Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	MLLT10	Gene	0	75.79	28.86	87.30	19.45	183.37	19.72	33.59
2	377100	Transcript	1	10.85	6.62	11.18	5.61	42.44	4.85	25.78
3	377072	Transcript	0	8.70	4.60	6.24	3.93	24.44	2.81	3.20
4	377059	Transcript	0	21.80	17.44	40.58	7.80	112.01	4.58	17.13
5	377091	Transcript	0	11.03	3.19	8.84	1.01	16.05	1.99	9.53
6	396529	Transcript	0	0	0	0	0	0	0	0
7	307729	Transcript	0	0.96	0.00	0.06	0.00	1.73	0.00	0.81
8	ER1a	ExonRegion	0	0.00	0.15	0.04	0.55	0.48	0.00	0.00
9	E1_Ab	KnownBoundary	0	0.00	1.34	0.57	0.00	1.06	0.00	0.00
10	ER1b	ExonRegion	0	4.72	5.83	5.44	2.12	20.37	1.01	4.10
11	E1a_E2a	KnownJunction	1	13.34	21.04	21.48	7.53	36.82	4.64	12.74
12	ER2a	ExonRegion	0	21.72	28.15	25.80	16.29	49.13	10.88	23.27
13	E2a_E3a	KnownJunction	0	55.46	36.86	75.31	22.40	103.85	18.22	56.06
14	ER3a	ExonRegion	0	59.31	32.30	65.39	18.50	177.58	13.59	46.14
15	E3a_E4a	KnownJunction	0	0.00	7.15	0.00	0.00	3.99	0.00	3.22
16	E3a_E5a	KnownJunction	0	10.85	6.62	11.18	5.61	42.44	4.85	25.78
17	E3a_E6a	KnownJunction	0	31.23	12.95	33.11	8.89	162.48	7.45	21.80
18	I3_AR5	ActiveIntronRegion	1	9.55	2.43	0.68	0.00	5.21	0.00	9.06
19	ER4a	ExonRegion	0	2.36	4.49	1.75	0.00	17.66	0.00	3.28
20	E4_Da	NovelBoundary	0	2147.53	1371.29	1540.03	1116.78	1072.93	1111.31	1200.61
21	E4a_E5a	KnownJunction	0	0.00	1.58	0.00	0.00	1.80	0.00	1.68
22	ER5a	ExonRegion	1	21.96	17.25	13.41	7.55	42.04	8.69	52.19
23	E5_Da	KnownBoundary	1	29.74	24.14	18.78	7.69	39.35	10.80	65.44
24	ER5b	ExonRegion	0	26.12	10.01	15.42	4.01	40.95	6.44	34.22
25	E5_Db	KnownBoundary	0	19.71	3.02	16.02	0.00	27.25	4.23	19.09
26	ER5c	ExonRegion	0	11.03	3.19	8.84	1.01	16.05	1.99	9.53
27	E5_Dc	NovelBoundary	0	16.16	2.44	6.77	2.57	12.19	0.00	13.50
28	ER6a	ExonRegion	0	48.37	21.27	61.26	12.22	136.33	11.55	29.22
29	E6a_E7a	KnownJunction	0	67.56	27.06	82.83	14.68	128.27	18.12	30.73
30	ER7a	ExonRegion	0	79.63	38.05	102.88	23.77	156.28	19.58	30.45
31	E7_Da	NovelBoundary	1	9.78	3.55	23.57	5.04	11.57	0.00	4.79
32	E7a_E8a	KnownJunction	0	67.51	40.62	80.39	23.70	146.09	16.00	26.93
33	I7_AR1	ActiveIntronRegion	1	8.80	4.18	17.49	2.93	12.26	3.15	9.08
34	I7_AR3	ActiveIntronRegion	1	6.37	0.35	6.77	0.00	16.08	0.00	11.37
35	I7_AR4	ActiveIntronRegion	1	7.19	1.68	7.86	0.66	15.32	0.86	10.86
36	I7_SR3	SilentIntronRegion	1	6.11	1.49	5.47	0.53	11.90	1.30	7.56
37	I7_AR5	ActiveIntronRegion	1	7.48	5.19	13.50	2.31	16.14	3.61	14.14
38	I7_AR6	ActiveIntronRegion	1	5.03	3.89	4.15	0.82	17.47	0.19	9.71
