Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	KIAA1217	Gene	0	248.81	421.65	239.86	397.84	43.73	680.35	63.08
2	376462	Transcript	0	0.00	0.01	0.00	0.00	0.00	0.00	0.00
3	376456	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	376454	Transcript	0	0	0	0	0	0	0	0
5	323059	Transcript	0	0	0	0	0	0	0	0
6	376452	Transcript	0	0	0	0	0	0	0	0
7	307544	Transcript	1	2.57	1.66	2.83	2.55	0.31	26.39	0.16
8	396446	Transcript	0	0	0	0	0	0	0	0
9	376451	Transcript	0	0	0	0	0	0	0	0
10	396445	Transcript	1	7.33	37.31	66.56	223.34	1.18	672.14	12.50
11	IG29_AR1	ActiveIntergenicRegion	0	13.52	3.07	5.33	0.46	0.21	3.17	1.31
12	IG29_SR1	SilentIntergenicRegion	0	16.21	5.60	10.52	0.00	1.28	8.24	1.03
13	IG29_SR2	SilentIntergenicRegion	0	9.54	3.12	5.02	0.98	0.46	1.68	0.43
14	IG29_AR2	ActiveIntergenicRegion	0	20.45	4.46	9.71	2.00	0.00	1.46	0.55
15	IG29_AR3	ActiveIntergenicRegion	0	15.97	1.81	7.52	1.17	0.00	1.65	0.39
16	IG29_SR3	SilentIntergenicRegion	0	12.25	2.52	7.34	0.69	0.60	0.51	0.56
17	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	ER2a	ExonRegion	0	0.02	0.04	0.01	0.01	0.01	0.00	0.00
20	E2a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	ER3a	ExonRegion	0	11.01	26.05	10.61	19.96	5.70	10.42	0.32
22	E3a_E4a	KnownJunction	1	36.97	92.53	35.14	71.25	20.40	27.71	0.00
23	ER4a	ExonRegion	1	50.32	105.80	56.32	89.82	23.17	36.21	1.10
24	E4a_E5a	KnownJunction	1	33.71	72.22	33.93	55.35	26.79	24.92	0.00
25	I4_AR4	ActiveIntronRegion	0	24.98	9.67	18.93	12.26	9.17	4.27	0.76
26	ER5a	ExonRegion	1	65.24	124.66	67.49	113.81	23.10	31.51	16.24
27	E5a_E6a	KnownJunction	1	75.12	119.75	90.88	133.15	33.15	37.20	28.28
28	ER6a	ExonRegion	1	129.95	181.00	151.65	182.43	45.24	53.97	59.09
29	E6a_E7a	KnownJunction	1	177.80	200.53	218.21	206.30	45.58	74.42	98.82
30	ER7a	ExonRegion	1	155.76	182.67	171.51	210.30	49.95	66.92	72.30
31	E7a_E10a	KnownJunction	1	101.88	130.39	120.34	177.50	31.44	29.45	40.47
32	ER8a	ExonRegion	0	5.15	3.33	4.99	3.63	0.62	23.80	0.31
33	E8a_E10a	KnownJunction	1	0.00	0.00	0.66	1.46	0.00	28.97	0.00
34	E9_Aa	NovelBoundary	0	83.32	150.82	108.87	118.36	0.00	128.24	17.05
35	ER9a	ExonRegion	1	259.04	773.89	310.32	594.19	0.16	1306.17	41.32
36	E9a_E10a	KnownJunction	0	167.02	744.66	206.36	449.09	0.00	1242.97	39.17
37	ER10a	ExonRegion	0	406.20	958.42	407.90	915.41	54.60	1420.99	117.76
38	E10_Da	NovelBoundary	1	41.52	116.54	26.53	39.34	2.10	36.47	7.70
39	E10a_E11a	KnownJunction	1	62.04	54.93	25.46	24.11	2.19	30.04	11.78
