.46	98.98	156.01	74.04	98.87
33	E4a_E6a	KnownJunction	0	96.33	52.36	108.47	71.01	143.92	65.87	74.87
34	I4_AR1	ActiveIntronRegion	0	22.19	7.38	12.89	5.27	4.38	1.63	3.15
35	I4_SR1	SilentIntronRegion	0	17.49	5.47	12.66	3.42	2.31	0.74	4.48
36	ER5a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
37	ER6a	ExonRegion	0	136.05	62.89	163.80	95.53	178.41	68.55	83.38
38	E6a_E7a	KnownJunction	0	116.13	53.20	167.76	92.06	206.62	76.41	72.99
39	ER7a	ExonRegion	0	113.29	51.34	165.32	83.04	177.25	56.33	80.83
40	E7a_E8a	KnownJunction	0	91.54	49.76	149.80	85.12	199.75	58.91	82.85
41	E7a_E9a	NovelJunction	0	2.62	11.40	7.54	8.59	1.06	9.19	2.09
42	ER8a	ExonRegion	0	83.73	46.80	130.61	73.59	174.20	58.04	87.41
43	E8a_E9a	KnownJunction	0	70.28	55.20	102.17	77.64	131.42	67.59	86.42
44	ER9a	ExonRegion	0	81.41	60.91	127.22	88.78	202.87	66.87	98.22
45	E9_Ab	KnownBoundary	0	78.98	63.39	125.87	90.48	245.70	74.42	95.17
46	E9a_E25b	KnownJunction	0	8.14	6.99	11.22	7.21	34.90	11.15	5.90
47	ER9b	ExonRegion	0	81.80	69.43	132.19	98.37	235.28	67.11	110.83
48	E9b_E10a	KnownJunction	0	83.42	70.59	115.08	96.23	208.97	62.85	122.06
49	E9b_E25c	KnownJunction	0	38.47	29.95	42.44	37.03	54.54	27.50	36.95
50	ER9c	ExonRegion	0	90.68	80.42	130.87	105.99	247.33	78.71	130.20
51	ER10a	ExonRegion	0	84.50	65.72	137.53	98.58	217.94	63.22	112.16
52	E10a_E11a	KnownJunction	0	88.59	61.71	143.37	80.70	183.06	48.13	87.38
53	ER11a	ExonRegion	0	105.13	70.02	159.24	81.00	236.48	62.11	119.57
54	E11a_E12a	KnownJunction	0	109.65	63.29	169.63	79.27	197.84	73.06	106.63
55	ER12a	ExonRegion	0	118.78	59.58	171.85	87.78	240.37	64.46	102.72
56	E12a_E13a	KnownJunction	0	115.14	34.86	166.32	84.28	179.63	85.54	100.45
57	ER13a	ExonRegion	0	105.51	60.04	151.52	95.52	172.49	66.98	92.89
58	E13a_E14a	KnownJunction	0	88.81	53.38	136.49	86.29	163.65	62.79	88.81
59	ER14a	ExonRegion	0	89.98	58.65	135.82	83.17	177.84	64.20	96.00
60	E14a_E15a	KnownJunction	0	71.33	57.04	100.38	57.38	148.51	64.96	85.17
61	ER15a	ExonRegion	0	95.75	52.91	147.14	73.61	184.46	62.33	82.79
62	E15a_E16a	KnownJunction	0	115.58	49.23	181.37	69.87	220.96	61.37	74.35
63	ER16a	ExonRegion	0	117.65	49.49	175.54	83.54	194.25	58.84	87.74
64	E16a_E17a	KnownJunction	0	101.17	40.12	146.85	53.59	152.24	41.08	79.93
65	E17_Aa	NovelBoundary	1	36.93	0.00	55.15	0.00	2.28	3.22	0.89
66	ER17a	ExonRegion	0	107.63	55.08	165.63	66.39	155.93	66.98	80.64
67	E17a_E18a	KnownJunction	0	118.68	47.37	204.30	70.30	166.40	84.29	82.95
68	ER18a	ExonRegion	0	101.32	58.10	164.73	90.73	141.84	77.83	79.79
69	E18a_E19a	KnownJunction	0	81.58	55.59	140.93	62.36	151.00	60.84	81.16
70	ER19a	ExonRegion	0	69.74	69.44	135.07	78.65	164.25	56.84	88.67
71	E19a_E20a	KnownJunction	0	69.90	66.20	131.16	97.58	188.99	68.63	99.49
72	ER20a	ExonRegion	0	73.00	63.50	130.93	99.29	216.70	63.37	110.06
73	E20a_E21a	KnownJunction	0	90.76	71.56	134.03	99.83	227.85	69.55	111.47
74	ER21a	ExonRegion	0	79.62	68.75	128.00	113.53	201.74	77.32	114.06
75	E21a_E22a	KnownJunction	0	120.47	81.57	158.29	123.86	292.29	92.43	129.23
76	ER22a	ExonRegion	0	82.58	72.43	139.86	113.27	264.18	93.35	132.43
77	E22_Da	KnownBoundary	1	16.31	24.98	47.90	33.70	60.33	37.60	50.53
78	E22a_E22b	KnownJunction	0	46.03	43.27	92.93	66.24	106.50	79.38	74.32
79	E22_Ab	KnownBoundary	1	15.42	23.59	39.45	26.60	85.78	29.13	29.02
80	ER22b	ExonRegion	0	55.33	61.55	111.09	106.41	184.11	85.00	116.25
81	ER22c	ExonRegion	0	67.60	62.87	121.27	105.34	183.27	85.49	110.04
82	E22_Db	NovelBoundary	0	58.58	46.37	94.93	86.56	144.73	56.68	82.84
83	E22c_E23a	KnownJunction	0	76.69	59.87	130.38	119.31	254.46	83.21	117.06
84	ER22d	ExonRegion	0	76.70	64.11	122.81	112.80	211.71	78.75	119.51
85	ER23a	ExonRegion	0	54.36	54.43	82.74	94.47	182.80	66.74	88.42
86	E23a_E25a	KnownJunction	0	52.42	47.50	84.34	84.69	166.28	53.06	82.82
87	ER24a	ExonRegion	0	0.66	0.00	0.00	0.00	0.00	0.00	0.00
88	ER25a	ExonRegion	0	54.66	51.39	73.97	88.25	140.84	61.19	79.64
89	E25_Ab	KnownBoundary	0	37.54	31.92	41.90	50.99	46.31	37.76	33.51
90	E25_Ac	KnownBoundary	0	40.91	32.71	58.42	33.38	83.70	27.95	39.31
91	ER25b	ExonRegion	0	73.00	65.60	85.21	97.51	136.54	72.33	76.09
92	ER25c	ExonRegion	0	67.75	66.95	100.46	95.77	150.87	73.58	85.51
93	E25_Da	KnownBoundary	0	65.37	68.17	99.01	98.21	152.86	69.33	90.95
94	ER25d	ExonRegion	0	67.01	40.60	95.39	61.97	120.34	81.67	68.04
95	ER25e	ExonRegion	0	2.31	2.43	5.42	2.49	8.10	1.23	4.05
96	IG26_AR3	ActiveIntergenicRegion	0	2.63	5.34	1.33	0.94	1.09	1.84	22.91
97	IG26_AR1	ActiveIntergenicRegion	0	8.30	3.04	8.84	0.00	3.18	1.93	29.77
98	IG26_SR1	SilentIntergenicRegion	0	1.34	1.98	1.27	0.00	0.15	0.00	9.32