39	ER8a	ExonRegion	0	71.86	39.26	81.81	20.93	148.77	20.41	35.46
40	E8a_E9a	KnownJunction	0	105.35	39.85	89.48	30.61	175.22	17.96	33.01
41	ER9a	ExonRegion	0	104.99	31.64	102.03	19.94	185.21	14.87	34.43
42	E9a_E10a	KnownJunction	0	91.69	15.87	109.10	9.62	145.21	13.24	33.21
43	E9a_E11a	NovelJunction	0	20.36	14.16	13.54	22.89	2.93	10.88	6.12
44	ER10a	ExonRegion	0	118.28	10.31	116.05	6.16	179.85	7.53	34.41
45	E10a_E11a	KnownJunction	0	116.96	8.62	113.04	4.17	137.12	5.12	31.66
46	ER11a	ExonRegion	0	100.86	17.65	120.54	15.66	199.85	7.70	29.55
47	E11a_E13a	KnownJunction	0	73.07	14.13	86.94	21.70	143.11	10.67	19.65
48	ER12a	ExonRegion	0	0.00	0.00	0.11	0.00	0.00	0.00	0.00
49	ER13a	ExonRegion	0	68.42	29.64	100.39	16.28	149.43	14.00	28.12
50	E13a_E14a	KnownJunction	0	48.80	42.30	83.16	13.49	133.78	17.47	22.50
51	E13a_E14b	KnownJunction	0	1.92	0.00	0.00	0.00	3.46	0.00	1.62
52	ER14a	ExonRegion	0	59.89	31.28	104.64	16.40	124.43	20.09	21.03
53	E14_Ab	KnownBoundary	0	70.35	16.87	110.62	22.73	163.97	23.07	22.60
54	ER14b	ExonRegion	0	80.34	31.08	118.31	19.64	186.90	19.28	31.64
55	E14a_E15a	KnownJunction	0	105.45	29.79	118.77	20.62	223.68	21.55	37.16
56	ER15a	ExonRegion	0	81.78	26.59	93.19	16.65	233.29	13.00	45.06
57	E15a_E16a	KnownJunction	0	43.38	15.76	39.58	7.88	220.48	4.82	35.31
58	E15a_E18a	NovelJunction	1	24.88	9.72	43.02	7.45	50.81	7.66	3.86
59	ER16a	ExonRegion	1	45.85	29.30	65.54	10.54	222.95	7.36	44.97
60	E16a_E17a	KnownJunction	1	6.44	8.01	9.90	0.00	68.86	0.00	10.86
61	E16a_E18a	KnownJunction	0	21.80	17.44	40.58	7.80	112.01	4.58	17.13
62	ER17a	ExonRegion	1	17.08	8.43	13.93	1.40	71.18	0.64	14.36
63	E17a_E18a	KnownJunction	0	23.38	5.70	14.47	1.68	60.72	1.05	8.60
64	ER18a	ExonRegion	0	73.60	39.16	106.85	28.37	217.18	24.25	46.90
65	E18a_E19a	KnownJunction	0	85.67	44.29	105.31	23.27	250.03	18.17	35.51
66	ER19a	ExonRegion	0	69.12	45.42	98.98	25.93	180.72	28.01	42.02
67	E19a_E20a	KnownJunction	0	64.74	33.65	103.77	26.31	168.79	33.87	36.59
68	I19	Intron	0	6.04	5.42	6.06	9.01	1.68	12.88	3.70
69	I19_AR1	ActiveIntronRegion	0	2.79	7.98	4.43	9.69	3.35	15.21	2.70
70	I19_SR2	SilentIntronRegion	0	6.75	6.55	6.91	7.26	1.15	12.68	4.93
71	I19_AR2	ActiveIntronRegion	1	10.88	4.53	8.66	15.69	1.82	17.78	4.98
72	E20_Aa	NovelBoundary	1	31.44	5.12	39.39	17.42	0.00	10.67	5.33
73	ER20a	ExonRegion	0	78.70	44.00	99.24	27.84	185.47	29.59	38.95
74	E20_Da	NovelBoundary	0	3.59	8.62	11.55	10.05	7.12	5.39	5.29
