Order	SeqName	SeqType	IsAE	Lum_Epi	Lum_Epi2	Myo_Epi	Myo_Epi2	hESCs	StemLike	vHMECs
1	NEBL	Gene	0	130.65	28.66	11.78	3.35	40.82	3.28	39.04
2	377159	Transcript	0	102.06	74.09	10.43	7.54	31.68	7.58	43.32
3	377128	Transcript	1	89.69	23.13	4.22	1.23	5.68	0.90	4.36
4	377122	Transcript	0	1.70	1.39	0.00	0.00	0.00	0.00	0.89
5	377187	Transcript	0	0.38	0.15	0.00	0.00	0.00	0.00	0.08
6	377119	Transcript	0	0.92	0.10	0.08	0.00	0.18	0.00	0.11
7	ER1a	ExonRegion	0	44.46	32.15	4.78	4.99	6.53	1.19	8.41
8	E1a_E2a	KnownJunction	0	80.36	71.14	8.51	5.88	6.18	3.97	17.68
9	ER2a	ExonRegion	0	102.81	97.78	11.56	10.37	42.26	10.10	38.05
10	E2_Da	NovelBoundary	0	12.52	24.01	0.00	0.00	1.91	0.00	0.00
11	E2a_E3a	KnownJunction	0	120.10	92.92	10.69	9.83	31.12	7.80	39.05
12	I2_SR1	SilentIntronRegion	0	12.81	12.58	0.55	0.32	1.63	0.16	0.55
13	I2_AR1	ActiveIntronRegion	1	27.51	41.31	0.54	2.23	1.91	3.11	0.83
14	I2_SR2	SilentIntronRegion	0	19.95	22.57	0.84	1.53	1.95	1.59	0.81
15	I2_AR2	ActiveIntronRegion	0	24.82	18.34	0.47	1.25	0.49	1.23	0.00
16	I2_AR3	ActiveIntronRegion	1	33.39	17.87	0.00	1.56	0.71	1.23	0.11
17	I2_AR4	ActiveIntronRegion	1	35.71	26.39	0.56	2.22	2.64	1.51	1.34
18	I2_SR3	SilentIntronRegion	1	27.55	8.63	1.02	1.55	1.64	0.74	0.50
19	I2_AR2	ActiveIntronRegion	1	29.01	1.66	1.34	0.00	2.08	1.01	0.42
20	I2_SR3	SilentIntronRegion	1	28.25	5.21	0.82	0.00	1.67	0.53	0.51
21	ER3a	ExonRegion	0	133.50	91.10	13.31	9.56	26.07	10.49	46.70
22	E3a_E4a	KnownJunction	0	106.06	79.55	16.58	10.05	26.51	13.51	48.86
23	I3_SR1	SilentIntronRegion	1	126.80	34.32	4.75	0.69	2.14	5.13	1.20
24	I3_AR1	ActiveIntronRegion	0	9.55	11.80	1.35	0.00	1.50	1.05	0.67
25	I3_AR2	ActiveIntronRegion	0	9.41	10.93	1.35	0.00	0.81	2.45	0.67
26	I3_SR5	SilentIntronRegion	0	11.58	8.33	0.68	0.71	0.00	0.00	0.67
27	I3_AR13	ActiveIntronRegion	0	15.26	7.62	0.55	0.24	1.19	0.25	0.36
28	I3_SR7	SilentIntronRegion	0	15.65	10.27	0.93	0.88	1.37	0.20	0.54
29	I3_AR14	ActiveIntronRegion	0	14.12	11.45	0.33	0.39	1.22	0.40	0.11
30	ER4a	ExonRegion	0	117.82	84.91	12.18	8.08	36.88	7.76	58.72
31	E4_Da	NovelBoundary	0	25.99	20.52	2.01	1.06	4.10	0.00	3.45
32	E4a_E29a	KnownJunction	1	106.25	55.17	6.11	4.44	39.60	3.14	62.90
33	E5_Aa	NovelBoundary	1	52.84	18.86	4.63	3.63	4.68	4.34	2.97
34	ER5a	ExonRegion	1	44.24	9.79	0.86	0.94	2.53	0.30	2.21
