Order SeqName SeqType IsAE Lum_Epi Lum_Epi2 Myo_Epi Myo_Epi2 hESCs StemLike vHMECs 1 WAC Gene 0 553.12 649.59 655.87 875.60 611.97 1018.58 317.53 2 375664 Transcript 0 0.99 2.26 0.77 2.40 3.12 6.31 1.01 3 375646 Transcript 0 38.15 40.46 49.97 65.97 32.97 99.88 15.21 4 347934 Transcript 0 0 0 0 0 0 0 0 5 345541 Transcript 0 0 0 0 0 0 0 0 6 354911 Transcript 0 0 0 0 0 0 0 0 7 338396 Transcript 0 208.44 421.45 244.74 545.91 0.00 523.08 177.05 8 IG16_AR7 ActiveIntergenicRegion 0 4.50 2.73 3.81 0.53 8.13 1.30 10.47 9 IG16_AR8 ActiveIntergenicRegion 0 3.63 2.74 2.02 0.71 5.36 2.38 7.42 10 ER1a ExonRegion 0 0.99 2.26 0.77 2.40 3.12 6.31 1.01 11 ER1b ExonRegion 0 24.84 48.80 27.02 39.64 14.73 72.20 16.80 12 E1a_E3a KnownJunction 1 36.67 49.50 43.00 29.50 27.55 77.26 20.34 13 ER2a ExonRegion 0 35.21 139.11 47.05 177.87 63.91 170.81 17.73 14 E2a_E3a KnownJunction 0 67.98 292.30 106.14 308.70 202.96 318.70 52.11 15 ER3a ExonRegion 0 136.99 298.59 223.34 368.22 250.53 401.99 97.65 16 E3a_E4a KnownJunction 0 170.39 266.44 289.40 358.47 243.12 364.74 107.61 17 ER4a ExonRegion 0 472.67 944.26 737.50 1119.09 398.98 1369.03 296.52 18 E4a_E5a KnownJunction 0 691.55 1103.01 1060.50 1251.01 590.29 1615.38 393.45 19 I4_AR2 ActiveIntronRegion 0 126.46 20.60 121.63 30.39 26.83 21.58 19.75 20 I4_AR3 ActiveIntronRegion 1 117.59 22.27 99.61 14.82 28.04 17.58 11.67 21 I4_SR3 SilentIntronRegion 0 138.11 13.11 94.54 16.17 27.74 20.52 14.75 22 ER5a ExonRegion 0 709.59 1137.33 1087.34 1406.75 709.00 1792.20 436.45 23 E5a_E6a KnownJunction 0 617.68 1026.64 1029.17 1457.80 741.43 1633.95 387.77 24 ER6a ExonRegion 0 604.20 1110.49 1028.37 1451.99 673.27 1616.57 437.91 25 E6a_E7a KnownJunction 0 493.25 1129.96 919.69 1554.84 512.37 1743.08 454.22 26 ER7a ExonRegion 0 607.61 1165.59 1006.71 1529.60 807.08 1697.04 540.42 27 E7a_E8a KnownJunction 0 496.84 949.42 668.95 1253.59 1030.99 1441.32 412.73 28 E7a_E9a KnownJunction 0 133.49 114.33 256.09 225.70 113.72 141.64 110.28 29 ER8a ExonRegion 0 708.06 1129.21 943.63 1401.25 956.91 1659.56 551.74 30 E8a_E9a KnownJunction 0 624.45 895.15 711.83 1086.14 694.93 1342.78 416.31 31 ER9a ExonRegion 0 900.48 903.66 1016.77 1223.06 1055.94 1378.13 524.84 32 E9a_E10a KnownJunction 0 1186.90 806.93 1143.65 1196.94 1059.69 1399.89 540.57 33 E9a_E10b KnownJunction 0 38.15 40.46 49.97 65.97 32.97 99.88 15.21 34 E10_Ab NovelBoundary 0 716.00 543.56 669.99 748.72 563.37 920.04 310.09 35 ER10a ExonRegion 0 1181.62 879.93 1131.91 1249.46 1049.13 1515.43 544.24 36 ER10b ExonRegion 0 1065.01 904.51 987.26 1253.11 1012.02 1457.26 507.25 37 E10a_E11a KnownJunction 0 857.58 723.28 839.66 951.79 848.37 1053.34 520.89 38 E11_Ab NovelBoundary 0 1056.01 900.35 1019.22 1271.63 1182.10 1591.88 518.83 39 ER11a ExonRegion 0 965.41 824.84 961.18 1122.47 1105.65 1349.47 573.21 40 ER11b ExonRegion 0 854.66 850.22 827.15 1139.12 1082.71 1270.38 499.54 41 E11a_E12a KnownJunction 0 652.58 793.16 656.14 1002.72 779.35 1184.55 472.56 42 ER12a ExonRegion 0 472.68 753.90 544.21 969.05 729.80 1017.76 398.13 43 E12_Da KnownBoundary 0 146.00 332.02 210.37 433.76 258.56 402.13 149.23 44 E12a_E12b KnownJunction 0 208.44 421.45 244.74 545.91 0.00 523.08 177.05 45 E12_Ab KnownBoundary 0 186.11 297.05 216.85 414.11 277.95 370.64 156.01 46 ER12b ExonRegion 0 344.87 744.95 452.76 941.71 659.38 952.11 348.22 47 ER12c ExonRegion 0 388.21 691.31 462.39 893.54 700.37 861.82 334.28 48 E12b_E13a KnownJunction 0 393.82 574.11 435.90 744.65 669.59 739.59 300.36 49 E12b_E14a NovelJunction 1 7.86 19.02 10.26 36.65 2.05 15.60 2.52 50 ER13a ExonRegion 0 598.52 741.27 639.62 985.22 837.78 1031.68 407.55 51 E13_Da KnownBoundary 0 603.06 611.73 648.69 943.53 699.31 875.15 315.65 52 ER13b ExonRegion 0 662.95 612.65 652.35 843.40 709.77 807.59 294.88 53 E13b_E14a KnownJunction 0 581.18 639.68 633.32 929.79 745.67 910.01 303.47 54 ER14a ExonRegion 0 702.01 538.56 749.83 807.62 757.07 863.92 292.76 55 E14a_E15a KnownJunction 0 829.22 549.62 761.25 839.20 749.03 881.10 277.20 56 ER15a ExonRegion 0 705.92 514.16 705.54 815.70 584.46 869.44 260.95 57 E15_Da KnownBoundary 0 232.51 97.41 292.25 191.07 109.04 287.86 73.82 58 ER15b ExonRegion 0 447.87 473.90 533.50 675.40 439.82 907.95 232.10 59 E15_Db KnownBoundary 0 381.68 290.35 400.49 497.74 621.94 591.50 195.04 60 ER15c ExonRegion 0 214.67 152.49 239.39 267.41 332.63 369.55 124.41 61 IG17_AR1 ActiveIntergenicRegion 0 69.57 108.02 79.05 172.21 98.39 268.55 53.53 62 IG17_SR2 SilentIntergenicRegion 0 3.91 1.32 6.06 2.85 13.58 3.99 3.73