75	E20a_E21a	KnownJunction	0	72.18	37.70	98.44	23.16	175.75	29.13	34.24
76	I20_SR2	SilentIntronRegion	0	13.14	3.05	11.64	6.03	9.55	8.98	6.28
77	I20_AR2	ActiveIntronRegion	1	13.79	1.21	10.95	7.35	8.74	8.78	4.72
78	E21_Aa	NovelBoundary	1	12.50	4.18	12.14	0.00	20.03	10.37	8.30
79	ER21a	ExonRegion	0	123.81	34.97	144.29	30.38	262.30	26.81	44.85
80	E21a_E22a	KnownJunction	0	194.22	35.28	219.62	28.99	314.79	30.23	65.57
81	I21	Intron	0	10.45	5.61	11.32	5.17	7.97	9.03	4.37
82	I21_AR1	ActiveIntronRegion	0	14.49	8.16	9.97	10.15	6.25	10.16	1.73
83	I21_SR2	SilentIntronRegion	1	18.57	7.29	10.05	11.22	7.42	14.71	0.79
84	I21_AR2	ActiveIntronRegion	0	15.39	6.61	12.10	8.80	10.62	11.24	3.62
85	I21_AR3	ActiveIntronRegion	1	3.07	10.93	11.18	4.05	4.96	14.56	3.96
86	I21_SR3	SilentIntronRegion	0	8.92	6.84	12.70	3.45	7.48	11.01	6.15
87	ER22a	ExonRegion	0	178.11	53.92	216.60	37.57	363.09	39.83	65.69
88	E22_Da	NovelBoundary	0	1.94	6.54	7.42	4.33	3.11	8.84	2.09
89	E22a_E23a	KnownJunction	0	114.69	34.57	142.28	14.95	296.48	20.34	44.83
90	E22a_E24a	NovelJunction	1	29.74	11.40	23.22	12.43	2.93	12.11	4.82
91	ER23a	ExonRegion	0	101.44	35.09	130.25	17.35	270.75	21.42	41.01
92	E23a_E24a	KnownJunction	0	80.38	36.18	110.09	14.55	235.62	20.69	41.50
93	ER24a	ExonRegion	0	118.19	52.35	133.99	34.78	370.05	38.68	60.47
94	E24a_E25a	KnownJunction	0	118.38	55.28	112.29	21.92	380.00	38.11	57.25
95	E25_Aa	NovelBoundary	0	11.58	3.21	18.28	8.05	9.66	3.24	5.63
96	ER25a	ExonRegion	0	108.60	46.19	108.61	25.22	317.81	35.67	53.11
97	E25_Da	NovelBoundary	0	7.61	8.43	8.69	2.82	6.06	4.40	6.05
98	E25a_E26a	KnownJunction	0	89.16	33.21	89.76	24.44	295.51	34.41	45.83
99	E25a_E26b	KnownJunction	0	8.70	4.60	6.24	3.93	24.44	2.81	3.20
100	I25_AR1	ActiveIntronRegion	0	31.65	9.22	29.31	13.74	30.55	5.03	11.12
101	I25_AR2	ActiveIntronRegion	0	15.03	2.50	15.06	3.43	18.60	1.85	7.52
102	E26_Aa	NovelBoundary	0	16.62	5.54	14.92	1.65	19.64	3.32	14.47
103	ER26a	ExonRegion	0	129.12	43.46	108.25	28.39	398.64	34.92	58.81
104	E26_Ab	KnownBoundary	0	104.21	40.51	111.15	18.88	339.87	41.33	56.68
105	ER26b	ExonRegion	0	105.22	32.28	90.80	28.86	318.07	31.19	54.79
106	E26a_E27a	KnownJunction	0	99.87	28.37	93.02	21.81	428.88	27.28	48.08
107	ER27a	ExonRegion	0	107.42	29.31	99.33	21.30	244.25	24.09	34.89
108	E27_Da	KnownBoundary	0	47.87	39.77	56.30	29.85	158.79	19.75	20.51
109	ER27b	ExonRegion	0	48.49	23.41	64.38	21.98	124.57	19.25	23.71
110	IG7_AR3	ActiveIntergenicRegion	0	6.15	1.21	5.35	9.98	2.35	9.93	2.29