35	E5a_E7a	KnownJunction	1	135.14	36.46	7.59	1.52	8.83	1.50	6.52
36	ER6a	ExonRegion	0	1.56	0.03	0.00	0.00	0.00	0.00	0.00
37	E6_Ab	KnownBoundary	0	0.00	1.00	0.00	0.00	0.00	0.00	0.00
38	ER6b	ExonRegion	0	0.05	0.96	0.00	0.00	0.46	0.00	0.02
39	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	ER7a	ExonRegion	1	116.92	22.61	6.26	2.06	8.54	3.66	6.71
41	E7a_E8a	KnownJunction	1	99.77	21.91	9.17	4.74	8.90	0.00	4.26
42	ER8a	ExonRegion	1	93.57	19.62	8.54	3.19	6.96	0.95	4.79
43	E8a_E9a	KnownJunction	1	61.67	17.47	3.82	4.82	3.32	0.00	3.68
44	ER9a	ExonRegion	1	49.99	25.07	5.64	1.34	3.46	1.46	3.70
45	E9a_E10a	KnownJunction	1	49.62	23.80	8.09	0.00	4.01	1.37	2.58
46	ER10a	ExonRegion	1	40.75	21.15	4.18	1.71	3.95	1.46	2.49
47	E10a_E11a	KnownJunction	0	29.19	19.91	4.27	0.00	1.78	2.73	3.96
48	ER11a	ExonRegion	0	30.77	16.21	4.69	0.00	2.35	1.20	4.34
49	E11_Da	KnownBoundary	0	34.85	12.77	4.38	0.00	4.33	0.00	3.98
50	ER11b	ExonRegion	1	29.70	14.20	2.77	0.00	5.42	0.56	1.92
51	E11b_E12a	KnownJunction	1	24.83	17.29	2.43	0.00	6.18	2.41	0.00
52	ER12a	ExonRegion	1	50.55	14.11	4.28	0.00	3.85	1.47	1.62
53	E12_Da	KnownBoundary	0	3.89	0.00	0.00	0.00	0.00	0.00	0.00
54	E12a_E13a	KnownJunction	1	59.48	8.46	2.44	0.00	3.83	0.00	2.18
55	ER12b	ExonRegion	0	0.92	0.10	0.08	0.00	0.18	0.00	0.11
56	ER13a	ExonRegion	1	91.83	12.95	4.71	0.83	6.24	1.09	1.85
57	E13a_E14a	KnownJunction	1	73.65	9.69	5.12	0.00	0.00	3.03	2.45
58	E13a_E15a	NovelJunction	0	17.71	4.12	0.00	0.00	8.39	0.00	0.00
59	ER14a	ExonRegion	1	128.40	10.23	5.69	0.63	1.94	2.99	2.47
60	E14a_E15a	KnownJunction	1	100.02	4.47	4.07	1.46	0.00	1.45	2.34
61	ER15a	ExonRegion	1	105.01	14.54	5.40	1.66	5.08	0.86	4.21
62	E15a_E16a	KnownJunction	1	94.93	21.04	6.91	4.23	4.68	1.50	3.91
63	ER16a	ExonRegion	1	97.61	18.00	4.87	2.31	9.82	1.15	4.09
64	E16a_E17a	KnownJunction	1	75.84	9.96	6.83	3.09	11.41	0.00	3.87
65	ER17a	ExonRegion	1	78.55	10.48	5.94	1.20	6.78	2.47	4.19
66	E17a_E18a	KnownJunction	1	67.81	13.71	4.18	1.68	3.32	3.32	0.79
67	ER18a	ExonRegion	1	86.58	19.13	4.50	2.06	5.11	2.10	1.85
68	E18a_E19a	KnownJunction	1	76.11	17.81	7.39	0.00	3.14	2.89	1.55
69	ER19a	ExonRegion	1	62.89	25.73	4.65	4.25	6.85	2.51	4.04
70	E19a_E20a	KnownJunction	1	55.04	24.70	3.26	4.33	4.45	1.66	2.42
71	ER20a	ExonRegion	1	51.05	24.01	7.01	5.43	7.75	1.44	4.45