40	E10a_E12a	KnownJunction	0	231.24	781.15	328.71	815.71	27.99	1260.21	70.20
41	E10a_E13a	NovelJunction	1	0.95	36.99	4.10	6.69	0.00	20.29	0.70
42	I10_SR1	SilentIntronRegion	0	55.99	65.06	39.87	28.53	1.96	21.76	3.14
43	I10_SR2	SilentIntronRegion	1	91.86	41.52	35.87	22.88	5.58	19.44	1.56
44	I10_AR4	ActiveIntronRegion	0	76.15	40.57	37.23	36.55	2.22	37.22	5.84
45	I10_AR6	ActiveIntronRegion	1	51.00	70.92	19.52	89.63	0.00	83.90	6.07
46	I10_SR7	SilentIntronRegion	0	51.23	76.13	22.47	87.29	0.00	86.02	5.62
47	I10_AR7	ActiveIntronRegion	0	44.72	72.65	19.92	83.55	0.00	82.14	4.86
48	I10_SR8	SilentIntronRegion	0	47.39	71.07	21.11	81.26	1.35	83.98	4.72
49	ER11a	ExonRegion	1	101.12	73.40	42.94	57.34	4.67	80.64	9.22
50	E11a_E12a	KnownJunction	1	99.91	65.02	28.88	30.10	5.37	67.35	7.65
51	ER12a	ExonRegion	0	300.67	840.95	343.12	810.75	38.32	1238.85	92.80
52	E12a_E13a	KnownJunction	0	206.91	684.87	248.38	681.04	31.14	1007.08	83.35
53	E12a_E14a	NovelJunction	1	3.57	2.26	5.71	33.59	0.00	16.37	0.00
54	ER13a	ExonRegion	0	188.26	614.14	215.85	626.95	34.38	911.55	74.24
55	E13a_E14a	KnownJunction	0	169.55	555.12	171.74	637.35	18.60	914.52	55.98
56	ER14a	ExonRegion	0	278.42	691.57	324.32	787.45	46.20	1082.73	86.47
57	E14a_E15a	KnownJunction	0	294.74	638.58	350.92	754.35	55.74	1069.55	79.77
58	E14a_E18a	NovelJunction	1	7.34	16.95	2.13	3.12	0.00	11.66	0.00
59	ER15a	ExonRegion	0	285.07	699.54	341.09	762.81	47.01	1016.65	100.22
60	E15a_E16a	KnownJunction	0	342.74	671.76	377.42	707.35	58.00	1153.76	116.44
61	E15a_E17a	NovelJunction	1	4.19	4.44	2.47	42.72	0.00	6.59	0.00
62	ER16a	ExonRegion	0	257.24	691.12	304.29	705.92	48.48	1053.16	114.77
63	E16a_E17a	KnownJunction	0	257.68	639.87	307.87	600.04	34.03	1021.77	119.81
64	ER17a	ExonRegion	1	189.97	599.83	229.63	647.76	36.81	1002.39	101.72
65	E17a_E18a	KnownJunction	0	188.88	566.46	257.24	603.73	25.80	1031.87	60.12
66	ER18a	ExonRegion	0	262.58	623.43	315.50	679.20	36.20	1192.98	76.09
67	E18a_E19a	KnownJunction	0	320.86	539.12	353.18	617.57	34.12	1129.13	84.67
68	ER19a	ExonRegion	0	269.90	553.54	270.71	646.88	36.47	1152.22	74.62
69	E19a_E21a	KnownJunction	0	239.35	441.60	234.01	529.98	40.09	1062.66	83.52
70	ER20a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
71	ER21a	ExonRegion	0	311.29	523.63	273.64	662.77	38.16	1321.48	81.46
72	E21a_E22a	KnownJunction	1	418.92	376.86	324.60	478.59	43.32	1222.26	74.75