72	E20a_E21a	KnownJunction	1	53.36	21.52	6.41	1.52	6.29	2.76	5.62
73	ER21a	ExonRegion	1	67.20	35.61	4.45	2.92	7.54	1.56	7.01
74	E21a_E22a	KnownJunction	1	74.17	28.92	3.81	1.35	9.66	0.00	7.91
75	ER22a	ExonRegion	1	84.43	32.07	3.97	1.27	8.53	1.91	7.77
76	E22a_E23a	KnownJunction	1	89.78	27.03	0.89	3.33	8.55	1.18	5.20
77	ER23a	ExonRegion	1	89.44	28.02	2.66	0.86	7.87	1.63	5.01
78	E23a_E24a	KnownJunction	1	98.24	22.33	3.00	1.22	6.20	1.26	6.59
79	ER24a	ExonRegion	1	88.59	21.27	2.94	0.60	7.61	4.60	4.65
80	E24_Da	NovelBoundary	1	38.92	2.99	0.88	0.00	0.00	1.13	2.54
81	E24a_E25a	KnownJunction	1	70.00	13.29	2.57	1.65	8.99	8.17	2.02
82	ER25a	ExonRegion	1	60.00	10.59	4.28	0.40	4.03	5.08	3.91
83	E25_Da	NovelBoundary	1	58.00	5.15	0.89	0.00	3.71	0.00	3.27
84	E25a_E26a	KnownJunction	1	30.41	7.59	1.74	0.00	0.88	7.08	2.36
85	E26_Aa	NovelBoundary	1	36.88	9.17	0.76	0.00	0.97	0.00	1.49
86	ER26a	ExonRegion	1	46.98	16.41	3.26	0.00	7.65	1.86	2.52
87	E26_Da	NovelBoundary	1	55.34	4.36	2.92	0.00	5.69	0.00	0.89
88	E26a_E27a	KnownJunction	0	20.08	11.74	1.32	0.00	5.86	1.45	0.89
89	I26_AR2	ActiveIntronRegion	1	33.73	7.49	1.81	0.18	2.17	0.89	1.47
90	ER27a	ExonRegion	0	21.61	15.28	2.72	0.40	6.51	1.66	3.53
91	E27a_E28a	KnownJunction	0	22.06	5.78	2.85	1.65	3.11	0.00	2.25
92	ER28a	ExonRegion	0	25.72	5.39	1.98	1.38	3.87	0.01	1.51
93	E28_Da	NovelBoundary	0	26.24	9.83	4.38	1.03	2.35	1.13	1.95
94	E28a_E29a	KnownJunction	0	13.90	1.26	1.37	0.00	0.00	0.00	0.00
95	ER29a	ExonRegion	0	124.93	67.63	12.19	5.72	46.80	7.85	66.95
96	E29a_E30a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
97	E29a_E30b	KnownJunction	0	1.70	1.39	0.00	0.00	0.00	0.00	0.89
98	E29a_E32a	KnownJunction	1	107.17	62.13	10.15	4.66	70.01	10.24	69.52
99	ER30a	ExonRegion	0	0.77	0.30	0.00	0.00	0.00	0.00	0.17
100	ER30b	ExonRegion	0	1.14	0.28	0.00	0.00	0.54	0.00	0.85
101	E30a_E31a	KnownJunction	0	0.00	0.00	0.00	0.00	1.98	0.00	0.00
102	ER31a	ExonRegion	0	4.15	0.62	0.68	0.00	1.60	0.00	0.69
103	E31a_E32a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00
104	ER32a	ExonRegion	1	151.38	82.71	19.21	5.14	74.86	7.61	95.66
105	E32a_E33a	KnownJunction	1	120.10	88.22	15.69	4.17	68.01	3.62	79.77
106	ER33a	ExonRegion	0	205.71	36.69	19.14	4.83	71.32	4.50	66.94
107	IG48_AR11	ActiveIntergenicRegion	0	45.17	11.41	4.13	0.96	23.16	1.34	18.19