73	E21a_E23a	NovelJunction	0	51.67	50.13	57.91	107.69	7.54	104.65	7.57
74	E21a_E25a	KnownJunction	1	0.00	5.20	8.67	82.44	1.18	122.61	0.72
75	ER22a	ExonRegion	0	428.28	403.78	343.86	464.42	53.63	1132.96	73.24
76	E22a_E23a	KnownJunction	1	591.76	343.37	349.01	214.51	49.45	387.71	68.36
77	E22a_E25a	KnownJunction	1	7.33	37.31	66.56	223.34	1.18	672.14	12.50
78	I22	Intron	0	53.88	51.89	52.19	42.88	4.18	36.35	4.70
79	I22_SR1	SilentIntronRegion	0	51.86	51.71	51.79	42.76	3.89	37.50	4.53
80	I22_AR2	ActiveIntronRegion	0	53.65	75.63	50.51	56.92	5.58	36.90	4.58
81	I22_AR4	ActiveIntronRegion	0	52.58	79.49	51.38	49.88	5.67	44.31	6.07
82	I22_AR5	ActiveIntronRegion	0	71.74	93.54	67.84	65.64	7.46	57.45	6.12
83	I22_SR2	SilentIntronRegion	0	88.70	67.61	70.68	56.01	5.63	49.90	6.01
84	I22_AR6	ActiveIntronRegion	0	73.09	45.75	67.51	43.86	5.68	34.59	7.17
85	E23_Aa	NovelBoundary	1	235.61	103.90	174.59	95.74	7.86	91.71	6.74
86	ER23a	ExonRegion	1	706.72	464.59	455.64	326.67	70.82	489.46	70.34
87	E23_Da	NovelBoundary	1	65.07	64.81	76.55	64.80	6.73	34.84	4.44
88	E23a_E24a	KnownJunction	1	573.75	390.95	407.90	275.06	82.09	314.66	56.78
89	E23a_E25a	KnownJunction	1	7.91	21.81	15.88	49.71	0.90	141.99	1.19
90	E24_Aa	NovelBoundary	1	64.99	56.40	66.25	65.91	5.12	36.55	5.96
91	ER24a	ExonRegion	0	530.51	647.90	465.59	425.95	96.47	581.51	105.44
92	E24_Da	NovelBoundary	0	58.08	83.94	73.76	139.44	9.11	117.89	8.28
93	E24a_E25a	KnownJunction	0	174.74	355.77	159.70	187.15	50.35	386.80	47.37
94	I24	Intron	0	58.04	116.58	75.46	132.70	8.36	156.17	17.10
95	I24_AR1	ActiveIntronRegion	0	58.27	117.03	75.74	133.20	8.40	156.77	17.17
96	E25_Aa	NovelBoundary	0	62.02	147.83	66.75	154.37	11.66	184.36	22.06
97	ER25a	ExonRegion	0	346.38	653.47	359.42	740.45	85.16	1741.05	99.07
98	E25_Da	KnownBoundary	0	160.42	228.33	91.09	103.92	5.62	161.09	18.62
99	E25a_E25b	KnownJunction	1	271.61	553.57	436.00	832.97	45.81	2001.46	127.02
100	ER25b	ExonRegion	1	190.12	225.06	98.66	130.98	7.84	171.20	20.80
101	E25_Db	KnownBoundary	0	205.32	194.49	124.38	128.95	18.49	120.52	22.73
102	ER25c	ExonRegion	1	228.93	203.06	147.01	144.65	12.97	146.81	27.59
103	E25_Dc	KnownBoundary	0	207.17	163.99	126.40	140.06	6.78	155.12	20.26
104	ER25d	ExonRegion	0	120.45	154.73	72.06	125.18	7.55	107.40	18.78
105	E25_Ab	KnownBoundary	0	131.43	123.82	71.43	116.60	5.28	113.04	13.29
106	ER25e	ExonRegion	0	210.86	308.34	221.84	379.10	51.66	920.65	61.50
107	ER25f	ExonRegion	0	0.77	1.21	0.68	0.00	0.00	7.36	0.00